Timeline



Apr 21, 2006:

4:25 PM Changeset [2179] by Martin Svensson
Fixes #178 Create plugin for importing help texts
4:25 PM Ticket #178 (Create plugin for importing help texts) closed by Martin Svensson
fixed: (In [2179]) Fixes #178 Create plugin for importing help texts
3:04 PM Changeset [2178] by Nicklas Nordborg
Fixed margin width of footnote page
3:02 PM Changeset [2177] by Nicklas Nordborg
Bad links and popup window size
2:42 PM Changeset [2176] by Nicklas Nordborg
Fixes first part of ticket #156: Creating a new file with the same …
2:25 PM Changeset [2175] by Nicklas Nordborg
Fixed some IE related display anomalies Added some more icons
1:28 PM Ticket #60 (BioAssay data export) closed by Nicklas Nordborg
fixed: (In [2174]) Fixes #60: BioAssay? data export
1:27 PM Changeset [2174] by Nicklas Nordborg
Fixes #60: BioAssay? data export
9:34 AM Changeset [2173] by Nicklas Nordborg
Fixed some vertical alignment problems of the new icons. Added icons …

Apr 20, 2006:

4:59 PM Changeset [2172] by Martin Svensson
Added option to create a new HelpItem? if the database doesn't contain …
4:08 PM Ticket #43 (New icons in web interface) closed by Nicklas Nordborg
fixed: (In [2171]) Fixes #43: New icons in web interface
4:08 PM Changeset [2171] by Nicklas Nordborg
Fixes #43: New icons in web interface
2:25 PM Changeset [2170] by Martin Svensson
Added a method to validate a XML-inputstream
10:45 AM Ticket #195 (Link the "Item is shared" icon in the list view to the Share item popup) created by Nicklas Nordborg
In the current implementation you must first check the item and then …
8:48 AM Ticket #148 (Should read permission in BASE 1 be migrated as read/use permission in ...) closed by Nicklas Nordborg
fixed: (In [2169]) Fixes #148: Should read permission in BASE 1 be migrated …
8:48 AM Changeset [2169] by Nicklas Nordborg
Fixes #148: Should read permission in BASE 1 be migrated as read/use …
8:33 AM Changeset [2168] by Nicklas Nordborg
Made ExampleImporter? an AutoDetectingImporter?

Apr 19, 2006:

4:06 PM Ticket #193 (Nullpointer exception when running an AutoDetectImporter plugin) closed by Nicklas Nordborg
fixed: (In [2167]) Fixes #193: Nullpointer exception when running an …
4:05 PM Changeset [2167] by Nicklas Nordborg
Fixes #193: Nullpointer exception when running an AutoDetectImporter? plugin
3:30 PM Tickets #96,​158 batch updated by Nicklas Nordborg
fixed: (In [2166]) Fixes #96 and #158: * Inherit annotations * Resizable …
3:30 PM Changeset [2166] by Nicklas Nordborg
Fixes #96 and #158: * Inherit annotations * Resizable annotation tab …
3:11 PM Ticket #194 (Permission denied: Not allowed to use B) created by Nicklas Nordborg
Happens when a user has been given WRITE permission to one item (A), …
11:00 AM Ticket #193 (Nullpointer exception when running an AutoDetectImporter plugin) created by Martin Svensson
Running an AutoDectectImporter? plugin that has no configuration …
9:34 AM Ticket #183 (cannot add annotation and new Items) closed by Jari Häkkinen
wontfix: This problem is due to mixing of classes from different subversion …
8:00 AM Ticket #192 (Analysis plugins that adds data to an experiment can't commit if the ...) created by Nicklas Nordborg
The problem is that we have to update the disk usage for the …

Apr 18, 2006:

2:00 PM Ticket #191 (Mobile number field in user info?) created by Jari Häkkinen
Should we add this? Maybe more columns such as skype contact, ICQ ... …
1:57 PM Ticket #190 (Beyond last page when filter is changed) created by Jari Häkkinen
If a filter is applied after browsing a couple of pages in a list (eg …
12:27 PM Changeset [2165] by Martin Svensson
Change the export format for helptexts
11:25 AM Ticket #171 (Experimental factor for experiments) closed by Nicklas Nordborg
fixed: (In [2164]) Fixes #171: Experimental factor for experiments
11:25 AM Changeset [2164] by Nicklas Nordborg
Fixes #171: Experimental factor for experiments
8:06 AM Changeset [2163] by Nicklas Nordborg
Webclient is installed by net.sf.basedb.install.WebClient?
8:02 AM Ticket #189 (Allow export plugins to send download immediately to client) created by Nicklas Nordborg
Maybe it is possible to add a Response.getOut() which provides an …

Apr 12, 2006:

5:35 PM Changeset [2162] by Johan Enell
It reads the configuration file but it doesnt store tha values

Apr 11, 2006:

4:52 PM Changeset [2161] by Johan Enell
createClient(...web...) was removed it is needed…

Apr 10, 2006:

8:25 AM Changeset [2160] by Martin Svensson
Added installation of HelpExporter? plugin

Apr 7, 2006:

5:25 PM Changeset [2159] by Martin Svensson
Fixes #179: Created plugin for exporting help texts
5:25 PM Ticket #179 (Create plugin for exporing help texts) closed by Martin Svensson
fixed: (In [2159]) Fixes #179: Created plugin for exporting help texts
3:58 PM Changeset [2158] by Nicklas Nordborg
Fixes #187: Add a New directory button to "Select directory" dialog
3:58 PM Ticket #187 (Add a New directory button to "Select directory" dialog) closed by Nicklas Nordborg
fixed: (In [2158]) Fixes #187: Add a New directory button to "Select …
3:45 PM Changeset [2157] by Nicklas Nordborg
Fixes #188: Readd the missing "Unload" button in Plugin definitions list
3:45 PM Ticket #188 (Readd the missing "Unload" button in Plugin definitions list) closed by Nicklas Nordborg
fixed: (In [2157]) Fixes #188: Readd the missing "Unload" button in Plugin …
3:04 PM Changeset [2156] by Nicklas Nordborg
Removed TODO from item that was done.
2:56 PM Ticket #139 (Write documentation: 5d) Analysis plug-ins) closed by Nicklas Nordborg
fixed: (In [2155]) Fixes #139: Write documentation: 5d) Analysis plug-ins …
2:56 PM Changeset [2155] by Nicklas Nordborg
Fixes #139: Write documentation: 5d) Analysis plug-ins Added another …
2:34 PM Ticket #188 (Readd the missing "Unload" button in Plugin definitions list) created by Nicklas Nordborg
The "Unload" button unloads the JAR file with an external plugin …
11:35 AM Ticket #137 (Write documentation 5b) Plug-ins for importing data) closed by Nicklas Nordborg
fixed: (In [2154]) Fixes #137: Write documentation 5b) Plug-ins for importing …
11:35 AM Changeset [2154] by Nicklas Nordborg
Fixes #137: Write documentation 5b) Plug-ins for importing data Added …
10:50 AM Changeset [2153] by Nicklas Nordborg
Classloader now ignores empty Class-Path attribute in the manifest file

Apr 6, 2006:

7:30 PM Ticket #187 (Add a New directory button to "Select directory" dialog) created by Nicklas Nordborg
This dialog is used in for example the "Move to" and "Save in" …
3:05 PM Changeset [2152] by Nicklas Nordborg
Fixed export function so it supports ReporterScore?
3:00 PM Changeset [2151] by Nicklas Nordborg
Added documentation 6a) How to write plug-ins
11:05 AM Ticket #186 (The InteractivePlugin.isInContext should return a String instead of boolean) created by Nicklas Nordborg
If so, the plugin could return null as a replacement for TRUE and a …
7:51 AM Ticket #126 (Add interface for managing reporter lists) closed by Nicklas Nordborg
fixed

Apr 5, 2006:

4:08 PM Ticket #185 (Refactor the Item class and DbControl and more...) created by Nicklas Nordborg
After adding the ReporterScore? which doesn't inherit from BasicItem?
3:37 PM Changeset [2150] by Nicklas Nordborg
Added page for viewing scores for reporters in reporter list. Added …

Apr 4, 2006:

3:50 PM Changeset [2149] by Nicklas Nordborg
First version of reporter list view Updated ReporterFlatFileImporter?
11:24 AM Changeset [2148] by Nicklas Nordborg
Changed copyright notice
11:21 AM Changeset [2147] by Nicklas Nordborg
Added PathParameterType? to allow plugins to ask for a File or …

Apr 3, 2006:

4:20 PM Changeset [2146] by Jari Häkkinen
Added devevloper information regarding database schema changes.
3:54 PM Changeset [2145] by Jari Häkkinen
Added a column in the download section indicating schema change.
3:32 PM Changeset [2144] by Jari Häkkinen
Added a comment about postgresql update problems.
3:27 PM Changeset [2143] by Jari Häkkinen
Added new revision to download 2.0RC1.2142
1:14 PM Ticket #184 (Running SQL/HQL after an update to the database) closed by Nicklas Nordborg
fixed: (In [2142]) Fixes #184: Running SQL/HQL after an update to the database.
1:14 PM Changeset [2142] by Nicklas Nordborg
Fixes #184: Running SQL/HQL after an update to the database.
8:07 AM Ticket #184 (Running SQL/HQL after an update to the database) created by Nicklas Nordborg
When updating the database there must be some way to update the values …
4:55 AM Ticket #183 (cannot add annotation and new Items) created by lyu@…
Dear all, After I downloaded the latest source code “2106 Mar 23, …

Mar 31, 2006:

11:30 PM Changeset [2141] by Jari Häkkinen
Added downloads for all demo server versions including original RC1.
8:16 PM Ticket #182 (Allow plugin parameters to use enumerations where one value is ...) created by Nicklas Nordborg
Ie. when the options are presented in a list the values displayed can …
4:13 PM Changeset [2140] by Johan Enell
config mathod created for Base1PluginExecuter
2:56 PM Ticket #176 (Running jobs with a project activated) closed by Nicklas Nordborg
fixed: (In [2139]) Fixes #176: Running jobs with a project activated INCLUDES …
2:56 PM Changeset [2139] by Nicklas Nordborg
Fixes #176: Running jobs with a project activated INCLUDES DATABASE …
2:15 PM Ticket #180 (Clear filter) closed by Nicklas Nordborg
fixed: (In [2138]) Fixes #180: Clear filter
2:15 PM Changeset [2138] by Nicklas Nordborg
Fixes #180: Clear filter
1:49 PM Ticket #124 (Plot function for analysed data) closed by Nicklas Nordborg
fixed: (In [2137]) Fixes #124: Plot function for analysed data
1:49 PM Changeset [2137] by Nicklas Nordborg
Fixes #124: Plot function for analysed data
12:07 PM Changeset [2136] by Johan Enell
added some javadoc
11:35 AM Changeset [2135] by Jari Häkkinen
Updated authors.
11:24 AM Changeset [2134] by Jari Häkkinen
Removing rf1 branch (moved to proteios).

Mar 30, 2006:

4:17 PM Ticket #181 (Import a plug-in configuration file from BASE 1) created by Johan Enell
An importer that reads a plug-in configuration from BASE 1 and creates …
3:55 PM Ticket #147 (Make normalization pinbased) closed by Johan Enell
fixed
3:49 PM Changeset [2133] by Johan Enell
corrected the counter
1:26 PM Changeset [2132] by Johan Enell
Lowess is pinbased
12:12 PM Changeset [2131] by Nicklas Nordborg
Replaced special JFreePlotServlet with the generic PlotServlet? which …
11:44 AM Changeset [2130] by Nicklas Nordborg
New bioassays now get the same name as their parent bioassay or raw …
11:31 AM Ticket #180 (Clear filter) created by Johan Enell
The funktion "clear filter" in the tables view should clear all …
11:09 AM Ticket #179 (Create plugin for exporing help texts) created by Nicklas Nordborg
This is needed so we don't have to edit the help texts directly in an …
11:08 AM Ticket #178 (Create plugin for importing help texts) created by Nicklas Nordborg
This could be used by the installation program to install help text. …
9:50 AM Ticket #161 (Add support for showing help texts in the GUI) closed by Martin Svensson
fixed: (In [2129]) Fixes #161 Add support for showing help texts in the GUI
9:50 AM Changeset [2129] by Martin Svensson
Fixes #161 Add support for showing help texts in the GUI
8:29 AM Ticket #177 (Store title and description of plugin parameters, not just the name) created by Nicklas Nordborg
When viewing the list of parameters sent to a job, the list only …
8:23 AM Ticket #176 (Running jobs with a project activated) created by Nicklas Nordborg
If a project is active when a job is created, the job must be executed …
8:01 AM Changeset [2128] by Gregory Vincic
Merged base/trunk revision 2116:2127 with base/branches/rf1
7:51 AM Changeset [2127] by olle
One new class diagram net_sf_basedb_core_plugin_02 with methods added …

Mar 29, 2006:

3:01 PM Ticket #29 (Filtering News on dates) closed by Nicklas Nordborg
duplicate: Is part of ticket #146: Write help text within the GUI.
2:56 PM Tickets #166,​167 batch updated by Nicklas Nordborg
fixed: (In [2126]) Fixes #166 and #167: * Make IntensityCalculator? an …
2:56 PM Changeset [2126] by Nicklas Nordborg
Fixes #166 and #167: * Make IntensityCalculator? an InteractivePlugin?
1:42 PM Ticket #145 (Plugin parameters with no default value get the string "null" as their ...) closed by Nicklas Nordborg
fixed: (In [2125]) Fixes #145: Plugin parameters with no default value get …
1:42 PM Changeset [2125] by Nicklas Nordborg
Fixes #145: Plugin parameters with no default value get the string …
11:19 AM Changeset [2124] by Jari Häkkinen
Creating branch for Dominics Annotation grouping stuff.
11:18 AM Changeset [2123] by olle
Umbrello class diagram showing inheritance between interfaces/classes …
11:18 AM Ticket #175 (Move core plugins to a standalone compilation unit) created by Nicklas Nordborg
It is a PITA to have to compile the entire core when working on the …
11:10 AM Ticket #174 (Batch creation of array slides) created by Nicklas Nordborg
It should be possible to create an ArrayBatch? and a bunch of …
11:09 AM Ticket #173 (Attach Hardware/Software to more items) created by Nicklas Nordborg
A request for beeing able to link a Hybridization to a hybridization …
11:06 AM Ticket #172 (Add externalId property to annotation type) created by Nicklas Nordborg
Tools for importing annotation types from other sources (ie. …
11:04 AM Ticket #171 (Experimental factor for experiments) created by Nicklas Nordborg
Experimental factors can be implemented as a link from Experiment to …
11:02 AM Ticket #170 (Categorize annotation types) created by Nicklas Nordborg
When having lots of annotation types for an item (say 50+) the …
8:41 AM Changeset [2122] by Nicklas Nordborg
Fixed some tooltip texts
8:37 AM Changeset [2121] by Nicklas Nordborg
Added gui for administrering help texts

Mar 28, 2006:

5:28 PM Changeset [2120] by Johan Enell
Median ratio is now pinbased
3:50 PM Changeset [2119] by Nicklas Nordborg
Added simple validation of formulas using JavaScript?.
3:47 PM Changeset [2118] by Nicklas Nordborg
Added some useful information (base version, browser, database …
1:50 PM Changeset [2117] by Gregory Vincic
Merged trunk revision 2093:2116 with branch rf1

Mar 27, 2006:

3:57 PM Changeset [2116] by Nicklas Nordborg
Plotting histogram is now working.
11:53 AM Changeset [2115] by Nicklas Nordborg
Selecting a different directory now updates the path in the "Save as" …
11:27 AM Ticket #169 (Use formulas for creating extra values) created by Nicklas Nordborg
The new Formula item is a very powerful way to calculate extra values …
11:26 AM Ticket #168 (Use formulas in table listings of bioassay data) created by Nicklas Nordborg
The new Formula item could prove very useful if used in table …
11:22 AM Ticket #165 (Running updatedb.sh changes server settings.) closed by Nicklas Nordborg
fixed: (In [2114]) Fixes #165: Running updatedb.sh changes server settings
11:22 AM Changeset [2114] by Nicklas Nordborg
Fixes #165: Running updatedb.sh changes server settings
11:17 AM Changeset [2113] by Nicklas Nordborg
Updated plot tool. It should now be possible to create scatter plots …
8:01 AM Ticket #167 (Create root bioassayset using other plugins than IntensityCalculator) created by Nicklas Nordborg
The current implementation has the IntensityCalculator? hardcoded in …
7:59 AM Ticket #166 (Make IntensityCalculator an InteractivePlugin) created by Nicklas Nordborg
and change it to use formulas from the database instead of from the …

Mar 24, 2006:

5:26 PM Changeset [2112] by olle
Class and interface components in MagicDraw? files coreclasses.uml.xml …
3:58 PM Changeset [2111] by Nicklas Nordborg
Updated plot function
3:31 PM Changeset [2110] by Jari Häkkinen
Forgot information about database upgrade.
3:23 PM Changeset [2109] by Jari Häkkinen
Improved docs, and added information on how to upgrade existing BASE 2.
2:29 PM Changeset [2108] by Martin Svensson
Added taglib file for base-help
2:09 PM WikiStart edited by Jari Häkkinen
(diff)
11:45 AM Ticket #165 (Running updatedb.sh changes server settings.) created by Jari Häkkinen
Running the update database script reverts the information 'About', …
11:17 AM Changeset [2107] by Nicklas Nordborg
Added interface for administration of formulas.
Note: See TracTimeline for information about the timeline view.