Timeline
Apr 12, 2006:
- 5:35 PM Changeset [2162] by
- It reads the configuration file but it doesnt store tha values
Apr 11, 2006:
- 4:52 PM Changeset [2161] by
- createClient(...web...) was removed it is needed…
Apr 10, 2006:
- 8:38 AM Ticket #178 (Create plugin for importing help texts) updated by
-
Status changed
- 8:25 AM Changeset [2160] by
- Added installation of HelpExporter plugin
Apr 7, 2006:
- 5:25 PM Changeset [2159] by
- Fixes #179: Created plugin for exporting help texts
- 5:25 PM Ticket #179 (Create plugin for exporing help texts) closed by
- fixed: (In [2159]) Fixes #179: Created plugin for exporting help texts
- 3:58 PM Changeset [2158] by
- Fixes #187: Add a New directory button to "Select directory" dialog
- 3:58 PM Ticket #187 (Add a New directory button to "Select directory" dialog) closed by
- fixed: (In [2158]) Fixes #187: Add a New directory button to "Select …
- 3:45 PM Changeset [2157] by
- Fixes #188: Readd the missing "Unload" button in Plugin definitions list
- 3:45 PM Ticket #188 (Readd the missing "Unload" button in Plugin definitions list) closed by
- fixed: (In [2157]) Fixes #188: Readd the missing "Unload" button in Plugin …
- 3:04 PM Changeset [2156] by
- Removed TODO from item that was done.
- 2:56 PM Ticket #139 (Write documentation: 5d) Analysis plug-ins) closed by
- fixed: (In [2155]) Fixes #139: Write documentation: 5d) Analysis plug-ins …
- 2:56 PM Changeset [2155] by
- Fixes #139: Write documentation: 5d) Analysis plug-ins Added another …
- 2:34 PM Ticket #188 (Readd the missing "Unload" button in Plugin definitions list) created by
- The "Unload" button unloads the JAR file with an external plugin …
- 11:35 AM Ticket #137 (Write documentation 5b) Plug-ins for importing data) closed by
- fixed: (In [2154]) Fixes #137: Write documentation 5b) Plug-ins for importing …
- 11:35 AM Changeset [2154] by
- Fixes #137: Write documentation 5b) Plug-ins for importing data Added …
- 10:50 AM Changeset [2153] by
- Classloader now ignores empty Class-Path attribute in the manifest file
Apr 6, 2006:
- 7:30 PM Ticket #187 (Add a New directory button to "Select directory" dialog) created by
- This dialog is used in for example the "Move to" and "Save in" …
- 3:05 PM Changeset [2152] by
- Fixed export function so it supports ReporterScore
- 3:00 PM Changeset [2151] by
- Added documentation 6a) How to write plug-ins
- 11:06 AM Ticket #152 (Error text on rawdata importer plugin) updated by
-
Description, Milestone changed
- 11:05 AM Ticket #186 (The InteractivePlugin.isInContext should return a String instead of boolean) created by
- If so, the plugin could return null as a replacement for TRUE and a …
- 10:01 AM Ticket #148 (Should read permission in BASE 1 be migrated as read/use permission in ...) updated by
-
Owner, Component changed
- 7:52 AM Ticket #139 (Write documentation: 5d) Analysis plug-ins) updated by
-
Status changed
- 7:51 AM Ticket #137 (Write documentation 5b) Plug-ins for importing data) updated by
-
Status changed
- 7:51 AM Ticket #126 (Add interface for managing reporter lists) closed by
- fixed
Apr 5, 2006:
- 4:08 PM Ticket #185 (Refactor the Item class and DbControl and more...) updated by
-
Priority changed
- 4:08 PM Ticket #185 (Refactor the Item class and DbControl and more...) created by
- After adding the ReporterScore which doesn't inherit from BasicItem …
- 3:37 PM Changeset [2150] by
- Added page for viewing scores for reporters in reporter list. Added …
Apr 4, 2006:
- 3:50 PM Changeset [2149] by
- First version of reporter list view Updated ReporterFlatFileImporter …
- 11:24 AM Changeset [2148] by
- Changed copyright notice
- 11:21 AM Changeset [2147] by
- Added PathParameterType to allow plugins to ask for a File or …
Apr 3, 2006:
- 4:20 PM Changeset [2146] by
- Added devevloper information regarding database schema changes.
- 3:54 PM Changeset [2145] by
- Added a column in the download section indicating schema change.
- 3:32 PM Changeset [2144] by
- Added a comment about postgresql update problems.
- 3:27 PM Changeset [2143] by
- Added new revision to download 2.0RC1.2142
- 1:14 PM Ticket #184 (Running SQL/HQL after an update to the database) closed by
- fixed: (In [2142]) Fixes #184: Running SQL/HQL after an update to the database.
- 1:14 PM Changeset [2142] by
- Fixes #184: Running SQL/HQL after an update to the database.
- 8:09 AM Ticket #184 (Running SQL/HQL after an update to the database) updated by
-
Status changed
- 8:07 AM Ticket #184 (Running SQL/HQL after an update to the database) created by
- When updating the database there must be some way to update the values …
- 8:01 AM Ticket #183 (cannot add annotation and new Items) updated by
- Please supply the original exceptions. Not the one you got after …
- 4:55 AM Ticket #183 (cannot add annotation and new Items) created by
- Dear all, After I downloaded the latest source code “2106 Mar 23, …
Mar 31, 2006:
- 11:30 PM Changeset [2141] by
- Added downloads for all demo server versions including original RC1.
- 8:16 PM Ticket #182 (Allow plugin parameters to use enumerations where one value is ...) created by
- Ie. when the options are presented in a list the values displayed can …
- 4:13 PM Changeset [2140] by
- config mathod created for Base1PluginExecuter
- 2:56 PM Ticket #176 (Running jobs with a project activated) closed by
- fixed: (In [2139]) Fixes #176: Running jobs with a project activated INCLUDES …
- 2:56 PM Changeset [2139] by
- Fixes #176: Running jobs with a project activated INCLUDES DATABASE …
- 2:23 PM Ticket #126 (Add interface for managing reporter lists) updated by
-
Status changed
- 2:23 PM Ticket #176 (Running jobs with a project activated) updated by
-
Status changed
- 2:15 PM Ticket #180 (Clear filter) closed by
- fixed: (In [2138]) Fixes #180: Clear filter
- 2:15 PM Changeset [2138] by
- Fixes #180: Clear filter
- 1:49 PM Ticket #124 (Plot function for analysed data) closed by
- fixed: (In [2137]) Fixes #124: Plot function for analysed data
- 1:49 PM Changeset [2137] by
- Fixes #124: Plot function for analysed data
- 1:24 PM Ticket #150 (Affymetrix support) updated by
-
Status changed
- 12:07 PM Changeset [2136] by
- added some javadoc
- 11:35 AM Changeset [2135] by
- Updated authors.
- 11:24 AM Changeset [2134] by
- Removing rf1 branch (moved to proteios).
- 7:53 AM Ticket #20 (Display and link to associated item from view page) updated by
-
Milestone changed
- 7:52 AM Ticket #157 (Display and link to associated items from list page) updated by
-
Milestone changed
Mar 30, 2006:
- 4:18 PM Ticket #181 (Import a plug-in configuration file from BASE 1) updated by
-
Status changed
- 4:17 PM Ticket #181 (Import a plug-in configuration file from BASE 1) created by
- An importer that reads a plug-in configuration from BASE 1 and creates …
- 4:03 PM Ticket #160 (List pages should be able to list subset of items) updated by
-
Owner changed
- 3:57 PM Ticket #157 (Display and link to associated items from list page) updated by
-
Milestone, Owner changed
- 3:55 PM Ticket #147 (Make normalization pinbased) closed by
- fixed
- 3:55 PM Ticket #147 (Make normalization pinbased) updated by
-
Status changed
- 3:52 PM Ticket #147 (Make normalization pinbased) updated by
-
Status, Component changed
- 3:49 PM Changeset [2133] by
- corrected the counter
- 1:26 PM Changeset [2132] by
- Lowess is pinbased
- 12:12 PM Changeset [2131] by
- Replaced special JFreePlotServlet with the generic PlotServlet which …
- 11:44 AM Changeset [2130] by
- New bioassays now get the same name as their parent bioassay or raw …
- 11:31 AM Ticket #180 (Clear filter) created by
- The funktion "clear filter" in the tables view should clear all …
- 11:09 AM Ticket #179 (Create plugin for exporing help texts) created by
- This is needed so we don't have to edit the help texts directly in an …
- 11:08 AM Ticket #178 (Create plugin for importing help texts) created by
- This could be used by the installation program to install help text. …
- 9:54 AM Ticket #162 (Install help texts in flexisble way) updated by
-
Status changed
- 9:50 AM Ticket #161 (Add support for showing help texts in the GUI) closed by
- fixed: (In [2129]) Fixes #161 Add support for showing help texts in the GUI
- 9:50 AM Changeset [2129] by
- Fixes #161 Add support for showing help texts in the GUI
- 8:29 AM Ticket #177 (Store title and description of plugin parameters, not just the name) created by
- When viewing the list of parameters sent to a job, the list only …
- 8:23 AM Ticket #176 (Running jobs with a project activated) created by
- If a project is active when a job is created, the job must be executed …
- 8:01 AM Changeset [2128] by
- Merged base/trunk revision 2116:2127 with base/branches/rf1
- 7:51 AM Changeset [2127] by
- One new class diagram net_sf_basedb_core_plugin_02 with methods added …
Mar 29, 2006:
- 3:01 PM Ticket #29 (Filtering News on dates) closed by
- duplicate: Is part of ticket #146: Write help text within the GUI.
- 2:56 PM Tickets #166,167 batch updated by
- fixed: (In [2126]) Fixes #166 and #167: * Make IntensityCalculator an …
- 2:56 PM Changeset [2126] by
- Fixes #166 and #167: * Make IntensityCalculator an InteractivePlugin …
- 1:42 PM Ticket #145 (Plugin parameters with no default value get the string "null" as their ...) closed by
- fixed: (In [2125]) Fixes #145: Plugin parameters with no default value get …
- 1:42 PM Changeset [2125] by
- Fixes #145: Plugin parameters with no default value get the string …
- 11:19 AM Changeset [2124] by
- Creating branch for Dominics Annotation grouping stuff.
- 11:18 AM Changeset [2123] by
- Umbrello class diagram showing inheritance between interfaces/classes …
- 11:18 AM Ticket #175 (Move core plugins to a standalone compilation unit) created by
- It is a PITA to have to compile the entire core when working on the …
- 11:16 AM Ticket #167 (Create root bioassayset using other plugins than IntensityCalculator) updated by
-
Status changed
- 11:15 AM Ticket #166 (Make IntensityCalculator an InteractivePlugin) updated by
-
Status changed
- 11:10 AM Ticket #174 (Batch creation of array slides) created by
- It should be possible to create an ArrayBatch and a bunch of …
- 11:09 AM Ticket #173 (Attach Hardware/Software to more items) created by
- A request for beeing able to link a Hybridization to a hybridization …
- 11:06 AM Ticket #172 (Add externalId property to annotation type) created by
- Tools for importing annotation types from other sources (ie. …
- 11:04 AM Ticket #171 (Experimental factor for experiments) created by
- Experimental factors can be implemented as a link from Experiment to …
- 11:02 AM Ticket #170 (Categorize annotation types) created by
- When having lots of annotation types for an item (say 50+) the …
- 8:41 AM Changeset [2122] by
- Fixed some tooltip texts
- 8:37 AM Changeset [2121] by
- Added gui for administrering help texts
Mar 28, 2006:
- 5:28 PM Changeset [2120] by
- Median ratio is now pinbased
- 3:50 PM Changeset [2119] by
- Added simple validation of formulas using JavaScript.
- 3:47 PM Changeset [2118] by
- Added some useful information (base version, browser, database …
- 1:50 PM Changeset [2117] by
- Merged trunk revision 2093:2116 with branch rf1
Mar 27, 2006:
- 3:57 PM Changeset [2116] by
- Plotting histogram is now working.
- 11:53 AM Changeset [2115] by
- Selecting a different directory now updates the path in the "Save as" …
- 11:27 AM Ticket #169 (Use formulas for creating extra values) created by
- The new Formula item is a very powerful way to calculate extra values …
- 11:26 AM Ticket #168 (Use formulas in table listings of bioassay data) created by
- The new Formula item could prove very useful if used in table …
- 11:22 AM Ticket #165 (Running updatedb.sh changes server settings.) closed by
- fixed: (In [2114]) Fixes #165: Running updatedb.sh changes server settings
- 11:22 AM Changeset [2114] by
- Fixes #165: Running updatedb.sh changes server settings
- 11:17 AM Changeset [2113] by
- Updated plot tool. It should now be possible to create scatter plots …
- 8:04 AM Ticket #161 (Add support for showing help texts in the GUI) updated by
-
Status changed
- 8:01 AM Ticket #167 (Create root bioassayset using other plugins than IntensityCalculator) created by
- The current implementation has the IntensityCalculator hardcoded in …
- 7:59 AM Ticket #166 (Make IntensityCalculator an InteractivePlugin) created by
- and change it to use formulas from the database instead of from the …
Mar 24, 2006:
- 5:26 PM Changeset [2112] by
- Class and interface components in MagicDraw files coreclasses.uml.xml …
- 3:58 PM Changeset [2111] by
- Updated plot function
- 3:31 PM Changeset [2110] by
- Forgot information about database upgrade.
- 3:23 PM Changeset [2109] by
- Improved docs, and added information on how to upgrade existing BASE 2.
- 2:29 PM Changeset [2108] by
- Added taglib file for base-help
- 2:09 PM WikiStart edited by
- (diff)
- 11:47 AM Ticket #165 (Running updatedb.sh changes server settings.) updated by
-
Description changed
- 11:45 AM Ticket #165 (Running updatedb.sh changes server settings.) created by
- Running the update database script reverts the information 'About', …
- 11:17 AM Changeset [2107] by
- Added interface for administration of formulas.
Mar 23, 2006:
- 4:08 PM Changeset [2106] by
- Formulas should use the getTitle() not getName() from formulas defined …
- 2:35 PM Ticket #155 (Export of annotations does not work) closed by
- fixed
- 2:34 PM Changeset [2105] by
- Fixes ticket #155: Export of annotations does not work
- 2:19 PM Ticket #164 (View all items in a project) created by
- Create a new page that lists all items shared to a project.
- 2:07 PM Changeset [2104] by
- Added Formula, test code and updated UML diagram.
- 8:01 AM Ticket #163 (The tree of bioassay sets in the analysis should include ...) created by
- A transformation may not create any child bioassayset and those …
Mar 22, 2006:
- 4:03 PM Ticket #141 (When creating a new user the default quota is not preselected) closed by
- fixed: (In [2103]) Fixes #141. When creating a new user the default quota is …
- 4:03 PM Changeset [2103] by
- Fixes #141. When creating a new user the default quota is not preselected
- 3:54 PM Ticket #146 (Add help text to the web gui) updated by
-
Description changed
- 3:53 PM Ticket #161 (Add support for showing help texts in the GUI) updated by
-
Description changed
- 3:53 PM Ticket #162 (Install help texts in flexisble way) created by
- Currently there is no other way to install help texts than to …
- 3:51 PM Ticket #161 (Add support for showing help texts in the GUI) created by
- The core has support for storing help texts related to client …
- 3:48 PM Ticket #146 (Add help text to the web gui) updated by
-
Owner changed
- 2:58 PM Ticket #157 (Display and link to associated items from list page) updated by
-
Milestone changed
- 2:57 PM Ticket #158 (resizable annotation tab for most items but mostly needed for ...) updated by
-
Milestone changed
- 2:33 PM Ticket #154 (Filter is cleared) closed by
- fixed: (In [2102]) Added new list page for bioassay data. Removed all old …
- 2:33 PM Changeset [2102] by
- Added new list page for bioassay data. Removed all old pages from …
- 11:49 AM Ticket #118 (Not allowed to change password) closed by
- fixed: (In [2101]) Fixes #118.Not allowed to change password
- 11:49 AM Changeset [2101] by
- Fixes #118.Not allowed to change password
- 9:29 AM Changeset [2100] by
- Fixes #159.The Admin/Procotol menu item is disabled even if the user …
- 9:29 AM Ticket #159 (The Admin/Procotol menu item is disabled even if the user has ...) closed by
- fixed: (In [2100]) Fixes #159.The Admin/Procotol menu item is disabled even …
- 8:35 AM Ticket #159 (The Admin/Procotol menu item is disabled even if the user has ...) updated by
-
Status changed
- 8:22 AM Ticket #160 (List pages should be able to list subset of items) created by
- For example, the page that lists users should be able to list users …
- 8:15 AM Ticket #159 (The Admin/Procotol menu item is disabled even if the user has ...) created by
- About the permission. The original power user role does not have the …
Mar 21, 2006:
- 11:21 PM Ticket #158 (resizable annotation tab for most items but mostly needed for ...) created by
- Using Long Names for AnnotationType declaration results in limited …
- 11:14 PM Ticket #157 (Display and link to associated items from list page) created by
- For Samples, Extracts, LabeledExtracts, Hybridization, Scan and Raw …
- 4:04 PM Changeset [2099] by
- Added list page for bioassays
- 4:03 PM Changeset [2098] by
- Fixes #119. Can't annotate sample in base 2 demo server
- 4:03 PM Ticket #119 (can't annotate sample in base 2 demo server) closed by
- fixed: (In [2098]) Fixes #119. Can't annotate sample in base 2 demo server
- 2:57 PM Changeset [2097] by
- New list and view page design for bioassay sets. Rearranged HTML plot …
- 9:02 AM Changeset [2096] by
- Added Tree utility class.
Mar 20, 2006:
- 10:50 AM Changeset [2095] by
- Help/temporary packages net.sf.basedb.core-part and …
- 10:46 AM Ticket #156 (Creating a new file with the same name as a previously deleted file ...) created by
- The summary says it all. I suggest that the deleted flag should be …
- 10:43 AM Ticket #155 (Export of annotations does not work) created by
- Exporting samples with annotations generates the below stack trace. …
- 9:53 AM Changeset [2094] by
- Merged trunk changes r2084:HEAD(2093) into branch
- 9:41 AM Changeset [2093] by
- MagicDraw file docexmples.uml.xml converted to Umbrello file …
- 9:23 AM Changeset [2092] by
- MagicDraw file dataclasses.uml.xml converted to Umbrello file …
Mar 18, 2006:
- 4:34 PM Ticket #128 (tomcat5.5 has to be reinstalled after upgrading BASE jars.) closed by
- worksforme: No, not anymore, something magic has taken place.
- 3:00 PM Changeset [2091] by
- Changed 'about' copyright statement.
Mar 17, 2006:
- 11:58 PM Changeset [2090] by
- New package download revision.
- 5:37 PM Changeset [2089] by
- Changed between to be low <= x AND x < high Database independent
- 3:06 PM Changeset [2088] by
- Packages net.sf.basedb.core, net.sf.basedb.core.authentication, …
- 11:30 AM Changeset [2087] by
- Added first version of HTML plot tool
- 11:23 AM Ticket #145 (Plugin parameters with no default value get the string "null" as their ...) updated by
- Instead of null it now writes the empty string. But now the action for …
- 11:20 AM Ticket #154 (Filter is cleared) created by
- The filter on the rawdata table is cleared everytime the page is updated.
- 9:50 AM Ticket #124 (Plot function for analysed data) updated by
-
Status changed
- 9:46 AM Changeset [2086] by
- Added Log2Function, ChannelFunction and JepExpressionFunction These …
Mar 16, 2006:
- 4:39 PM Changeset [2085] by
- MagicDraw file coreclasses.uml.xml converted to Umbrello file …
- 3:27 PM Changeset [2084] by
- Core refactoring, creating a distinction between core features and …
- 10:40 AM Changeset [2083] by
- Added Type.isNumerical() method
- 9:51 AM Changeset [2082] by
- Added max height and width for images and set antialias to false
- 8:05 AM Changeset [2081] by
- Added a more visible link to milestones.
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