Timeline



May 24, 2006:

2:55 PM Changeset [2327] by Nicklas Nordborg
Added documentation for the plot servlet and plot utilities
12:20 PM Changeset [2326] by Nicklas Nordborg
Help text for plugin sections is now displayed in the web client.
11:51 AM Changeset [2325] by Nicklas Nordborg
Added and cleaned up some JavaDoc?
11:51 AM Ticket #84 (getRequestInformation returns TODO in description fields for many plugins) closed by Nicklas Nordborg
fixed: (In [2324]) Fixes #84: getRequestInformation returns TODO in …
11:50 AM Changeset [2324] by Nicklas Nordborg
Fixes #84: getRequestInformation returns TODO in description fields …
11:43 AM DeveloperInformation edited by Jari Häkkinen
(diff)
11:39 AM WikiStart edited by Jari Häkkinen
Added todo link. Clarified text on plug-ins. (diff)
11:11 AM WikiStart edited by Jari Häkkinen
Moved mailing list to another page. (diff)
11:10 AM MailingLists created by Jari Häkkinen
11:07 AM Changeset [2323] by Jari Häkkinen
Added news item about the new BASE web site. Removed obsolete …
10:53 AM WikiStart edited by Jari Häkkinen
Added demo server information. (diff)
10:26 AM WikiStart edited by Jari Häkkinen
Spelling error fixed (diff)
10:26 AM Changeset [2322] by Nicklas Nordborg
Fixed some Javadoc items
10:25 AM Changeset [2321] by Nicklas Nordborg
Log SQL statements
9:41 AM Changeset [2320] by Nicklas Nordborg
Now finds the parent <tbl:table> tag.
9:39 AM Changeset [2319] by Nicklas Nordborg
Validate that no expressions are null
9:22 AM Changeset [2318] by Nicklas Nordborg
Set row and column coordinate of a feature
9:03 AM Ticket #209 (Add JepMapper to FlatFileParser) closed by Nicklas Nordborg
fixed: (In [2317]) Fixes #209: Add JepMapper? to FlatFileParser?
9:03 AM Changeset [2317] by Nicklas Nordborg
Fixes #209: Add JepMapper? to FlatFileParser?
2:35 AM Changeset [2316] by Jari Häkkinen
Moved download information to the Trac wiki.
2:29 AM DownloadPage edited by Jari Häkkinen
(diff)
2:20 AM DownloadPage edited by Jari Häkkinen
First finalized version. (diff)
2:04 AM DownloadPage edited by Jari Häkkinen
(diff)
1:28 AM DownloadPage edited by Jari Häkkinen
(diff)
12:53 AM DownloadPage created by Jari Häkkinen
12:49 AM WikiStart edited by Jari Häkkinen
(diff)

May 23, 2006:

3:01 PM Ticket #263 (Update to latest versions of 3rd-party software) created by Nicklas Nordborg
Well, maybe we don't need to update everything, but we definitely have …
2:50 PM Changeset [2315] by Nicklas Nordborg
Now contains correct jar file information and version numbers
2:31 PM WikiStart edited by Jari Häkkinen
(diff)
1:42 PM Ticket #262 (Overview of an experiment) created by Nicklas Nordborg
Create a plugin or something that generates an overview of all items …
1:20 PM DeveloperInformation edited by Jari Häkkinen
(diff)
1:18 PM Ticket #260 (Remove AffyFeatures table) closed by Nicklas Nordborg
fixed: (In [2314]) Fixes #260: Remove AffyFeatures? table Also removed a lot …
1:18 PM Changeset [2314] by Nicklas Nordborg
Fixes #260: Remove AffyFeatures? table Also removed a lot of unused …
1:10 PM WikiStart edited by Jari Häkkinen
(diff)
1:09 PM DeveloperInformation created by Jari Häkkinen
12:09 PM WikiStart edited by Jari Häkkinen
More fixes and additions. (diff)
11:59 AM WikiStart edited by Jari Häkkinen
(diff)
11:55 AM WikiStart edited by Jari Häkkinen
(diff)
11:52 AM WikiStart edited by Jari Häkkinen
Added mailing list information (diff)
11:43 AM WikiStart edited by Jari Häkkinen
(diff)
11:40 AM Ticket #261 (hardware and software sharing problem) created by Petr Divina <divina@…>
Sharing of the software and hardware items among users and groups does …
11:23 AM Changeset [2313] by Nicklas Nordborg
Added possibility to create external links for extended properties
11:08 AM Changeset [2312] by Nicklas Nordborg
Removed unused import
10:39 AM Ticket #260 (Remove AffyFeatures table) created by Nicklas Nordborg
This should never be used anyway. It would be too much data.
8:20 AM Changeset [2311] by Nicklas Nordborg
Renamed misspelled file name

May 22, 2006:

3:00 PM Changeset [2310] by Nicklas Nordborg
Fixes #256: Filter updates to the Job.ProgressReporterImpl?
3:00 PM Ticket #256 (Filter updates to the Job.ProgressReporterImpl) closed by Nicklas Nordborg
fixed: (In [2310]) Fixes #256: Filter updates to the Job.ProgressReporterImpl?
2:37 PM Changeset [2309] by Nicklas Nordborg
Added "tools" column to bioassayset list. Links to plot tool, run …
1:47 PM Changeset [2308] by Nicklas Nordborg
Hide plugin configuration when there is none to select
12:43 PM Changeset [2307] by Nicklas Nordborg
Plot function generates error image with stack trace
12:34 PM Changeset [2306] by Jari Häkkinen
Fixed subversion proterties.
12:16 PM Changeset [2305] by Jari Häkkinen
Removed stray CRLF characters, added missing svn properties.
11:37 AM Changeset [2304] by Jari Häkkinen
Changed copyright statement.
11:21 AM Changeset [2303] by Nicklas Nordborg
USE permission is now enough to create bioassay sets
10:59 AM Ticket #259 (A job's progress doesn't get upadated when a job is executing in ...) created by Nicklas Nordborg
Probably due to caching of the job information by the second-level cache.
10:27 AM Changeset [2302] by Nicklas Nordborg
Fixed Javadoc warnings
9:30 AM Ticket #216 (Show deleted directories in file manager) closed by Nicklas Nordborg
fixed: (In [2301]) Fixes #216: Show deleted directories in file manager
9:30 AM Changeset [2301] by Nicklas Nordborg
Fixes #216: Show deleted directories in file manager
9:03 AM Ticket #211 (Show list of child bioassay sets/transformations when viewing a ...) closed by Nicklas Nordborg
fixed

May 20, 2006:

9:48 AM Changeset [2300] by Jari Häkkinen
Upgraded demo server to revision 2299.

May 19, 2006:

4:09 PM Ticket #254 (Can't run an analysis plugin with Internet explorer) closed by Nicklas Nordborg
fixed: (In [2299]) Fixes #254: Can't run an analysis plugin with Internet …
4:09 PM Changeset [2299] by Nicklas Nordborg
Fixes #254: Can't run an analysis plugin with Internet explorer …
4:03 PM Changeset [2298] by Nicklas Nordborg
Adds child analysis tree to view pages for bioassay set and transformation
4:02 PM Ticket #258 (All view pages with an Annotations tab have duplicate html documents) closed by Nicklas Nordborg
fixed: (In [2297]) Fixes #258: All view pages with an Annotations tab have …
4:02 PM Changeset [2297] by Nicklas Nordborg
Fixes #258: All view pages with an Annotations tab have duplicate html …
1:37 PM Ticket #258 (All view pages with an Annotations tab have duplicate html documents) created by Nicklas Nordborg
The contents of the Annotations tab is generated by a <jsp:include> …
12:18 PM Ticket #247 (Postgres needs a filter when the log() function is used) closed by Nicklas Nordborg
fixed: (In [2296]) Fixes #247: Postgres needs a filter when the log() …
12:18 PM Changeset [2296] by Nicklas Nordborg
Fixes #247: Postgres needs a filter when the log() function is used …
9:52 AM Changeset [2295] by Nicklas Nordborg
Removed debug output
9:46 AM Changeset [2294] by Nicklas Nordborg
Added progress bar while loading overview plots
9:04 AM Changeset [2293] by Nicklas Nordborg
Fixes #253: Javascript error when clicking a transformation or …
9:04 AM Ticket #253 (Javascript error when clicking a transformation or bioassay set in ...) closed by Nicklas Nordborg
fixed: (In [2293]) Fixes #253: Javascript error when clicking a …
9:00 AM Ticket #257 (Fix the Jep.nodeToExpression method) created by Nicklas Nordborg
It contains a lot of instanceof operations. Maybe we should …
8:57 AM Changeset [2292] by Nicklas Nordborg
Added abs() and exp() functions to Query API and Jep parser. Added …
7:51 AM Changeset [2291] by Nicklas Nordborg
References #247: Postgres needs a filter when the log() function is …

May 18, 2006:

4:13 PM Ticket #246 (Postgres doesn't support column aliases in where or having clause) closed by Nicklas Nordborg
fixed: (In [2290]) Fixes #246: Postgres doesn't support column aliases in …
4:13 PM Changeset [2290] by Nicklas Nordborg
Fixes #246: Postgres doesn't support column aliases in where or having …
4:11 PM Ticket #256 (Filter updates to the Job.ProgressReporterImpl) created by Nicklas Nordborg
This progress reporter reportes progress from plugins to the database …
1:47 PM Changeset [2289] by Nicklas Nordborg
Quote table aliases in dynamic queries.
1:31 PM Ticket #255 (Plot function not working when accessed from bioassay set) closed by Nicklas Nordborg
fixed: (In [2288]) Fixes #255: Plot function not working when accessed from …
1:31 PM Changeset [2288] by Nicklas Nordborg
Fixes #255: Plot function not working when accessed from bioassay set …
1:07 PM Ticket #255 (Plot function not working when accessed from bioassay set) created by Nicklas Nordborg
It doesn't matter what you select to plot on the x- and y-axis. The …
12:31 PM Ticket #254 (Can't run an analysis plugin with Internet explorer) created by Nicklas Nordborg
Go to a bioassay set in an experiment. Click the "Run plugin" button. …
12:31 PM Changeset [2287] by Jari Häkkinen
Clarified information on BASE 1.2 database schema version when migrating.
12:23 PM Ticket #253 (Javascript error when clicking a transformation or bioassay set in ...) created by Nicklas Nordborg
Goto the "Bioassay sets" tab for an experiment and click on a …
12:14 PM Ticket #252 (Make the trashcan smarter when deleting items) created by Nicklas Nordborg
The trashcan now try to delete all items in one go, which means that …
12:00 PM Changeset [2286] by Nicklas Nordborg
Updated the "roles" test suite to follow the latest specifications.
11:59 AM Changeset [2285] by Nicklas Nordborg
Check for null progress reporter. Added child name parameter to lowess …
11:58 AM Ticket #251 (Row was updated or deleted by another transaction in trashcan) closed by Nicklas Nordborg
fixed: (In [2284]) Fixes #251: Row was updated or deleted by another …
11:58 AM Changeset [2284] by Nicklas Nordborg
Fixes #251: Row was updated or deleted by another transaction in …
11:47 AM Ticket #235 (Upload file gives JavaScript error in Internet Explorer) closed by Martin Svensson
fixed: (In [2283]) Fixes #235 Upload file gives JavaScript? error in Internet …
11:47 AM Changeset [2283] by Martin Svensson
Fixes #235 Upload file gives JavaScript? error in Internet Explorer
11:14 AM Ticket #243 (Set active button is not working in Internet Explorer) closed by Martin Svensson
fixed: (In [2282]) Fixes #243 Set active button is not working in Internet …
11:14 AM Changeset [2282] by Martin Svensson
Fixes #243 Set active button is not working in Internet Explorer
11:03 AM Ticket #251 (Row was updated or deleted by another transaction in trashcan) created by Nicklas Nordborg
Items mapped by cascade="delete" may result in exception when deleting …
9:54 AM Changeset [2281] by Nicklas Nordborg
Checking parameters in the run method.
9:53 AM Changeset [2280] by Nicklas Nordborg
Check that an Extendable class is known to Hibernate (otherwise it …
9:49 AM Changeset [2279] by Nicklas Nordborg
Added toString() to RawDataType?
9:48 AM Changeset [2278] by Nicklas Nordborg
Fixes #249: Guest doesn't have permission to create jobs
9:48 AM Ticket #249 (Guest doesn't have permission to create jobs) closed by Nicklas Nordborg
fixed: (In [2278]) Fixes #249: Guest doesn't have permission to create jobs
9:22 AM Ticket #250 (Biomaterial quantities are not updated when used) closed by Martin Svensson
fixed: This works on the latest build. Tested on build #2277.
8:33 AM Changeset [2277] by Martin Svensson
Fixes #245 Selected inherited annotations are not saved to database.
8:33 AM Ticket #245 (Selected inherited annotations are not saved to database.) closed by Martin Svensson
fixed: (In [2277]) Fixes #245 Selected inherited annotations are not saved to …
7:49 AM Ticket #250 (Biomaterial quantities are not updated when used) created by nicklas (mail from Longfei Yu <lyu@…
I just noticed one error in the BASE2 about the quantity. For …

May 17, 2006:

4:03 PM Ticket #249 (Guest doesn't have permission to create jobs) created by Nicklas Nordborg
Which means that they won't be able to participate in analysis of an …
2:28 PM Changeset [2276] by Nicklas Nordborg
Spill-over from current context is now filtered out from enumerated …
2:19 PM Changeset [2275] by Nicklas Nordborg
Added instructions for the analysis tests.
2:03 PM Ticket #248 (Postgres hangs when trying to load data from a filtered bioassayset) created by Nicklas Nordborg
A non-filter bioassay set is displaying ok. The SQL for loading the …
1:51 PM Ticket #238 (JavaScript error while saving a new item if one has clicked on the ...) closed by Martin Svensson
fixed: (In [2274]) Fixes #238 JavaScript? error while saving a new item if one …
1:51 PM Changeset [2274] by Martin Svensson
Fixes #238 JavaScript? error while saving a new item if one has clicked …
12:26 PM Ticket #247 (Postgres needs a filter when the log() function is used) created by Nicklas Nordborg
In contrast to MySQL which ignores the log of negative values, …
12:23 PM Ticket #246 (Postgres doesn't support column aliases in where or having clause) created by Nicklas Nordborg
This is not considered in the Query API:s SelectedExpression? object …
11:31 AM Ticket #245 (Selected inherited annotations are not saved to database.) created by Martin Svensson
The selected inherited annotations are not saved in the following …
11:24 AM Changeset [2273] by Nicklas Nordborg
Fixed PermissionDeniedException? when creating a new bioassay set …
11:12 AM Ticket #240 (JavaScript error when importing raw data (Internet Explorer)) closed by Nicklas Nordborg
fixed: (In [2272]) Fixes #240: JavaScript? error when importing raw data …
11:12 AM Changeset [2272] by Nicklas Nordborg
Fixes #240: JavaScript? error when importing raw data (Internet Explorer)
10:58 AM Changeset [2271] by Nicklas Nordborg
Fixed rare problem causing an exception if a job has been started …
10:55 AM Tickets #234,​236,​244 batch updated by Nicklas Nordborg
fixed: (In [2270]) Fixes #234: Reporter map importer is missing settings …
10:55 AM Changeset [2270] by Nicklas Nordborg
Fixes #234: Reporter map importer is missing settings found in other …
10:33 AM Changeset [2269] by Nicklas Nordborg
Removed debug output.
9:11 AM Ticket #244 (Add support for meta coordinates in ReporterMapFlatFileImporter) created by Nicklas Nordborg
The current implementation only supports block, row, column coordinates.
8:52 AM Ticket #239 (PermissionDeniedException when creating images if not logged in as root) closed by Nicklas Nordborg
fixed: (In [2268]) Fixes #239: PermissionDeniedException? when creating images …
8:52 AM Changeset [2268] by Nicklas Nordborg
Fixes #239: PermissionDeniedException? when creating images if not …
8:50 AM Ticket #237 (Create button on Array LIMS - Array slides is not working in Internet ...) closed by Nicklas Nordborg
fixed: (In [2267]) Fixes #237: Create button on Array LIMS - Array slides is …
8:50 AM Changeset [2267] by Nicklas Nordborg
Fixes #237: Create button on Array LIMS - Array slides is not working …

May 16, 2006:

3:48 PM Changeset [2266] by Nicklas Nordborg
Changed default permissions for reporters and reporter types so that …
3:46 PM Changeset [2265] by Nicklas Nordborg
Fixed error message if directory is null.
3:46 PM Changeset [2264] by Nicklas Nordborg
Fixed NullPointerException? if a quota group had undefined quota values …
3:44 PM Changeset [2263] by Nicklas Nordborg
Fixes #233: Must have an index on the Features table with block, row …
3:44 PM Ticket #233 (Must have an index on the Features table with block, row and column) closed by Nicklas Nordborg
fixed: (In [2263]) Fixes #233: Must have an index on the Features table with …
3:44 PM Changeset [2262] by Nicklas Nordborg
Throws exception if mapped column is not found among headers
3:43 PM Changeset [2261] by Nicklas Nordborg
Added possibility to overwrite progress messages on the same line.
3:42 PM Changeset [2260] by Nicklas Nordborg
Better error reporting if invalid data is found Changed name to follow …
3:41 PM Changeset [2259] by Nicklas Nordborg
'Roles' test program updated to follow the latest instructions.
3:39 PM Changeset [2258] by Nicklas Nordborg
Updated test documentation
2:38 PM Ticket #243 (Set active button is not working in Internet Explorer) created by Nicklas Nordborg
Goto: View -> Projects Click on a project and then on the "Set …
2:33 PM Ticket #242 (Investigate if it would be better to preload features when importing ...) created by Nicklas Nordborg
We need the features for validating the raw data and connecting with …
12:15 PM Ticket #241 (Files that have been used for parameters to a job can't be deleted properly) created by Nicklas Nordborg
The File.isUsed() function return false, but you get a database …
11:43 AM Ticket #240 (JavaScript error when importing raw data (Internet Explorer)) created by Nicklas Nordborg
When importing raw data and selecting the raw bioassay parameter the …
11:32 AM Ticket #239 (PermissionDeniedException when creating images if not logged in as root) created by Nicklas Nordborg
If you are not logged in as root you will get a …
11:15 AM Ticket #238 (JavaScript error while saving a new item if one has clicked on the ...) created by Nicklas Nordborg
Create a new biosource. Click on "Inherit annotations". Click on …
11:06 AM Ticket #237 (Create button on Array LIMS - Array slides is not working in Internet ...) created by Nicklas Nordborg
Clicking on the "Create..." button gives the following error: Rad: 80 …
11:01 AM Ticket #236 (Reporter map importer doesn't require an array design) created by Nicklas Nordborg
It must have an array design to be able to import features.
10:55 AM Ticket #235 (Upload file gives JavaScript error in Internet Explorer) created by Nicklas Nordborg
Rad: 65 Tecken: 1 Fel: Ett object förväntades But the upload function …
10:41 AM Ticket #234 (Reporter map importer is missing settings found in other importers) created by Nicklas Nordborg
For example, it has no min or max data columns. Missing settings …
8:57 AM Ticket #233 (Must have an index on the Features table with block, row and column) created by Nicklas Nordborg
Raw data import when an array design is connected is *very* slow …

May 15, 2006:

12:04 PM Changeset [2257] by Nicklas Nordborg
Fixed NullPointerException?
11:41 AM Changeset [2256] by Nicklas Nordborg
Fixes #232: Only root can list events for biomaterials
11:41 AM Ticket #232 (Only root can list events for biomaterials) closed by Nicklas Nordborg
fixed: (In [2256]) Fixes #232: Only root can list events for biomaterials
11:32 AM Changeset [2255] by Nicklas Nordborg
Fixed a PermissionDeniedException?
11:29 AM Changeset [2254] by Nicklas Nordborg
Fixes #230: Changing the used amount for the parent sample of an …
11:29 AM Ticket #230 (Changing the used amount for the parent sample of an extract is not ...) closed by Nicklas Nordborg
fixed: (In [2254]) Fixes #230: Changing the used amount for the parent sample …
9:35 AM Changeset [2253] by Nicklas Nordborg
Added test code for user role
9:31 AM Ticket #231 (Reporters -> New.. opens the form in the existing window and not in a ...) closed by Martin Svensson
fixed: (In [2252]) Fixes #231: Reporters -> New.. opens the form in the …
9:31 AM Changeset [2252] by Martin Svensson
Fixes #231: Reporters -> New.. opens the form in the existing window …
9:21 AM Ticket #232 (Only root can list events for biomaterials) created by Nicklas Nordborg
The query that returns BioMaterialEvent:s only returns items if the …
9:21 AM Ticket #231 (Reporters -> New.. opens the form in the existing window and not in a ...) created by Martin Svensson

May 12, 2006:

4:31 PM Changeset [2251] by Johan Enell
can create a serial basefile
4:28 PM Changeset [2250] by Johan Enell
added id to propetyToColumn map
10:37 AM Changeset [2249] by Nicklas Nordborg
Added first version of automated tests for roles. References #221 and #222.
10:26 AM Changeset [2248] by Nicklas Nordborg
Fixed exception when the generated MD5 starts with a digit.
9:32 AM Ticket #228 (Menus for File -> New -> XXX is linked to wrong JSP pages) closed by Martin Svensson
fixed: (In [2247]) Fixes #228. Menus for File -> New -> XXX is linked to …
9:32 AM Changeset [2247] by Martin Svensson
Fixes #228. Menus for File -> New -> XXX is linked to wrong JSP pages. …

May 11, 2006:

2:49 PM Changeset [2246] by Nicklas Nordborg
Fixed placement of buttons
2:49 PM Changeset [2245] by Nicklas Nordborg
Changed annotation type to biosource for one of the annotations
1:39 PM Changeset [2244] by Martin Svensson
Updated test procedure for USER
1:32 PM Ticket #230 (Changing the used amount for the parent sample of an extract is not ...) created by Nicklas Nordborg
A workaround is to remove the parent, save the extract and then re-add …
1:17 PM Ticket #229 (Can't log in using the encrypt password function when the password is ...) closed by Nicklas Nordborg
fixed: (In [2243]) Fixes #229: Can't log in using the encrypt password …
1:17 PM Changeset [2243] by Nicklas Nordborg
Fixes #229: Can't log in using the encrypt password function when the …
12:20 PM Ticket #229 (Can't log in using the encrypt password function when the password is ...) created by Nicklas Nordborg
Seems to be a problem in the core that removes leading 0:s from the …
12:03 PM Changeset [2242] by Nicklas Nordborg
Fixed bug in query for Postgres/MySQL
11:53 AM Changeset [2241] by Nicklas Nordborg
Fixes #226: PermissionDeniedException? when logging in for users that …
11:53 AM Ticket #226 (PermissionDeniedException when logging in for users that have been ...) closed by Nicklas Nordborg
fixed: (In [2241]) Fixes #226: PermissionDeniedException? when logging in for …
11:38 AM Changeset [2240] by Nicklas Nordborg
Fixes #227: PermissionDeniedException? when logging in if a user has …
11:38 AM Ticket #227 (PermissionDeniedException when logging in if a user has been assigned ...) closed by Nicklas Nordborg
fixed: (In [2240]) Fixes #227: PermissionDeniedException? when logging in if a …
11:14 AM Ticket #228 (Menus for File -> New -> XXX is linked to wrong JSP pages) created by nicklas (mail from Longfei Yu <at5863@…
When I added data to the BASE2 system, I got a very tricky problem. …
9:18 AM Ticket #227 (PermissionDeniedException when logging in if a user has been assigned ...) created by Nicklas Nordborg
9:14 AM Ticket #226 (PermissionDeniedException when logging in for users that have been ...) created by Nicklas Nordborg
The specifications say that a user gets read permission on the quota …
9:10 AM Changeset [2239] by Nicklas Nordborg
Fixes #223: Multiplicity should have a default value of 1 for new …
9:10 AM Ticket #223 (Multiplicity should have a default value of 1 for new annotation types) closed by Nicklas Nordborg
fixed: (In [2239]) Fixes #223: Multiplicity should have a default value of 1 …
9:08 AM Changeset [2238] by Nicklas Nordborg
Fixes #225: Power user doesn't have USE permission for protocol types …
9:08 AM Ticket #225 (Power user doesn't have USE permission for protocol types) closed by Nicklas Nordborg
fixed: (In [2238]) Fixes #225: Power user doesn't have USE permission for …
9:01 AM Changeset [2237] by Nicklas Nordborg
Fixes #224: Power user doesn't have access to …
9:01 AM Ticket #224 (Power user doesn't have access to Software/Hardware/Protocols menu items) closed by Nicklas Nordborg
fixed: (In [2237]) Fixes #224: Power user doesn't have access to …
8:32 AM Changeset [2236] by Nicklas Nordborg
Updated test procedures
8:21 AM Ticket #225 (Power user doesn't have USE permission for protocol types) created by Nicklas Nordborg
This is needed since, the power user has create permission for protocols.
8:20 AM Ticket #224 (Power user doesn't have access to Software/Hardware/Protocols menu items) created by Nicklas Nordborg
The power user has create permissio, but the mentioned menu items are …
8:17 AM Ticket #223 (Multiplicity should have a default value of 1 for new annotation types) created by Nicklas Nordborg
Now, it is empty which means unlimiteed number of annotations.

May 10, 2006:

4:29 PM Changeset [2235] by Martin Svensson
Added test procedure for user
4:06 PM Changeset [2234] by Nicklas Nordborg
Updated test procedure for power user
2:57 PM Changeset [2233] by Martin Svensson
Correct misspelling
1:25 PM Changeset [2232] by Nicklas Nordborg
Added some test instructions for root, admin and power user
1:15 PM Ticket #174 (Batch creation of array slides) closed by Martin Svensson
fixed: (In [2231]) Fixes #174 Batch creation of array slides.
1:15 PM Changeset [2231] by Martin Svensson
Fixes #174 Batch creation of array slides.
11:47 AM Changeset [2230] by Martin Svensson
Added documents to use when to write permissions test procedures
11:18 AM Ticket #222 (Automated test program suite for enhanced test procedure) created by Nicklas Nordborg
See ticket #221 for background information. This ticket involves the …
11:14 AM Ticket #221 (Create enhanced test procedure) created by Nicklas Nordborg
Create a test procedure testing a common scenario. 1. Starting with …
9:39 AM Ticket #220 (Plugin permissions) created by Nicklas Nordborg
Plugins should have permissions on their own. The permissions are …
8:49 AM Changeset [2229] by Nicklas Nordborg
Fixes #219: Can't inherit annotation for a new item Instead of a …
8:49 AM Ticket #219 (Can't inherit annotation for a new item) closed by Nicklas Nordborg
fixed: (In [2229]) Fixes #219: Can't inherit annotation for a new item …
8:36 AM Changeset [2228] by Nicklas Nordborg
Fixes #218: Edit experiment goes to new experiment
8:36 AM Ticket #218 (Edit experiment goes to new experiment) closed by Nicklas Nordborg
fixed: (In [2228]) Fixes #218: Edit experiment goes to new experiment
8:34 AM Changeset [2227] by Nicklas Nordborg
Fixed NullPointerException? if base.config isn't found. Now throws …
8:13 AM Ticket #219 (Can't inherit annotation for a new item) created by nicklas (mail from Longfei Yu <lyu@…
I just met a bug when I just tested, and wanted to create a new item, …
8:04 AM Ticket #218 (Edit experiment goes to new experiment) created by nicklas (mail from Longfei Yu <lyu@…
I have noticed there is a little bug about editing the experiment. In …

May 9, 2006:

4:03 PM Changeset [2226] by Nicklas Nordborg
Added CaseExpression?
2:57 PM Changeset [2225] by Nicklas Nordborg
Fixes #86: New importer: Plate mapping
2:57 PM Ticket #86 (New importer: Plate mapping) closed by Nicklas Nordborg
fixed: (In [2225]) Fixes #86: New importer: Plate mapping
1:55 PM Changeset [2224] by Nicklas Nordborg
Added wizard toolbar images.
9:37 AM Changeset [2223] by Nicklas Nordborg
Traschcan now tries to remove as many used items it can by looping …
9:31 AM Ticket #217 (Delete entire directory structure) created by Nicklas Nordborg
When you select a directory and "Delete" it, only that directory is …
9:29 AM Ticket #216 (Show deleted directories in file manager) created by Nicklas Nordborg
It should be possible to include directories with the removed flag in …
9:06 AM Ticket #215 (Incorrect use of DynamicSpotQuery in table view, plot function, filter ...) created by Nicklas Nordborg
If a bioassayset contains merged data, ie. data where one data cube …
8:52 AM Ticket #200 (Add 'Expression builder' interface) closed by Nicklas Nordborg
fixed: (In [2222]) Fixes #200: Add 'Expression builder' interface Added Label …
8:52 AM Changeset [2222] by Nicklas Nordborg
Fixes #200: Add 'Expression builder' interface Added Label tag to …
1:06 AM Changeset [2221] by Jari Häkkinen
Updated demo server to revision 2220.

May 8, 2006:

2:39 PM Changeset [2220] by Johan Enell
DbControl? makes a flush for every action delete

May 5, 2006:

8:49 PM Changeset [2219] by Nicklas Nordborg
Removed @hibernate.class tag (xdoclet complained on windows)
4:07 PM Ticket #198 (New PluginDefinition name) closed by Nicklas Nordborg
wontfix: This is intentional as the name is set by the plugin itself.
4:00 PM Ticket #164 (View all items in a project) closed by Nicklas Nordborg
fixed: (In [2218]) Fixes #164: View all items in a project Some updates to …
4:00 PM Changeset [2218] by Nicklas Nordborg
Fixes #164: View all items in a project Some updates to trashcan to …
1:18 PM Ticket #214 (Inherit annotations throw NullPointerException) closed by Nicklas Nordborg
fixed: (In [2217]) Fixes #214: Inherit annotations throw …
1:18 PM Changeset [2217] by Nicklas Nordborg
Fixes #214: Inherit annotations throw NullPointerException?. Happened …
12:24 PM Ticket #214 (Inherit annotations throw NullPointerException) created by nicklas (mail from Longfei Yu <lyu@…
Actually, I got the error when I click the inherited annotation in …
12:21 PM Ticket #213 (Link items in the trashcan to the correct view page for each item) closed by Nicklas Nordborg
fixed: (In [2216]) Fixes #213: Link items in the trashcan to the correct view …
12:21 PM Changeset [2216] by Nicklas Nordborg
Fixes #213: Link items in the trashcan to the correct view page for …

May 4, 2006:

3:05 PM Changeset [2215] by Jari Häkkinen
Upgraded demo server. Added info about updated database/index.
1:33 PM Changeset [2214] by Nicklas Nordborg
Added image needed by trashcan
1:32 PM Ticket #97 (Trashcan functionality) closed by Nicklas Nordborg
fixed: (In [2213]) Fixes #97: Trashcan functionality
1:32 PM Changeset [2213] by Nicklas Nordborg
Fixes #97: Trashcan functionality
1:22 PM Ticket #213 (Link items in the trashcan to the correct view page for each item) created by Nicklas Nordborg
See also tickets #20 and #157. It would probably make sense to have …
9:10 AM Ticket #212 (Array slide import plugin) created by Nicklas Nordborg
Another way (see #174) to create multiple array slides in one go if …
8:22 AM Ticket #210 (HelpText has a unique constraint on externalId property) closed by Nicklas Nordborg
fixed: (In [2212]) Fixes #210: HelpText? has a unique constraint on externalId …
8:22 AM Changeset [2212] by Nicklas Nordborg
Fixes #210: HelpText? has a unique constraint on externalId property

May 3, 2006:

5:04 PM Ticket #37 (New/Edit user - Handling of duplicate login) closed by Martin Svensson
fixed
5:02 PM Changeset [2211] by Martin Svensson
Fixes #37 New/Edit? user - Handling of duplicate login
3:42 PM Changeset [2210] by Nicklas Nordborg
Fixes #163: The tree of bioassay sets in the analysis should include …
3:42 PM Ticket #163 (The tree of bioassay sets in the analysis should include ...) closed by Nicklas Nordborg
fixed: (In [2210]) Fixes #163: The tree of bioassay sets in the analysis …
3:38 PM Ticket #211 (Show list of child bioassay sets/transformations when viewing a ...) created by Nicklas Nordborg
11:40 AM Ticket #3 (Update doesn't create indexes) closed by Nicklas Nordborg
fixed: (In [2209]) Fixes #3: Update doesn't create indexes
11:40 AM Changeset [2209] by Nicklas Nordborg
Fixes #3: Update doesn't create indexes
9:26 AM Ticket #210 (HelpText has a unique constraint on externalId property) created by Nicklas Nordborg
The externalId should only be unique within the client application …

May 2, 2006:

3:45 PM Changeset [2208] by dominic

Apr 28, 2006:

4:04 PM Changeset [2207] by Nicklas Nordborg
Started to add some database utility methods with the final goal to be …
3:49 PM Ticket #142 (Changing Preference to S or XS prevents from Seeing Annotations ...) closed by Martin Svensson
fixed: (In [2206]) Fixes #142. Changing Preference to S or XS prevents from …
3:49 PM Changeset [2206] by Martin Svensson
Fixes #142. Changing Preference to S or XS prevents from Seeing …
1:59 PM Changeset [2205] by Johan Enell
Base1PluginExecuter kan run executables and upload the files created …
1:55 PM Ticket #162 (Install help texts in flexisble way) closed by Martin Svensson
fixed: (In [2204]) Fixes #162. Install help texts in flexible way. Also a …
1:55 PM Changeset [2204] by Martin Svensson
Fixes #162. Install help texts in flexible way. Also a couple of …
11:31 AM Ticket #209 (Add JepMapper to FlatFileParser) created by Nicklas Nordborg
The JepMapper? would take a JEP expression and use to calculate data …
11:20 AM Ticket #1 (column names in flatfile parser) closed by Nicklas Nordborg
fixed: (In [2203]) Fixes #1: column names in flatfile parser Also changed …
11:20 AM Changeset [2203] by Nicklas Nordborg
Fixes #1: column names in flatfile parser Also changed migration so it …
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