Timeline
Jun 15, 2006:
- 4:58 PM Changeset [2386] by
- Viewing permissions on an item in single item view, part of #207
- 2:09 PM Ticket #285 (Analysis plugins working on the same experiment may fail with a ...) updated by
-
Status changed
- 1:43 PM Changeset [2385] by
- File manager now use the new view/download functionality
- 1:23 PM Ticket #150 (Affymetrix support) updated by
- (In [2384]) References #150: Affymetrix support It is now possible to …
- 1:23 PM Changeset [2384] by
- References #150: Affymetrix support It is now possible to link CDF …
- 1:22 PM Ticket #150 (Affymetrix support) updated by
-
Summary changed
Jun 14, 2006:
- 9:14 PM Changeset [2383] by
- Added some clarifying words about upgrades.
- 9:08 PM DownloadPage edited by
- base.thep.lu.se initiated changes. (diff)
- 9:06 PM DeveloperInformation edited by
- base.thep.lu.se initiated changes. (diff)
- 8:59 PM WikiStart edited by
- Fixed links to point at proper servers (base.thep.lu.se change) (diff)
- 2:48 PM Tickets #267,107 batch updated by
- fixed: (In [2382]) Fixes #107 and #267: Any-to-any relation and Linking of …
- 2:48 PM Changeset [2382] by
- Fixes #107 and #267: Any-to-any relation and Linking of files to items
- 2:06 PM Ticket #285 (Analysis plugins working on the same experiment may fail with a ...) updated by
-
Summary changed
- 2:04 PM Changeset [2381] by
- Ooops, missed this one while checking in
- 2:02 PM Ticket #248 (Postgres hangs when trying to load data from a filtered bioassayset) closed by
- fixed: (In [2380]) Fixes #248: Postgres hangs when trying to load data from a …
- 2:02 PM Changeset [2380] by
- Fixes #248: Postgres hangs when trying to load data from a filtered …
- 1:43 PM Ticket #285 (Analysis plugins working on the same experiment may fail with a ...) created by
- The problem seems to be that when generating the ID numbers for data …
- 8:56 AM Changeset [2379] by
- Better handling of SQLException which uses a non-standard chaining …
Jun 13, 2006:
- 3:57 PM Changeset [2378] by
- Added method: isRolledBack
- 2:54 PM Ticket #144 (Overhaul of BASE web site) closed by
- fixed: The trac is now the official base.thep.lu.se
- 2:53 PM WikiStart edited by
- This is now the base.thep.lu.se page. Changed old base server to … (diff)
- 11:39 AM Changeset [2377] by
- Fixes #274 cannot navigate between tabs in experiment
- 11:39 AM Ticket #274 (cannot navigate between tabs in experiment) closed by
- fixed: (In [2377]) Fixes #274 cannot navigate between tabs in experiment
- 10:45 AM Ticket #274 (cannot navigate between tabs in experiment) updated by
-
Status changed
- 9:57 AM Ticket #207 (Display the logged in user's permissions on items) updated by
-
Status changed
- 9:52 AM Changeset [2376] by
- Correct a misspelt word in alert message
- 9:23 AM Changeset [2375] by
- Fixes the case when the the root exception (WebException) was wrapped …
- 8:57 AM Ticket #195 (Link the "Item is shared" icon in the list view to the Share item popup) closed by
- fixed: (In [2374]) Fixes #195 Link the "Item is shared" icon in the list view …
- 8:57 AM Changeset [2374] by
- Fixes #195 Link the "Item is shared" icon in the list view to the …
- 8:00 AM Ticket #283 (cannot save changes to plugin configurations) closed by
- fixed: (In [2373]) Fixes #283: cannot save changes to plugin configurations
- 7:59 AM Changeset [2373] by
- Fixes #283: cannot save changes to plugin configurations
- 7:58 AM Ticket #283 (cannot save changes to plugin configurations) updated by
-
Milestone, Status, Owner changed
Jun 12, 2006:
- 10:14 PM Ticket #284 (uploading file with same name as existing file gives error) created by
- If you attempt to upload a file with the same name as a file that is …
- 10:10 PM Ticket #283 (cannot save changes to plugin configurations) created by
- When attempting to edit a plugin configuration, the "save" button does …
- 11:38 AM Changeset [2372] by
- References #277. Administrate->Plugins->Definitions page …
- 11:38 AM Ticket #277 (Administrate->Plugins->Definitions page malfunctioning) updated by
- (In [2372]) References #277. Administrate->Plugins->Definitions page …
- 11:38 AM DownloadPage edited by
- New packaged release (revision 2371) (diff)
- 10:42 AM Changeset [2371] by
- Commit changes to Install class and common queries xml file for …
- 10:37 AM Changeset [2370] by
- Fixes #277: Administrate->Plugins->Definitions page malfunctioning
- 10:37 AM Ticket #277 (Administrate->Plugins->Definitions page malfunctioning) closed by
- fixed: (In [2370]) Fixes #277: Administrate->Plugins->Definitions page …
- 8:59 AM Ticket #195 (Link the "Item is shared" icon in the list view to the Share item popup) updated by
-
Status changed
- 8:29 AM Ticket #280 (Shared item doesn't appear in the list, though the item is shared to ...) closed by
- invalid: Short answer: Use the menu: File -> Reload permissions Long answer: …
- 8:20 AM Changeset [2369] by
- Changed compiler error generating line.
- 8:18 AM Ticket #279 (Permissions, Read and Write,selected when opening the Share-popup ...) closed by
- invalid: Actaully it is the Read and Use permissions that are checked. This is …
- 8:15 AM Ticket #278 (Trying to create a new plate.) updated by
-
Priority, Milestone changed
The original exception is a java.lang.OutOfMemoryError. This would … - 8:08 AM Ticket #277 (Administrate->Plugins->Definitions page malfunctioning) updated by
-
Priority changed
- 8:08 AM Ticket #277 (Administrate->Plugins->Definitions page malfunctioning) updated by
-
Milestone changed
- 8:08 AM Ticket #277 (Administrate->Plugins->Definitions page malfunctioning) updated by
-
Owner changed
This could be an unhandled exception that is not shown because part … - 8:01 AM Ticket #276 (Typo in alert box when attempting to "share") updated by
-
Milestone changed
- 8:01 AM Ticket #276 (Typo in alert box when attempting to "share") closed by
- fixed: (In [2368]) Fixes #276: Typo in alert box when attempting to "share"
- 8:01 AM Changeset [2368] by
- Fixes #276: Typo in alert box when attempting to "share"
Jun 9, 2006:
- 11:36 PM Ticket #282 (http://1stbest.bitacoras.com/buy-ambien.html) created by
- greats from me.... [URL= http://1stbest.bitacoras.com/buy-ambien.html …
- 11:32 PM Ticket #281 (http://1stbest.bitacoras.com/buy-diazepam.html) created by
- Hi, everybody :) [URL= http://1stbest.bitacoras.com/buy-diazepam.html …
- 5:16 PM Changeset [2367] by
- reading output from plugin is halfdone
- 5:16 PM Changeset [2366] by
- added static method getFile(DbControl, Directory, filename)
- 3:24 PM Changeset [2365] by
- resolved return value for isincontext method
- 11:35 AM Changeset [2364] by
- nomsg
- 11:35 AM Changeset [2363] by
- nomsg
- 11:33 AM Ticket #280 (Shared item doesn't appear in the list, though the item is shared to ...) updated by
-
Owner changed
- 11:11 AM Changeset [2362] by
- Removed System.out.print used for debugging
- 11:06 AM Ticket #280 (Shared item doesn't appear in the list, though the item is shared to ...) created by
- Logged in as Root(Administrator) eg. An item is shared to 'Everyone' …
- 10:47 AM Changeset [2361] by
- nomsg
- 10:31 AM Changeset [2360] by
- nomsg
- 10:30 AM Changeset [2359] by
- nomsg
Jun 8, 2006:
- 5:22 PM Changeset [2358] by
- Commitiing new changes to current revision 2357. …
- 4:09 PM Changeset [2357] by
- Commitiing new changes current revision 2356. After a new check out
- 3:58 PM Ticket #279 (Permissions, Read and Write,selected when opening the Share-popup ...) created by
- When opening the Share-popup, to set access permissions for other …
- 12:09 PM Changeset [2356] by
- the jsp folder for the anotationtype categories
- 9:02 AM Ticket #190 (Beyond last page when filter is changed) closed by
- fixed: (In [2355]) Fixes #190 Beyond last page when filter is changed
- 9:02 AM Changeset [2355] by
- Fixes #190 Beyond last page when filter is changed
Jun 7, 2006:
- 11:13 AM Ticket #190 (Beyond last page when filter is changed) updated by
-
Status changed
- 10:53 AM Ticket #157 (Display and link to associated items from list page) closed by
- fixed: (In [2354]) Fixes #157 Display and link to associated items from list page
- 10:53 AM Changeset [2354] by
- Fixes #157 Display and link to associated items from list page
- 2:18 AM Ticket #150 (Affymetrix support) updated by
- Just want to drop a note. We've been implementing affxparser in R …
Jun 6, 2006:
- 10:33 PM Ticket #278 (Trying to create a new plate.) updated by
- Further information from this error: Base version 2.0 (build …
- 9:50 PM Ticket #278 (Trying to create a new plate.) created by
- I'd previously created a dummy plate geometry and plate type, and upon …
- 5:54 PM Ticket #277 (Administrate->Plugins->Definitions page malfunctioning) created by
- When going to the Plugins Definitions page, only 7 results are …
- 5:41 PM Ticket #276 (Typo in alert box when attempting to "share") created by
- When viewing a list (samples, extracts, etc) I click on "Share" …
Jun 2, 2006:
- 12:20 PM Changeset [2353] by
- nomsg
- 8:02 AM Ticket #275 (Property-tab doesn't work when viewing an experiment) closed by
- duplicate
- 8:02 AM Ticket #275 (Property-tab doesn't work when viewing an experiment) reopened by
- 8:02 AM Ticket #275 (Property-tab doesn't work when viewing an experiment) closed by
- worksforme
- 8:01 AM Ticket #275 (Property-tab doesn't work when viewing an experiment) created by
- When I view an experiment, then go to bioassay sets by clicking the …
Jun 1, 2006:
- 4:07 PM Ticket #107 (Any-to-any relation) updated by
- (In [2352]) First version of specification for Any-to-any. References #107.
- 4:07 PM Changeset [2352] by
- First version of specification for Any-to-any. References #107.
- 3:52 PM Ticket #107 (Any-to-any relation) updated by
-
Status, Owner changed
- 3:52 PM Ticket #267 (Linking of files to items) updated by
-
Status changed
- 2:09 PM DeveloperInformation edited by
- Changed plugin example package link to point to autogenerated location. (diff)
- 1:59 PM Changeset [2351] by
- Reverting link change.
- 11:20 AM Ticket #267 (Linking of files to items) updated by
-
Description changed
- 11:13 AM Changeset [2350] by
- Install filter formulas for all channels: All intensities > 0
- 11:05 AM Changeset [2349] by
- Updated link to example plug-ins.
- 11:01 AM Ticket #177 (Store title and description of plugin parameters, not just the name) closed by
- fixed: (In [2348]) Fixes #177: Store title and description of plugin …
- 11:01 AM Changeset [2348] by
- Fixes #177: Store title and description of plugin parameters, not just …
- 10:12 AM DeveloperInformation edited by
- Updated link to plug-in examples. (diff)
- 9:28 AM Changeset [2347] by
- Skips spots with coordinates falling outside the image instead of …
- 8:35 AM Changeset [2346] by
- Fixed compilation bug due to core interface changes.
- 8:08 AM Ticket #274 (cannot navigate between tabs in experiment) updated by
-
Milestone, Owner changed
With Mozilla I get the following javascript error message: Error: …
May 31, 2006:
- 8:27 PM Ticket #262 (Overview of an experiment) updated by
- Also allow user to select what items to include in the report and …
- 6:39 PM Changeset [2345] by
- Merging trunk changes r2125:2342 into branch dominic_annotations
- 6:00 PM Ticket #274 (cannot navigate between tabs in experiment) created by
- When selecting an experiment, there are 2 tabs available: "Properties" …
- 1:41 PM Changeset [2344] by
- Updated UML doc for changes in ticket #206.
- 1:17 PM Ticket #206 (Display and filter on permisssion in lists) closed by
- fixed: (In [2343]) Fixes #206: Display and filter on permisssion in lists …
- 1:17 PM Changeset [2343] by
- Fixes #206: Display and filter on permisssion in lists NOTE! This …
- 1:14 PM Ticket #206 (Display and filter on permisssion in lists) updated by
- The infrastructure for this ticket is now in place. The most important …
- 8:00 AM Ticket #206 (Display and filter on permisssion in lists) updated by
-
Status changed
- 12:57 AM Ticket #150 (Affymetrix support) updated by
- Information regarding Affymetrix in BASE 2 is available here: …
- 12:47 AM Changeset [2342] by
- Compilation of Affymetrix discussions.
May 30, 2006:
- 8:07 PM Changeset [2341] by
- Fixed classpath for installation program
- 2:31 PM Ticket #177 (Store title and description of plugin parameters, not just the name) updated by
-
Status changed
- 2:22 PM Ticket #175 (Move core plugins to a standalone compilation unit) closed by
- fixed: (In [2340]) Fixes #175: Move core plugins to a standalone compilation unit
- 2:22 PM Changeset [2340] by
- Fixes #175: Move core plugins to a standalone compilation unit
- 2:05 PM Ticket #157 (Display and link to associated items from list page) updated by
-
Status changed
- 1:13 PM Ticket #175 (Move core plugins to a standalone compilation unit) updated by
-
Status changed
- 12:42 PM Changeset [2339] by
- nomsg
- 12:35 PM Ticket #203 (Infinite maxlength on StringParameterType) updated by
-
Owner changed
- 12:34 PM Ticket #173 (Attach Hardware/Software to more items) updated by
-
Owner changed
- 12:32 PM Changeset [2338] by
- This class was modified to include testing annotation type categories …
- 12:27 PM Ticket #190 (Beyond last page when filter is changed) updated by
-
Owner changed
- 12:27 PM Ticket #157 (Display and link to associated items from list page) updated by
-
Owner changed
- 12:27 PM Changeset [2337] by
- This class is the core class for annotation type categories
- 12:26 PM Ticket #207 (Display the logged in user's permissions on items) updated by
-
Owner changed
- 12:26 PM Ticket #195 (Link the "Item is shared" icon in the list view to the Share item popup) updated by
-
Owner changed
- 12:25 PM Ticket #269 (Make hybridizations/experiments web gui more user friendly) updated by
-
Owner changed
- 12:25 PM Ticket #268 (Make biomaterials web gui more user-friendly) updated by
-
Owner changed
- 12:23 PM Ticket #190 (Beyond last page when filter is changed) updated by
-
Owner changed
- 12:19 PM Ticket #23 (Apply button in popup windows?) updated by
- This ticket is now part of tickets #268, #269, #270, #271 and #272.
- 12:18 PM Ticket #190 (Beyond last page when filter is changed) updated by
-
Milestone, Summary, Priority changed
This ticket is now part of tickets #268, #269, #270, #271 and #272. - 12:17 PM Ticket #207 (Display the logged in user's permissions on items) updated by
- This ticket is now part of tickets #268, #269, #270, #271 and #272.
- 12:17 PM Ticket #195 (Link the "Item is shared" icon in the list view to the Share item popup) updated by
- This ticket is now part of tickets #268, #269, #270, #271 and #272.
- 12:16 PM Ticket #20 (Display and link to associated item from view page) updated by
-
Summary changed
- 12:16 PM Ticket #157 (Display and link to associated items from list page) updated by
-
Priority, Summary changed
This ticket is now part of tickets #268, #269, #270, #271 and #272. - 12:13 PM Ticket #20 (Display and link to associated item from view page) updated by
-
Priority changed
This ticket is now part of tickets #268, #269, #270, #271 and #272. - 12:12 PM Ticket #206 (Display and filter on permisssion in lists) updated by
-
Description, Summary, Priority, Type changed
This ticket is now part of tickets #268, #269, #270, #271 and #272. - 12:10 PM Ticket #273 (Make rest of web gui user-friendly) closed by
- duplicate
- 12:09 PM Ticket #273 (Make rest of web gui user-friendly) created by
- This ticket covers item not covered by tickets #268, #269, #270 and …
- 12:08 PM Ticket #146 (Add help text to the web gui) updated by
-
Type, Priority, Description, Summary changed
- 12:06 PM Ticket #272 (Make rest of web gui user-friendly) created by
- This ticket covers item not covered by tickets #268, #269, #270 and …
- 12:04 PM Ticket #271 (Make admin web gui more user-friendly) created by
- This includes reviewing what information and functionality is …
- 12:04 PM Ticket #270 (Make array lims web gui more user friendly) created by
- This includes reviewing what information and functionality is …
- 12:03 PM Ticket #269 (Make hybridizations/experiments web gui more user friendly) created by
- This includes reviewing what information and functionality is …
- 12:01 PM Ticket #268 (Make biomaterials web gui more user-friendly) created by
- This includes reviewing what information and functionality is …
- 11:51 AM Ticket #107 (Any-to-any relation) updated by
- See also #267
- 11:49 AM Ticket #267 (Linking of files to items) created by
- Some features require that files can be linked to other items. For …
- 11:44 AM Ticket #191 (Mobile number field in user info?) updated by
-
Priority changed
- 11:43 AM Ticket #173 (Attach Hardware/Software to more items) updated by
-
Priority, Milestone changed
- 11:43 AM Ticket #177 (Store title and description of plugin parameters, not just the name) updated by
-
Priority changed
- 11:42 AM Ticket #172 (Add externalId property to annotation type) updated by
-
Priority changed
- 11:41 AM Ticket #257 (Fix the Jep.nodeToExpression method) updated by
-
Priority changed
- 11:40 AM Ticket #252 (Make the trashcan smarter when deleting items) updated by
-
Priority changed
- 11:40 AM Ticket #217 (Delete entire directory structure) updated by
-
Priority changed
- 11:40 AM Ticket #196 (Transformation.newProduct should create child BioAssays if possible) updated by
-
Priority changed
- 11:39 AM Ticket #263 (Update to latest versions of 3rd-party software) updated by
-
Priority changed
Should not be done too early and not too late (in case there are … - 11:37 AM Ticket #203 (Infinite maxlength on StringParameterType) updated by
-
Priority changed
- 11:36 AM Ticket #241 (Files that have been used for parameters to a job can't be deleted properly) updated by
-
Priority changed
- 11:29 AM Ticket #202 (TestPrintMapFlatFileImporter throws exception: Import failed on line ...) updated by
-
Priority changed
- 11:29 AM Ticket #248 (Postgres hangs when trying to load data from a filtered bioassayset) updated by
-
Priority changed
- 11:28 AM Ticket #212 (Array slide import plugin) updated by
-
Priority changed
- 11:28 AM Ticket #10 (Analysis: Hierarchical clustering) updated by
-
Priority changed
- 11:28 AM Ticket #189 (Allow export plugins to send download immediately to client) updated by
-
Priority changed
- 11:27 AM Ticket #175 (Move core plugins to a standalone compilation unit) updated by
-
Priority changed
- 11:27 AM Ticket #150 (Affymetrix support) updated by
-
Priority changed
- 11:27 AM Ticket #264 (Base1 plug-in executer enhancements) updated by
-
Priority changed
- 11:25 AM Ticket #168 (Use formulas in table listings of bioassay data) updated by
-
Priority changed
- 11:25 AM Ticket #169 (Use formulas for creating extra values) updated by
-
Priority changed
- 11:25 AM Ticket #127 (Experiment explorer) updated by
-
Priority changed
- 11:24 AM Ticket #199 (Use reporter lists in filter for bioassay sets) updated by
-
Priority changed
- 11:10 AM Changeset [2336] by
- This class is the core class for annotation type categories
- 9:26 AM Ticket #248 (Postgres hangs when trying to load data from a filtered bioassayset) updated by
- I have done some more tests and found another problem, but maybe also …
- 9:02 AM Ticket #266 (Strange mouse-over message in some places) created by
- An example is when changing roles for an account the mouse-over …
- 8:55 AM Ticket #265 (Information display when viewing details on roles needs a change) created by
- Choosing Administrate->Roles->Power User will display all accounts …
May 29, 2006:
- 3:21 PM Milestone BASE 2.0 RC2 completed
- This milestone includes * Affymetrix support (delayed, will appear …
- 3:17 PM DownloadPage edited by
- RC2 released, new download link. (diff)
- 3:13 PM Changeset [2335] by
- News: RC2 released.
- 2:21 PM Changeset [2334] by
- Releasing RC2
- 2:18 PM Changeset [2333] by
- Preparing for RC2
- 2:14 PM Changeset [2332] by
- Correct a misspelt menu
- 1:42 PM Ticket #149 (Plugin bridge that allows BASE1 plug-ins to be run in BASE2) closed by
- duplicate
- 12:43 PM Ticket #248 (Postgres hangs when trying to load data from a filtered bioassayset) updated by
- NO!! The hanging is back, but postgres isn't really hung. It is the …
- 11:25 AM Ticket #264 (Base1 plug-in executer enhancements) created by
- * Export annotations For each BioAssay the annotation from the …
- 11:12 AM Ticket #204 (Base1 plug-in runner) closed by
- fixed
- 9:27 AM Changeset [2331] by
- 9:27 AM Changeset [2330] by
- pluginexecuter create a serial basefile no annotations
- 9:13 AM Ticket #144 (Overhaul of BASE web site) updated by
-
Status, Owner changed
Overhaul performed. Need links and information about BASE 1.2.x before … - 8:58 AM Changeset [2329] by
- Bumped to RC2. Changed contributor list.
- 8:55 AM Changeset [2328] by
- Bumped RC1 to RC2. Fixed minor issues.
- 8:29 AM Ticket #261 (hardware and software sharing problem) closed by
- fixed: The problem couldn't be recreated in build #2327
- 8:27 AM WikiStart edited by
- (diff)
May 24, 2006:
- 2:55 PM Changeset [2327] by
- Added documentation for the plot servlet and plot utilities
- 12:20 PM Changeset [2326] by
- Help text for plugin sections is now displayed in the web client.
- 11:51 AM Changeset [2325] by
- Added and cleaned up some JavaDoc
- 11:51 AM Ticket #84 (getRequestInformation returns TODO in description fields for many plugins) closed by
- fixed: (In [2324]) Fixes #84: getRequestInformation returns TODO in …
- 11:50 AM Changeset [2324] by
- Fixes #84: getRequestInformation returns TODO in description fields …
- 11:49 AM Ticket #84 (getRequestInformation returns TODO in description fields for many plugins) updated by
-
Priority, Status, Type, Owner, Milestone changed
- 11:43 AM DeveloperInformation edited by
- (diff)
- 11:39 AM WikiStart edited by
- Added todo link. Clarified text on plug-ins. (diff)
- 11:11 AM WikiStart edited by
- Moved mailing list to another page. (diff)
- 11:10 AM MailingLists created by
- 11:07 AM Changeset [2323] by
- Added news item about the new BASE web site. Removed obsolete …
- 10:53 AM WikiStart edited by
- Added demo server information. (diff)
- 10:26 AM WikiStart edited by
- Spelling error fixed (diff)
- 10:26 AM Changeset [2322] by
- Fixed some Javadoc items
- 10:25 AM Changeset [2321] by
- Log SQL statements
- 9:41 AM Changeset [2320] by
- Now finds the parent <tbl:table> tag.
- 9:39 AM Changeset [2319] by
- Validate that no expressions are null
- 9:22 AM Changeset [2318] by
- Set row and column coordinate of a feature
- 9:03 AM Ticket #209 (Add JepMapper to FlatFileParser) closed by
- fixed: (In [2317]) Fixes #209: Add JepMapper to FlatFileParser
- 9:03 AM Changeset [2317] by
- Fixes #209: Add JepMapper to FlatFileParser
- 2:35 AM Changeset [2316] by
- Moved download information to the Trac wiki.
- 2:29 AM DownloadPage edited by
- (diff)
- 2:20 AM DownloadPage edited by
- First finalized version. (diff)
- 2:04 AM DownloadPage edited by
- (diff)
- 1:28 AM DownloadPage edited by
- (diff)
- 12:53 AM DownloadPage created by
- 12:49 AM WikiStart edited by
- (diff)
May 23, 2006:
- 3:29 PM Ticket #209 (Add JepMapper to FlatFileParser) updated by
-
Status, Milestone changed
- 3:01 PM Ticket #263 (Update to latest versions of 3rd-party software) created by
- Well, maybe we don't need to update everything, but we definitely have …
- 2:50 PM Changeset [2315] by
- Now contains correct jar file information and version numbers
- 2:31 PM WikiStart edited by
- (diff)
- 1:42 PM Ticket #262 (Overview of an experiment) created by
- Create a plugin or something that generates an overview of all items …
- 1:22 PM Ticket #203 (Infinite maxlength on StringParameterType) updated by
-
Milestone changed
- 1:21 PM Ticket #209 (Add JepMapper to FlatFileParser) updated by
-
Milestone changed
- 1:21 PM Ticket #207 (Display the logged in user's permissions on items) updated by
-
Milestone changed
- 1:21 PM Ticket #195 (Link the "Item is shared" icon in the list view to the Share item popup) updated by
-
Milestone changed
- 1:21 PM Ticket #206 (Display and filter on permisssion in lists) updated by
-
Milestone changed
- 1:20 PM DeveloperInformation edited by
- (diff)
- 1:20 PM Ticket #202 (TestPrintMapFlatFileImporter throws exception: Import failed on line ...) updated by
-
Milestone changed
- 1:20 PM Ticket #199 (Use reporter lists in filter for bioassay sets) updated by
-
Milestone changed
- 1:18 PM Ticket #260 (Remove AffyFeatures table) closed by
- fixed: (In [2314]) Fixes #260: Remove AffyFeatures table Also removed a lot …
- 1:18 PM Changeset [2314] by
- Fixes #260: Remove AffyFeatures table Also removed a lot of unused …
- 1:10 PM Ticket #152 (Error text on rawdata importer plugin) updated by
-
Milestone changed
- 1:10 PM Ticket #1 (column names in flatfile parser) updated by
-
Milestone changed
- 1:10 PM Ticket #213 (Link items in the trashcan to the correct view page for each item) updated by
-
Milestone changed
- 1:10 PM Ticket #210 (HelpText has a unique constraint on externalId property) updated by
-
Milestone changed
- 1:10 PM WikiStart edited by
- (diff)
- 1:09 PM Ticket #186 (The InteractivePlugin.isInContext should return a String instead of boolean) updated by
-
Milestone changed
- 1:09 PM Ticket #182 (Allow plugin parameters to use enumerations where one value is ...) updated by
-
Milestone changed
- 1:09 PM DeveloperInformation created by
- 1:09 PM Ticket #174 (Batch creation of array slides) updated by
-
Milestone changed
- 1:09 PM Ticket #164 (View all items in a project) updated by
-
Milestone changed
- 1:09 PM Ticket #86 (New importer: Plate mapping) updated by
-
Milestone changed
- 1:09 PM Ticket #37 (New/Edit user - Handling of duplicate login) updated by
-
Milestone changed
- 1:09 PM Ticket #3 (Update doesn't create indexes) updated by
-
Milestone changed
- 1:08 PM Ticket #163 (The tree of bioassay sets in the analysis should include ...) updated by
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Milestone changed
- 1:08 PM Ticket #142 (Changing Preference to S or XS prevents from Seeing Annotations ...) updated by
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Milestone changed
- 1:08 PM Ticket #97 (Trashcan functionality) updated by
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Milestone changed
- 1:08 PM Ticket #194 (Permission denied: Not allowed to use B) updated by
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Milestone changed
- 1:08 PM Ticket #192 (Analysis plugins that adds data to an experiment can't commit if the ...) updated by
-
Milestone changed
- 12:58 PM Ticket #261 (hardware and software sharing problem) updated by
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Owner changed
- 12:09 PM WikiStart edited by
- More fixes and additions. (diff)
- 11:59 AM WikiStart edited by
- (diff)
- 11:55 AM WikiStart edited by
- (diff)
- 11:52 AM WikiStart edited by
- Added mailing list information (diff)
- 11:43 AM WikiStart edited by
- (diff)
- 11:40 AM Ticket #261 (hardware and software sharing problem) created by
- Sharing of the software and hardware items among users and groups does …
- 11:23 AM Changeset [2313] by
- Added possibility to create external links for extended properties
- 11:08 AM Changeset [2312] by
- Removed unused import
- 10:41 AM Ticket #150 (Affymetrix support) updated by
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Milestone changed
- 10:39 AM Ticket #260 (Remove AffyFeatures table) updated by
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Status changed
- 10:39 AM Ticket #260 (Remove AffyFeatures table) created by
- This should never be used anyway. It would be too much data.
- 10:21 AM Ticket #222 (Automated test program suite for enhanced test procedure) updated by
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Milestone changed
- 10:21 AM Ticket #221 (Create enhanced test procedure) updated by
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Milestone changed
- 10:16 AM Ticket #144 (Overhaul of BASE web site) updated by
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Milestone changed
- 9:51 AM Ticket #84 (getRequestInformation returns TODO in description fields for many plugins) updated by
-
Milestone changed
- 8:20 AM Changeset [2311] by
- Renamed misspelled file name
May 22, 2006:
- 3:00 PM Changeset [2310] by
- Fixes #256: Filter updates to the Job.ProgressReporterImpl
- 3:00 PM Ticket #256 (Filter updates to the Job.ProgressReporterImpl) closed by
- fixed: (In [2310]) Fixes #256: Filter updates to the Job.ProgressReporterImpl
- 2:56 PM Ticket #256 (Filter updates to the Job.ProgressReporterImpl) updated by
-
Milestone, Status changed
- 2:37 PM Changeset [2309] by
- Added "tools" column to bioassayset list. Links to plot tool, run …
- 1:47 PM Changeset [2308] by
- Hide plugin configuration when there is none to select
- 12:43 PM Changeset [2307] by
- Plot function generates error image with stack trace
- 12:34 PM Changeset [2306] by
- Fixed subversion proterties.
- 12:16 PM Changeset [2305] by
- Removed stray CRLF characters, added missing svn properties.
- 11:37 AM Changeset [2304] by
- Changed copyright statement.
- 11:21 AM Changeset [2303] by
- USE permission is now enough to create bioassay sets
- 10:59 AM Ticket #259 (A job's progress doesn't get upadated when a job is executing in ...) created by
- Probably due to caching of the job information by the second-level cache.
- 10:27 AM Changeset [2302] by
- Fixed Javadoc warnings
- 9:32 AM Ticket #191 (Mobile number field in user info?) updated by
- Maybe we should make User an Extendable item?
- 9:30 AM Ticket #216 (Show deleted directories in file manager) closed by
- fixed: (In [2301]) Fixes #216: Show deleted directories in file manager
- 9:30 AM Changeset [2301] by
- Fixes #216: Show deleted directories in file manager
- 9:08 AM Ticket #216 (Show deleted directories in file manager) updated by
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Status, Milestone changed
- 9:03 AM Ticket #211 (Show list of child bioassay sets/transformations when viewing a ...) closed by
- fixed
May 20, 2006:
- 9:48 AM Changeset [2300] by
- Upgraded demo server to revision 2299.
May 19, 2006:
- 4:09 PM Ticket #254 (Can't run an analysis plugin with Internet explorer) closed by
- fixed: (In [2299]) Fixes #254: Can't run an analysis plugin with Internet …
- 4:09 PM Changeset [2299] by
- Fixes #254: Can't run an analysis plugin with Internet explorer …
- 4:03 PM Changeset [2298] by
- Adds child analysis tree to view pages for bioassay set and transformation
- 4:02 PM Ticket #258 (All view pages with an Annotations tab have duplicate html documents) closed by
- fixed: (In [2297]) Fixes #258: All view pages with an Annotations tab have …
- 4:02 PM Changeset [2297] by
- Fixes #258: All view pages with an Annotations tab have duplicate html …
- 1:37 PM Ticket #258 (All view pages with an Annotations tab have duplicate html documents) created by
- The contents of the Annotations tab is generated by a <jsp:include> …
- 12:18 PM Ticket #247 (Postgres needs a filter when the log() function is used) closed by
- fixed: (In [2296]) Fixes #247: Postgres needs a filter when the log() …
- 12:18 PM Changeset [2296] by
- Fixes #247: Postgres needs a filter when the log() function is used …
- 10:21 AM Ticket #247 (Postgres needs a filter when the log() function is used) updated by
-
Status changed
- 9:52 AM Changeset [2295] by
- Removed debug output
- 9:46 AM Changeset [2294] by
- Added progress bar while loading overview plots
- 9:04 AM Changeset [2293] by
- Fixes #253: Javascript error when clicking a transformation or …
- 9:04 AM Ticket #253 (Javascript error when clicking a transformation or bioassay set in ...) closed by
- fixed: (In [2293]) Fixes #253: Javascript error when clicking a …
- 9:00 AM Ticket #257 (Fix the Jep.nodeToExpression method) created by
- It contains a lot of instanceof operations. Maybe we should …
- 8:57 AM Changeset [2292] by
- Added abs() and exp() functions to Query API and Jep parser. Added …
- 7:55 AM Ticket #247 (Postgres needs a filter when the log() function is used) updated by
-
Priority changed
- 7:51 AM Ticket #247 (Postgres needs a filter when the log() function is used) updated by
- (In [2291]) References #247: Postgres needs a filter when the log() …
- 7:51 AM Changeset [2291] by
- References #247: Postgres needs a filter when the log() function is …
May 18, 2006:
- 4:13 PM Ticket #246 (Postgres doesn't support column aliases in where or having clause) closed by
- fixed: (In [2290]) Fixes #246: Postgres doesn't support column aliases in …
- 4:13 PM Changeset [2290] by
- Fixes #246: Postgres doesn't support column aliases in where or having …
- 4:11 PM Ticket #256 (Filter updates to the Job.ProgressReporterImpl) created by
- This progress reporter reportes progress from plugins to the database …
- 4:03 PM Ticket #248 (Postgres hangs when trying to load data from a filtered bioassayset) updated by
-
Milestone, Status changed
Hmm... it might have been a problem with running out of disk space. … - 1:49 PM Ticket #246 (Postgres doesn't support column aliases in where or having clause) updated by
-
Status changed
- 1:47 PM Changeset [2289] by
- Quote table aliases in dynamic queries.
- 1:31 PM Ticket #255 (Plot function not working when accessed from bioassay set) closed by
- fixed: (In [2288]) Fixes #255: Plot function not working when accessed from …
- 1:31 PM Changeset [2288] by
- Fixes #255: Plot function not working when accessed from bioassay set …
- 1:15 PM Ticket #255 (Plot function not working when accessed from bioassay set) updated by
-
Status changed
- 1:13 PM Ticket #255 (Plot function not working when accessed from bioassay set) updated by
-
Description, Summary changed
- 1:07 PM Ticket #255 (Plot function not working when accessed from bioassay set) created by
- It doesn't matter what you select to plot on the x- and y-axis. The …
- 12:49 PM Ticket #254 (Can't run an analysis plugin with Internet explorer) updated by
-
Status changed
- 12:31 PM Ticket #254 (Can't run an analysis plugin with Internet explorer) created by
- Go to a bioassay set in an experiment. Click the "Run plugin" button. …
- 12:31 PM Changeset [2287] by
- Clarified information on BASE 1.2 database schema version when migrating.
- 12:23 PM Ticket #253 (Javascript error when clicking a transformation or bioassay set in ...) created by
- Goto the "Bioassay sets" tab for an experiment and click on a …
- 12:14 PM Ticket #252 (Make the trashcan smarter when deleting items) updated by
-
Type changed
- 12:14 PM Ticket #252 (Make the trashcan smarter when deleting items) created by
- The trashcan now try to delete all items in one go, which means that …
- 12:00 PM Changeset [2286] by
- Updated the "roles" test suite to follow the latest specifications.
- 11:59 AM Changeset [2285] by
- Check for null progress reporter. Added child name parameter to lowess …
- 11:58 AM Ticket #251 (Row was updated or deleted by another transaction in trashcan) closed by
- fixed: (In [2284]) Fixes #251: Row was updated or deleted by another …
- 11:58 AM Changeset [2284] by
- Fixes #251: Row was updated or deleted by another transaction in …
- 11:47 AM Ticket #235 (Upload file gives JavaScript error in Internet Explorer) closed by
- fixed: (In [2283]) Fixes #235 Upload file gives JavaScript error in Internet …
- 11:47 AM Changeset [2283] by
- Fixes #235 Upload file gives JavaScript error in Internet Explorer
- 11:14 AM Ticket #243 (Set active button is not working in Internet Explorer) closed by
- fixed: (In [2282]) Fixes #243 Set active button is not working in Internet …
- 11:14 AM Changeset [2282] by
- Fixes #243 Set active button is not working in Internet Explorer
- 11:03 AM Ticket #251 (Row was updated or deleted by another transaction in trashcan) created by
- Items mapped by cascade="delete" may result in exception when deleting …
- 9:54 AM Changeset [2281] by
- Checking parameters in the run method.
- 9:53 AM Changeset [2280] by
- Check that an Extendable class is known to Hibernate (otherwise it …
- 9:49 AM Changeset [2279] by
- Added toString() to RawDataType
- 9:48 AM Changeset [2278] by
- Fixes #249: Guest doesn't have permission to create jobs
- 9:48 AM Ticket #249 (Guest doesn't have permission to create jobs) closed by
- fixed: (In [2278]) Fixes #249: Guest doesn't have permission to create jobs
- 9:25 AM Ticket #243 (Set active button is not working in Internet Explorer) updated by
-
Status changed
- 9:22 AM Ticket #250 (Biomaterial quantities are not updated when used) closed by
- fixed: This works on the latest build. Tested on build #2277.
- 8:36 AM Ticket #250 (Biomaterial quantities are not updated when used) updated by
-
Status changed
- 8:33 AM Changeset [2277] by
- Fixes #245 Selected inherited annotations are not saved to database.
- 8:33 AM Ticket #245 (Selected inherited annotations are not saved to database.) closed by
- fixed: (In [2277]) Fixes #245 Selected inherited annotations are not saved to …
- 7:49 AM Ticket #250 (Biomaterial quantities are not updated when used) created by
- I just noticed one error in the BASE2 about the quantity. For …
May 17, 2006:
- 4:03 PM Ticket #249 (Guest doesn't have permission to create jobs) created by
- Which means that they won't be able to participate in analysis of an …
- 2:28 PM Changeset [2276] by
- Spill-over from current context is now filtered out from enumerated …
- 2:19 PM Changeset [2275] by
- Added instructions for the analysis tests.
- 2:03 PM Ticket #248 (Postgres hangs when trying to load data from a filtered bioassayset) created by
- A non-filter bioassay set is displaying ok. The SQL for loading the …
- 1:54 PM Ticket #245 (Selected inherited annotations are not saved to database.) updated by
-
Status changed
- 1:51 PM Ticket #238 (JavaScript error while saving a new item if one has clicked on the ...) closed by
- fixed: (In [2274]) Fixes #238 JavaScript error while saving a new item if one …
- 1:51 PM Changeset [2274] by
- Fixes #238 JavaScript error while saving a new item if one has clicked …
- 12:26 PM Ticket #247 (Postgres needs a filter when the log() function is used) created by
- In contrast to MySQL which ignores the log of negative values, …
- 12:23 PM Ticket #246 (Postgres doesn't support column aliases in where or having clause) created by
- This is not considered in the Query API:s SelectedExpression object …
- 11:31 AM Ticket #245 (Selected inherited annotations are not saved to database.) created by
- The selected inherited annotations are not saved in the following …
- 11:24 AM Changeset [2273] by
- Fixed PermissionDeniedException when creating a new bioassay set …
- 11:12 AM Ticket #240 (JavaScript error when importing raw data (Internet Explorer)) closed by
- fixed: (In [2272]) Fixes #240: JavaScript error when importing raw data …
- 11:12 AM Changeset [2272] by
- Fixes #240: JavaScript error when importing raw data (Internet Explorer)
- 11:00 AM Ticket #240 (JavaScript error when importing raw data (Internet Explorer)) updated by
-
Status changed
- 10:58 AM Changeset [2271] by
- Fixed rare problem causing an exception if a job has been started …
- 10:55 AM Tickets #234,236,244 batch updated by
- fixed: (In [2270]) Fixes #234: Reporter map importer is missing settings …
- 10:55 AM Changeset [2270] by
- Fixes #234: Reporter map importer is missing settings found in other …
- 10:33 AM Changeset [2269] by
- Removed debug output.
- 10:25 AM Ticket #238 (JavaScript error while saving a new item if one has clicked on the ...) updated by
- This seems to be common for all items with inherited annotations.
- 9:11 AM Ticket #244 (Add support for meta coordinates in ReporterMapFlatFileImporter) created by
- The current implementation only supports block, row, column coordinates.
- 8:53 AM Ticket #236 (Reporter map importer doesn't require an array design) updated by
-
Status changed
- 8:53 AM Ticket #234 (Reporter map importer is missing settings found in other importers) updated by
-
Status changed
- 8:52 AM Ticket #239 (PermissionDeniedException when creating images if not logged in as root) closed by
- fixed: (In [2268]) Fixes #239: PermissionDeniedException when creating images …
- 8:52 AM Changeset [2268] by
- Fixes #239: PermissionDeniedException when creating images if not …
- 8:50 AM Ticket #237 (Create button on Array LIMS - Array slides is not working in Internet ...) closed by
- fixed: (In [2267]) Fixes #237: Create button on Array LIMS - Array slides is …
- 8:50 AM Changeset [2267] by
- Fixes #237: Create button on Array LIMS - Array slides is not working …
- 8:49 AM Ticket #238 (JavaScript error while saving a new item if one has clicked on the ...) updated by
-
Status changed
- 8:38 AM Ticket #243 (Set active button is not working in Internet Explorer) updated by
-
Owner changed
- 8:38 AM Ticket #235 (Upload file gives JavaScript error in Internet Explorer) updated by
-
Owner changed
- 8:37 AM Ticket #238 (JavaScript error while saving a new item if one has clicked on the ...) updated by
-
Owner changed
May 16, 2006:
- 4:06 PM Ticket #237 (Create button on Array LIMS - Array slides is not working in Internet ...) updated by
-
Status changed
- 3:53 PM Ticket #150 (Affymetrix support) updated by
-
Component changed
- 3:48 PM Changeset [2266] by
- Changed default permissions for reporters and reporter types so that …
- 3:46 PM Changeset [2265] by
- Fixed error message if directory is null.
- 3:46 PM Changeset [2264] by
- Fixed NullPointerException if a quota group had undefined quota values …
- 3:44 PM Changeset [2263] by
- Fixes #233: Must have an index on the Features table with block, row …
- 3:44 PM Ticket #233 (Must have an index on the Features table with block, row and column) closed by
- fixed: (In [2263]) Fixes #233: Must have an index on the Features table with …
- 3:44 PM Changeset [2262] by
- Throws exception if mapped column is not found among headers
- 3:43 PM Changeset [2261] by
- Added possibility to overwrite progress messages on the same line.
- 3:42 PM Changeset [2260] by
- Better error reporting if invalid data is found Changed name to follow …
- 3:41 PM Changeset [2259] by
- 'Roles' test program updated to follow the latest instructions.
- 3:39 PM Changeset [2258] by
- Updated test documentation
- 2:38 PM Ticket #243 (Set active button is not working in Internet Explorer) created by
- Goto: View -> Projects Click on a project and then on the "Set …
- 2:33 PM Ticket #242 (Investigate if it would be better to preload features when importing ...) created by
- We need the features for validating the raw data and connecting with …
- 12:15 PM Ticket #241 (Files that have been used for parameters to a job can't be deleted properly) created by
- The File.isUsed() function return false, but you get a database …
- 11:43 AM Ticket #240 (JavaScript error when importing raw data (Internet Explorer)) created by
- When importing raw data and selecting the raw bioassay parameter the …
- 11:32 AM Ticket #239 (PermissionDeniedException when creating images if not logged in as root) created by
- If you are not logged in as root you will get a …
- 11:15 AM Ticket #238 (JavaScript error while saving a new item if one has clicked on the ...) created by
- Create a new biosource. Click on "Inherit annotations". Click on …
- 11:06 AM Ticket #237 (Create button on Array LIMS - Array slides is not working in Internet ...) created by
- Clicking on the "Create..." button gives the following error: Rad: 80 …
- 11:01 AM Ticket #236 (Reporter map importer doesn't require an array design) created by
- It must have an array design to be able to import features.
- 10:55 AM Ticket #235 (Upload file gives JavaScript error in Internet Explorer) created by
- Rad: 65 Tecken: 1 Fel: Ett object förväntades But the upload function …
- 10:41 AM Ticket #234 (Reporter map importer is missing settings found in other importers) created by
- For example, it has no min or max data columns. Missing settings …
- 8:57 AM Ticket #233 (Must have an index on the Features table with block, row and column) created by
- Raw data import when an array design is connected is *very* slow …
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