Timeline



Aug 14, 2006:

4:22 PM Changeset [2519] by Johan Enell
will remove stdin/stdout if specified by config
2:30 PM Changeset [2518] by Nicklas Nordborg
Fixes #170: Categorize annotation types
2:30 PM Ticket #170 (Categorize annotation types) closed by Nicklas Nordborg
fixed: (In [2518]) Fixes #170: Categorize annotation types
12:07 PM Changeset [2517] by Nicklas Nordborg
References #170: Install now sets correct permissions for categories
11:52 AM Changeset [2516] by Nicklas Nordborg
References #170: Categorize annotation types Updated UML diagram
11:50 AM Changeset [2515] by Nicklas Nordborg
References #170: Categorize annotation types Most of the core and web …

Aug 12, 2006:

11:37 PM Ticket #150 (Affymetrix support) closed by Jari Häkkinen
fixed: * The resulting expression matrix is still not available as a file and …
11:33 PM DownloadPage edited by Jari Häkkinen
New packaged release (revision 2514). (diff)
12:18 AM Ticket #319 (Spot images shown in experiment explorer do not seem to correspond to ...) created by base
When viewing avg of spots in experiment explorer under reporter view, …

Aug 11, 2006:

2:15 PM Ticket #127 (Experiment explorer) closed by Nicklas Nordborg
fixed: (In [2514]) Fixes #127: Experiment explorer
2:15 PM Changeset [2514] by Nicklas Nordborg
Fixes #127: Experiment explorer
8:15 AM Changeset [2513] by Nicklas Nordborg
Do not show message about configurations for non-configurable plugins. …

Aug 10, 2006:

12:18 PM Ticket #318 (Plugin configuration values are not stored for a job) created by Nicklas Nordborg
Consider the following case: A user selects a plugin and …
12:07 PM Ticket #217 (Delete entire directory structure) closed by Nicklas Nordborg
duplicate: Is part of #305: delete recusively
11:54 AM Ticket #302 (Running a plugin without a configuration should not be possible ...) closed by Nicklas Nordborg
fixed: (In [2512]) Fixes #302: Running a plugin without a configuration …
11:54 AM Changeset [2512] by Nicklas Nordborg
Fixes #302: Running a plugin without a configuration should not be possible
9:36 AM Ticket #39 (Handling a string with only blank space in required fields) closed by Martin Svensson
fixed: (In [2511]) Fixes #39 Handling a string with only blank space in …
9:36 AM Changeset [2511] by Martin Svensson
Fixes #39 Handling a string with only blank space in required fields. …
8:16 AM Changeset [2510] by Nicklas Nordborg
Fixes #306: empty trashcan
8:16 AM Ticket #306 (empty trashcan) closed by Nicklas Nordborg
fixed: (In [2510]) Fixes #306: empty trashcan

Aug 9, 2006:

4:53 PM Changeset [2509] by Martin Svensson
References #39 Handling a string with only blank space in required …
2:59 PM Changeset [2508] by Martin Svensson
Fixes #315 Ctrl + clicking on the name of an images - opens two edit …
2:59 PM Ticket #315 (Ctrl + clicking on the name of an images - opens two edit windows for ...) closed by Martin Svensson
fixed: (In [2508]) Fixes #315 Ctrl + clicking on the name of an images - …
2:46 PM Ticket #317 (Display and enter dates in different formats) created by Nicklas Nordborg
Add support in the web client for displaying and entering dates in …
2:45 PM Ticket #316 (Add support for color coding in data tables) created by Nicklas Nordborg
Base1 has a nice feature where ratios are displayed with a colored …
2:35 PM Ticket #266 (Strange mouse-over message in some places) closed by Martin Svensson
fixed: (In [2507]) Fixes #266 Strange mouse-over message in some places. view …
2:35 PM Changeset [2507] by Martin Svensson
Fixes #266 Strange mouse-over message in some places. view pages updated.
2:33 PM Changeset [2506] by Nicklas Nordborg
References #170: Categorize annotation types Updated UML diagram
2:10 PM Changeset [2505] by Johan Enell
plugin parameters removed only job parameters
1:37 PM Ticket #315 (Ctrl + clicking on the name of an images - opens two edit windows for ...) created by Martin Svensson
1:33 PM Changeset [2504] by Nicklas Nordborg
Fixed problem with execution time estimation.
1:20 PM Changeset [2503] by Martin Svensson
References #266 Strange mouse-over message in some places. file-, …
1:03 PM Changeset [2502] by Nicklas Nordborg
References #127: Experiment explorer Cleaned up and documented most …
11:17 AM Changeset [2501] by Martin Svensson
References #266 Strange mouse-over message in some places. …
10:36 AM Changeset [2500] by Martin Svensson
References # 266 Strange mouse-over message in some places. …

Aug 8, 2006:

4:09 PM Changeset [2499] by Nicklas Nordborg
Fixed problem with the new update method.
4:01 PM Ticket #314 (Update documentation that shows code examples with ...) closed by Nicklas Nordborg
fixed: (In [2498]) Fixes #314: Update documentation that shows code examples …
4:01 PM Changeset [2498] by Nicklas Nordborg
Fixes #314: Update documentation that shows code examples with …
3:43 PM Changeset [2497] by Nicklas Nordborg
Better performance when creating a root bioassayset by fetching the …
2:55 PM Changeset [2496] by Nicklas Nordborg
Deleted obsolete files related to the removed AffyFeatureData? class.
2:52 PM Ticket #173 (Attach Hardware/Software to more items) closed by Martin Svensson
fixed: (In [2495]) Fixes #173 Fully functional to create/delete HardwareType?
2:52 PM Changeset [2495] by Martin Svensson
Fixes #173 Fully functional to create/delete HardwareType? and attach …
1:35 PM Ticket #314 (Update documentation that shows code examples with ...) created by Nicklas Nordborg
The Transformation.newProduct() method changed because of ticket #196. …
1:20 PM Changeset [2494] by Nicklas Nordborg
* Fixed problem with FlatFileParser? skipping every other section. * …
1:13 PM Changeset [2493] by dominic
gui changes and removal of default categories in install.java
12:57 PM Ticket #196 (Transformation.newProduct should create child BioAssays if possible) closed by Nicklas Nordborg
fixed: (In [2492]) Fixes #196: Transformation.newProduct should create child …
12:57 PM Changeset [2492] by Nicklas Nordborg
Fixes #196: Transformation.newProduct should create child BioAssays? if …
11:36 AM DownloadPage edited by Jari Häkkinen
Updated demo server to revision 2491 (diff)
9:51 AM Changeset [2491] by Nicklas Nordborg
Fixes #168: Use formulas in table listings of bioassay data
9:51 AM Ticket #168 (Use formulas in table listings of bioassay data) closed by Nicklas Nordborg
fixed: (In [2491]) Fixes #168: Use formulas in table listings of bioassay data
9:29 AM Changeset [2490] by Nicklas Nordborg
References #127: Experiment explorer * Added annotations, support …

Aug 7, 2006:

3:49 PM Changeset [2489] by Jari Häkkinen
Added PostgreSQL setup information.
12:13 PM Changeset [2488] by Nicklas Nordborg
Fixed sorting problem with always visible columns

Aug 4, 2006:

2:33 PM Changeset [2487] by Nicklas Nordborg
References #127: Experiment explorer First version. A lot of the code …
2:15 PM Ticket #313 (Error handling in import plugins) created by Johan Enell
The reporter importer (and pobably others) fails when there is to long …
1:54 PM Ticket #312 (ReporterType import) created by Johan Enell
ReporterFlatFileImporter? assumes that every reporter in the file has …

Aug 3, 2006:

5:20 PM Changeset [2486] by Martin Svensson
References #173. Possible to attach a hardware to a PlateEvent? in the GUI
1:03 PM Changeset [2485] by Johan Enell
Position batcher added
10:48 AM Ticket #311 (Allow parsing of numbers with different locale settings) created by Nicklas Nordborg
The problem can arise in the FlatFileParser? and it's different Mapper …
8:41 AM Changeset [2484] by Martin Svensson
Refrences #173 A hardware can now be attach to a Hybridization in the GUI.
8:35 AM Ticket #309 (count spots in bioassayset) closed by Nicklas Nordborg
fixed: (In [2483]) Fixes #309: count spots in bioassayset
8:35 AM Changeset [2483] by Nicklas Nordborg
Fixes #309: count spots in bioassayset
7:59 AM Changeset [2482] by Nicklas Nordborg
Fixes #310: Permission denied on raw bioassay
7:59 AM Ticket #310 (Permission denied on raw bioassay) closed by Nicklas Nordborg
fixed: (In [2482]) Fixes #310: Permission denied on raw bioassay

Aug 2, 2006:

2:39 PM Ticket #310 (Permission denied on raw bioassay) created by Johan Enell
I get a permission denied when clicking on a raw bioassay. The owned …
1:59 PM Changeset [2481] by Johan Enell
Base1PluginExecuter can now export data to base1 plug-in and import from it
12:57 PM Ticket #309 (count spots in bioassayset) created by Johan Enell
If a BioAssaySet? only has spot data the spot count is wrong.
11:21 AM Changeset [2480] by Martin Svensson
Updated db schema_version and correct comments in BioMaterialEvent? and …
9:40 AM Changeset [2479] by Martin Svensson
References #173 Made it possible to attach a Hardware item to …
9:11 AM Changeset [2478] by Martin Svensson
Fixed a corrupt link
8:15 AM Ticket #307 (display of annotation type to users from administrate page) closed by Nicklas Nordborg
invalid: In the view/presets dropdown one has to select the 'Shared to me' …

Aug 1, 2006:

7:19 PM Ticket #308 (Firefox unresponsive script warning when uploading files) created by msettles@…
When uploading affymetrix .CEL files, upload process occurs in …
4:13 PM Ticket #307 (display of annotation type to users from administrate page) created by rocca@…
I have noted the following: When creating a new user and setting the …
2:16 PM Changeset [2477] by Martin Svensson
Created an association between BiomaterialEventData?-HardwareData? and …
1:43 PM Ticket #306 (empty trashcan) created by Johan Enell
When you want to empty the trashcan you have to mark every item (max …
1:39 PM Ticket #305 (delete recusively) created by Johan Enell
When items are presented in a tree view (the analyse tree and the file …
8:13 AM Changeset [2476] by Martin Svensson
Fixes #304 An empty list page is viewed when changing the …
8:13 AM Ticket #304 (An empty list page is viewed when changing the view-preferences for ...) closed by Martin Svensson
fixed: (In [2476]) Fixes #304 An empty list page is viewed when changing the …

Jul 31, 2006:

5:59 PM Changeset [2475] by dominic
Fixed issues from feedbacks: code comments and patterns, standards …
3:53 PM Ticket #263 (Update to latest versions of 3rd-party software) closed by Nicklas Nordborg
fixed: (In [2474]) Fixes #263: Update to latest versions of 3rd-party …
3:52 PM Changeset [2474] by Nicklas Nordborg
Fixes #263: Update to latest versions of 3rd-party software * Log4j: …
11:56 AM Ticket #304 (An empty list page is viewed when changing the view-preferences for ...) created by Martin Svensson
Precondition: Viewing items that's "Owned by me" and "Shared to me" …
9:11 AM Ticket #303 (News items are not shown in View -> home page) closed by Nicklas Nordborg
fixed: (In [2473]) Fixes #303: News items are not shown in View -> home page …
9:11 AM Changeset [2473] by Nicklas Nordborg
Fixes #303: News items are not shown in View -> home page Needed a …
8:43 AM Changeset [2472] by Martin Svensson
Added pool button for samples, extracts and labeledextracts.

Jul 26, 2006:

11:59 PM Changeset [2471] by Jari Häkkinen
Creating tab2mage export branch for Dominic.

Jul 22, 2006:

2:26 PM Changeset [2470] by Jari Häkkinen
Fixed spelling for 'successfully'.
11:17 AM Ticket #303 (News items are not shown in View -> home page) created by Jari Häkkinen
7:48 AM Ticket #302 (Running a plugin without a configuration should not be possible ...) created by Jari Häkkinen
and is not. However the behaviour of BASE should be changed in this …
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