Timeline
Mar 15, 2006:
- 2:13 PM Changeset [2080] by
- changed exception handling in method doImport
- 2:12 PM Ticket #151 (Space in filenames) closed by
- fixed: Must copy the web.xml to WEB-INF
- 1:29 PM Ticket #153 (More progress from importer plug-ins) created by
- Add line/s in the progress info. Maybe change to features or spot or …
- 1:16 PM Ticket #152 (Error text on rawdata importer plugin) created by
- When trying to import data on a none empty rawdata the errormessage …
- 11:13 AM Ticket #151 (Space in filenames) created by
- If you upload a file with spaces the file can't be found. When using …
- 11:02 AM Ticket #130 (Is the java compiler fix still needed for tomcat5.5) closed by
- fixed: (In [2079]) Fixes #130. The tomcat fix is not needed anymore, updated …
- 11:02 AM Changeset [2079] by
- Fixes #130. The tomcat fix is not needed anymore, updated documentation.
- 10:53 AM Changeset [2078] by
- Name of item types in view_role now agree with the names of item types …
- 10:53 AM Ticket #123 (The textformat of item types in Edit role ->Permissions doesn't agree ...) closed by
- fixed: (In [2078]) Name of item types in view_role now agree with the names …
- 8:18 AM Changeset [2077] by
- Help, FAQ and Report a bug links were linked to the wrong page if no …
Mar 14, 2006:
- 1:25 PM Changeset [2076] by
- Started to add some procedures to test permissions in BASE2
Mar 13, 2006:
- 4:15 PM Ticket #143 (Typo in raw data type name for Affymetrix) closed by
- fixed
- 4:15 PM Changeset [2075] by
- Resolved ticket:143
- 3:54 PM Ticket #150 (Affymetrix support) created by
- 3:53 PM Ticket #149 (Plugin bridge that allows BASE1 plug-ins to be run in BASE2) created by
- 3:41 PM Ticket #148 (Should read permission in BASE 1 be migrated as read/use permission in ...) created by
- Items shared to groups should be migrated as read/use, otherwise it is …
- 3:35 PM Ticket #2 (ability to add image files as annotation for samples) closed by
- wontfix: Replaced with ticket:107
- 3:22 PM Ticket #78 (pinbase median ratio normalization) closed by
- fixed: Replace with ticket:147
- 3:21 PM Ticket #147 (Make normalization pinbased) created by
- 3:17 PM Ticket #146 (Add help text to the web gui) created by
- This ticket is now part of tickets #268, #269, #270, #271 and #272.
- 3:11 PM Ticket #19 (Show/hide option for various section on a "view item" page) closed by
- wontfix
- 2:12 PM Ticket #145 (Plugin parameters with no default value get the string "null" as their ...) created by
- If no default value is set for a plugin parameter, the input field for …
- 2:01 PM Ticket #144 (Overhaul of BASE web site) created by
- BASE 2 should replace BASE 1 as the main event at BASE web site.
- 1:22 PM Ticket #143 (Typo in raw data type name for Affymetrix) created by
- a very minor thing to change in the …
- 1:08 PM Ticket #142 (Changing Preference to S or XS prevents from Seeing Annotations ...) created by
- Bug seen on demo-server + my own installation: when changing display …
- 12:53 PM Ticket #141 (When creating a new user the default quota is not preselected) created by
- The quota that happens to be sorted first in the list is the one that …
- 12:48 PM Ticket #140 (Write documentation: 5e) Secondary file storage) created by
- 12:47 PM Ticket #139 (Write documentation: 5d) Analysis plug-ins) created by
- 12:46 PM Ticket #138 (Write documentation: 5c) Authentication plug-ins) created by
- 12:46 PM Ticket #137 (Write documentation 5b) Plug-ins for importing data) created by
- 12:44 PM Ticket #136 (Write documentation: 3c) Internals of the core API - Job queue management) created by
- 12:44 PM Ticket #135 (Write documentation: 3c) Internals of the core API - Plugin system) created by
- 12:43 PM Ticket #134 (Write documentation: 3c) Internals of the core API - Checking quota) created by
- 12:43 PM Ticket #133 (Write documentation: 3c) Internals of the core API - Data validation) created by
- 12:42 PM Ticket #132 (Write documentation: 3c) Internals of the core API - Transaction handling) created by
- 12:14 PM Ticket #131 (Write documentation 4a) Schematic overview of BASE) created by
- 12:04 PM Ticket #130 (Is the java compiler fix still needed for tomcat5.5) created by
- Test a late release of tomcat5.5 to find out whether the recipe on …
- 12:03 PM Ticket #129 (Interface for inheriting annotations) closed by
- duplicate: Same as #96.
- 12:02 PM Ticket #129 (Interface for inheriting annotations) created by
- And add support for using the annotations in the analysis.
- 11:57 AM Ticket #128 (tomcat5.5 has to be reinstalled after upgrading BASE jars.) created by
- 11:57 AM Ticket #127 (Experiment explorer) created by
- Add interface similar to the Experiment explorer found in BASE 1.
- 11:55 AM Ticket #126 (Add interface for managing reporter lists) created by
- It should also be possible to use the reporter lists in the analysis.
- 11:53 AM Ticket #125 (Create filtered bioassay sets) created by
- Add functionality to create filtered bioassay sets.
- 11:51 AM Ticket #124 (Plot function for analysed data) created by
- Plot function similar to the BASE 1 plot function to plot analysed data.
- 9:13 AM Changeset [2074] by
- changed the imports
- 9:05 AM Changeset [2073] by
- write empty string instead of null
- 8:32 AM Ticket #122 (Creation of ArrayDesign: AffyChip check box does not work) closed by
- fixed
- 8:32 AM Changeset [2072] by
- Fixed bug #122: Creation of ArrayDesign?: AffyChip? check box does not work
Mar 10, 2006:
- 11:09 AM Ticket #123 (The textformat of item types in Edit role ->Permissions doesn't agree ...) created by
- The Item types under a role's permissions are written in singular …
Mar 9, 2006:
- 12:38 PM Ticket #122 (Creation of ArrayDesign: AffyChip check box does not work) created by
- Despite ticking the AffyChip? box, the design is created as non affy
Mar 6, 2006:
- 1:34 PM Changeset [2071] by
- Testprocedures for projectadmin and updated newcommands
- 1:29 PM Changeset [2070] by
- Updated the text and corrected misspellings
Mar 2, 2006:
- 10:18 AM Changeset [2069] by
- Updated information on downloadable RC1 version.
- 9:30 AM Changeset [2068] by
- Fixed handling of null parameter values. Null values are written as …
Mar 1, 2006:
- 5:28 PM Ticket #120 (create new experiment error) closed by
- duplicate: Known and fixes #117
- 5:25 PM Ticket #121 (create new raw bioassay error) closed by
- duplicate: Known and fixed #117
- 4:12 PM Ticket #121 (create new raw bioassay error) created by
- java.lang.NullPointerException? on page …
- 4:10 PM Ticket #120 (create new experiment error) created by
- java.lang.NullPointerException? on page …
Feb 28, 2006:
- 4:17 PM Changeset [2067] by
- Query needs to include shared plugins for users to use all available …
- 11:37 AM Changeset [2066] by
- Checked in information explaining that downloadable RC1 is not the …
- 9:48 AM Changeset [2065] by
- The method getRawDataType didnt return null for id = null
- 9:47 AM Ticket #117 (Failure to Create Raw BioAssay (tested on 2 different installs: linux ...) closed by
- fixed: The method RawDataTypes?.getRawDataType(String id) threw an exception …
Feb 27, 2006:
- 12:26 PM Ticket #119 (can't annotate sample in base 2 demo server) created by
- Hi Jari/others, When I'm using my guest509 username on the base2 demo …
- 11:34 AM Ticket #118 (Not allowed to change password) created by
- When trying to change my password i get the following error message: …
Feb 24, 2006:
- 2:35 PM Ticket #8 (PrintMapBlockFileImporter) closed by
- fixed
- 2:17 PM Ticket #117 (Failure to Create Raw BioAssay (tested on 2 different installs: linux ...) created by
- Dear BASE Attemping to create a Raw Bioassay objects results in the …
- 1:36 PM Ticket #116 (Analyze of experiment fails) closed by
- duplicate: Sorry, this is a known issue and there is a solution, see ticket:99
Feb 23, 2006:
- 10:42 PM Ticket #9 (Normalization: Lowess) closed by
- fixed: It is now a part of the BASE core plug-ins.
- 10:40 PM Milestone BASE 2.0 RC1 completed
- This release is aimed at being the first release that we will …
- 10:39 PM Ticket #116 (Analyze of experiment fails) created by
- The analyze experiment feature does not work. Trying to create a new …
- 10:13 PM Ticket #115 (DemoServer internal error on startup) closed by
- fixed: Tomcat 5 stopped working. Nothing helped, I even resorted to CPR but …
- 4:22 PM Ticket #115 (DemoServer internal error on startup) created by
- Got this when trying to start the base2 server: Server error! The …
- 4:05 PM Changeset [2064] by
- Fixed spelling error.
- 3:16 PM Changeset [2063] by
- Releasing RC1
- 3:10 PM Changeset [2062] by
- small bug in last query
- 2:52 PM Changeset [2061] by
- Made some corrections on Lowess
- 2:30 PM Changeset [2060] by
- Bumped to RC1.
- 2:20 PM Changeset [2059] by
- Information about people involved in BASE 2, presently and in the past.
- 2:13 PM Changeset [2058] by
- Make sure the correct web.xml (/src/web.xml.in) is copied by ant dist.
- 11:42 AM Changeset [2057] by
- Added CompileAll? servlet
- 8:45 AM Changeset [2056] by
- Correct some misspellings
- 12:28 AM Changeset [2055] by
- Added subversion properties to .html files.
- 12:22 AM Changeset [2054] by
- Added svn:ignore to exclude api direcotry.
Feb 22, 2006:
- 11:55 PM Changeset [2053] by
- Added subversion properties to .xml files.
- 11:48 PM Changeset [2052] by
- Added copyright and license notice.
- 4:20 PM Changeset [2051] by
- Adapted and updated documents to the new listpages
- 2:55 PM Changeset [2050] by
- Exclude Oracle JDBC driver from "ant dist"
- 2:33 PM Ticket #114 (Default values for plugin parameters are not shown.) closed by
- fixed
- 2:32 PM Changeset [2049] by
- Fixed ticket #114: Default values for plugin parameters are not shown.
- 2:19 PM Changeset [2048] by
- Directory.createHomeDirectory no longer shares the new directories to …
- 2:03 PM Changeset [2047] by
- Fixed rounding errors while parsing and formatting byte values.
- 1:30 PM Changeset [2046] by
- Fixed bug where projects keys didn't get loaded correctly due to a …
- 12:09 PM Changeset [2045] by
- Fixed problem where the InternalStorageController? sets the location of …
- 11:02 AM Changeset [2044] by
- Updated copyright notice.
- 10:58 AM Changeset [2043] by
- Added information on how to create a plug-in.
- 10:49 AM Ticket #113 (Re-upload a file should have a checkbox option to verify against old MD5) closed by
- fixed
- 10:49 AM Changeset [2042] by
- Fixed ticket #113: Re-upload a file should have a checkbox option to …
- 9:49 AM Ticket #112 (view/download of files with national characters doesn't work) closed by
- fixed: This link may be useful: http://java2.5341.com/msg/76475.html
- 9:48 AM Changeset [2041] by
- Fixed ticket #112: view/download of files with national characters …
- 8:49 AM Changeset [2040] by
- Now creates child bioassays. Moved batcher.close() and dc.commit() to …
- 8:43 AM Ticket #114 (Default values for plugin parameters are not shown.) created by
- The web client ignores default values for plugin parameters and just …
Feb 21, 2006:
- 4:21 PM Ticket #74 (HibernateUtil doesn't find configuration file if installation path ...) closed by
- fixed
- 4:20 PM Changeset [2039] by
- Fixed ticket #74: HibernateUtil? doesn't find configuration file if …
- 3:44 PM Changeset [2038] by
- Added SecondaryStorageController? and InternalStorageController?. More …
- 3:26 PM Changeset [2037] by
- added ignore to log4j.properties
- 2:56 PM Changeset [2036] by
- LowessNormalization? added
- 2:55 PM Ticket #113 (Re-upload a file should have a checkbox option to verify against old MD5) created by
- If the checkbox is checked the upload will be rejected if the MD5 of …
- 2:04 PM Ticket #112 (view/download of files with national characters doesn't work) created by
- For example a file named: två View link in browser: …
- 11:22 AM Ticket #70 (Lazy creation of PreparedStatments in BasicBatcher.) closed by
- wontfix: Well, we are probably better of creating the statements in the …
- 11:21 AM Changeset [2035] by
- Fixed ticket #70: Lazy creation of PreparedStatments? in BasicBatcher?. …
- 11:14 AM Ticket #71 (java.sql.Date is hardcoded in BasicBatcher) closed by
- fixed
- 11:13 AM Changeset [2034] by
- Fixed ticket #71: java.sql.Date is hardcoded in BasicBatcher?
- 8:36 AM Changeset [2033] by
- Removed unused import
- 8:25 AM Changeset [2032] by
- Fucking eclipse!
- 8:23 AM Changeset [2031] by
- Removed unused imports
Feb 20, 2006:
- 3:59 PM Changeset [2030] by
- Fixed ticket #91: Export fails if there are too many items (MySQL only)
- 3:59 PM Ticket #91 (Export fails if there are too many items (MySQL only)) closed by
- fixed
- 12:29 PM Changeset [2029] by
- Fixed ticket #101: Add try / catch around all Query.iterate methods in …
- 12:27 PM Ticket #101 (Add try / catch around all Query.iterate methods in list pages) closed by
- fixed
- 11:36 AM Ticket #69 (Funny looking line showing when last tab is visible) closed by
- worksforme
- 11:29 AM Ticket #80 (RawDataPropertyExpression.getColumn should cache column information) closed by
- fixed
- 11:26 AM Changeset [2028] by
- Fixed ticket #80: RawDataPropertyExpression?.getColumn should cache …
- 11:17 AM Changeset [2027] by
- Fixed column order in the configuration view
- 10:24 AM Changeset [2026] by
- Added some more intensity formulas to raw data types. Ticket #90: Add …
- 10:24 AM Ticket #90 (Add more raw data types with intensity formulas to default settings) closed by
- fixed
- 9:28 AM Changeset [2025] by
- Fixed ticket #68: Application.BUILD should be updated automatically.
- 9:27 AM Ticket #68 (Application.BUILD should be updated automatically.) closed by
- fixed: The "ant dist" command now uses the "svnversion" command to get the …
- 8:20 AM Ticket #111 (The User columns don't have the same order when all columns are shown) closed by
- worksforme
Feb 17, 2006:
- 4:59 PM Changeset [2024] by
- Updated testdocument for List columns,Filter and User admin
- 4:47 PM Ticket #75 (Remove unused code in migrate package) closed by
- fixed: Fixed
- 4:47 PM Changeset [2023] by
- Fixed ticket #75 removing warnings and unused code
- 3:51 PM Changeset [2022] by
- Fixed ticket #89: Check list of hardware / software that the …
- 3:51 PM Ticket #88 (Installation should add print robots) closed by
- fixed
- 3:50 PM Ticket #89 (Check list of hardware / software that the installation program is adding) closed by
- fixed
- 3:06 PM Changeset [2021] by
- Install can now update existing database and add missing items.
- 3:04 PM Ticket #111 (The User columns don't have the same order when all columns are shown) created by
- The columns in userlist don't get the same order when selecting All …
- 1:48 PM Changeset [2020] by
- Using original gif (instead for generated png) image for html.
- 1:25 PM Changeset [2019] by
- Added web dev status figure to the test document.
- 12:42 PM Changeset [2018] by
- Removed Filter. It has now been completely replaced by ItemContext?.
- 11:59 AM Changeset [2017] by
- Removed TableInfo? class since all list pages now use the ItemContext? …
- 9:57 AM Changeset [2016] by
- Changed system id:s to upper case
- 9:49 AM Changeset [2015] by
- Quota now use the new list and view page design
- 9:29 AM Ticket #110 (Potential threading problem in /www/analyze/index.jsp) closed by
- fixed: Fixed. Index is now generated with the javascript treeline.js
- 9:28 AM Changeset [2014] by
- Fixed ticket #110
- 9:17 AM Changeset [2013] by
- Made section numbers coherrent with the web interface dev status image.
- 8:53 AM Ticket #31 (Changing list columns - list of visible columns becomes empty) closed by
- fixed
- 8:45 AM Changeset [2012] by
- Mime types now use the new list and view page design
- 8:31 AM Changeset [2011] by
- Quota types now use the new list and view page design
- 8:24 AM Changeset [2010] by
- File types now use the new list and view page design
- 8:19 AM Ticket #110 (Potential threading problem in /www/analyze/index.jsp) created by
- The file /www/analyze/index.jsp has declared a: […] The index is …
Feb 16, 2006:
- 5:38 PM Changeset [2009] by
- Fixed ticket #31 'Changing list columns - list of visible columns …
- 3:59 PM Ticket #50 (New list and view page design for Hardware type and Software type) closed by
- fixed
- 3:55 PM Changeset [2008] by
- Fixed ticket #50: New list and view page design for Hardware type and …
- 2:37 PM Ticket #28 (Returning to mainpage from viewing all the news) closed by
- fixed
- 2:37 PM Changeset [2007] by
- Fixed ticket #28 'It could be useful to have a way to get back to …
- 2:26 PM Changeset [2006] by
- Added Main.trimString() javascript function
- 2:15 PM Ticket #52 (Auto refresh job view when job not done) closed by
- fixed
- 2:15 PM Changeset [2005] by
- Fixing ticket #52. "Job view should be automatically updated every X …
- 2:05 PM Changeset [2004] by
- Client application admin now use the new list and view page design
- 1:56 PM Ticket #77 (Well annotations) closed by
- fixed: Fixed
- 1:24 PM Changeset [2003] by
- Fixed ticket #105: Load a filter preset gives an unexpected error
- 1:24 PM Ticket #105 (Load a filter preset gives an unexpected error) closed by
- fixed
- 12:35 PM Ticket #106 (Export with no exported columns gives an unexpected error) closed by
- fixed
- 12:35 PM Changeset [2002] by
- Fixed ticket #109: Can't find file 'save_as.jsp' when trying to browse …
- 12:33 PM Ticket #109 (Can't find file 'save_as.jsp' when trying to browse in Export options) closed by
- fixed
- 12:14 PM Ticket #25 (Changing information on how to get an account does not propagete to ...) closed by
- fixed
- 12:14 PM Changeset [2001] by
- Fixed ticket #25: Changing information on how to get an account does …
- 11:47 AM Changeset [2000] by
- Fixed ticket #77 and started working on removing unused code (ticket …
- 11:23 AM Changeset [1999] by
- Fixed ticket #79: LabeledExtract?.getHybridizations need a restriction …
- 11:23 AM Ticket #79 (LabeledExtract.getHybridizations need a restriction) closed by
- fixed
- 10:55 AM Ticket #65 (New list and view page design for Reporter types) closed by
- fixed
- 10:55 AM Changeset [1998] by
- Fixed ticket #65: New list and view page design for Reporter types
- 10:32 AM Ticket #46 (New list and view page design for News) closed by
- fixed
- 10:31 AM Changeset [1997] by
- Fixed ticket #46: New list and view page design for News
- 9:18 AM Ticket #94 (Fix list of pooled samples/extracts/labeled extracts on view pages) closed by
- fixed
- 9:16 AM Changeset [1996] by
- Fixed ticket #94: Fix list of pooled samples/extracts/labeled extracts …
- 8:58 AM Ticket #54 (New list and view page design for plugins) closed by
- fixed
- 8:53 AM Ticket #109 (Can't find file 'save_as.jsp' when trying to browse in Export options) created by
- The client tries to open a file that doesn't exist in Export options …
- 8:40 AM Changeset [1995] by
- Plugin configurations now use the new list and view page design. This …
- 8:16 AM Ticket #108 (Logging the change history of an item) created by
- Implement a log function that logs whenever an item is modified. It …
- 8:12 AM Ticket #107 (Any-to-any relation) created by
- Add functionality that allows creating links between any two types of …
Feb 15, 2006:
- 4:51 PM Ticket #106 (Export with no exported columns gives an unexpected error) created by
- Trying to Export a list with no columns in exported columns throws an …
- 4:19 PM Ticket #105 (Load a filter preset gives an unexpected error) created by
- Trying to load a preset filter from the Manage window - throws an …
- 3:03 PM Changeset [1994] by
- Fixed ticket #104: Add users to a role gives an unexpected error.
- 3:03 PM Ticket #104 (Add users to a role gives an unexpected error.) closed by
- fixed
- 1:53 PM Changeset [1993] by
- Plugin admin is now using the new list and view page design
- 1:51 PM Ticket #104 (Add users to a role gives an unexpected error.) created by
- There is an exception when pressing the button Add users... in Edit …
- 9:48 AM Changeset [1992] by
- Added -server flag which should fix the following error Exception in …
- 9:44 AM Changeset [1991] by
- Plugin types now use the new list and view page design
- 9:07 AM Changeset [1990] by
- Added jsp.compile target to build.xml which compiles all JSP pages
Feb 14, 2006:
- 9:06 PM Changeset [1989] by
- Updated development status
- 6:43 PM Changeset [1988] by
- added test for creating a protocol
- 5:26 PM Ticket #103 (Display name of current item in 'Set access permissions' dialog) created by
- When setting access permissions for an item, the name of the item in …
- 3:55 PM Changeset [1987] by
- Fixed ticket #57: Plate mappings view page is not complete
- 3:55 PM Ticket #57 (Plate mappings view page is not complete) closed by
- fixed
- 3:31 PM Changeset [1986] by
- Fixed ticket #102: User->New... gives: java.lang.NullPointerException?
- 3:30 PM Ticket #102 (User->New... gives: java.lang.NullPointerException on page ...) closed by
- fixed
- 3:25 PM Ticket #53 (Annotate items page is bad) closed by
- fixed
- 3:25 PM Changeset [1985] by
- Fixed ticket #53: Annotate items page is bad
- 2:49 PM Changeset [1984] by
- spelling error
- 1:42 PM Ticket #102 (User->New... gives: java.lang.NullPointerException on page ...) created by
- Trying to create/add a new user or a new group gives a …
- 1:23 PM Changeset [1983] by
- Fixed compilation error
- 1:08 PM Changeset [1982] by
- Fixing migration bug where users where mapped incorrectly
- 1:02 PM Changeset [1981] by
- Raw data types are now sorted
- 12:19 PM Ticket #101 (Add try / catch around all Query.iterate methods in list pages) created by
- If there is an error in the query the page will only display a stack …
- 12:12 PM Ticket #49 (New list and view page design for Annotation types) closed by
- fixed
- 12:12 PM Changeset [1980] by
- Fixed ticket #49: New list and view page design for Annotation types
- 9:58 AM Ticket #100 (IllegalArgumentException occurred calling getter of ...) closed by
- fixed
- 9:57 AM Changeset [1979] by
- Fixed ticket #100: IllegalArgumentException? occurred calling getter of …
- 8:07 AM Changeset [1978] by
- ArrayDesignPlate? is child item to ArrayDesign?
Feb 13, 2006:
- 4:52 PM Ticket #44 (Clean up the User prefences dialog box) closed by
- fixed
- 4:51 PM Changeset [1977] by
- Fixed ticket #44: Clean up the User prefences dialog box
- 4:18 PM Ticket #100 (IllegalArgumentException occurred calling getter of ...) created by
- Happens on the View / Files page. Seems to be related to Hibernate …
- 4:15 PM Ticket #61 (Array design can't be connected to plate) closed by
- fixed
- 4:00 PM Changeset [1976] by
- Fixed ticket #61: Array design can't be connected to plate
- 1:58 PM Changeset [1975] by
- Better implementation of HibernateUtil?.isEmptyDatabase
- 12:07 PM Changeset [1974] by
- Updated to Hibernate 3.1.2 Moved all Hibernate options from …
- 12:01 PM Changeset [1973] by
- Fixed NPE when not logged in.
- 11:50 AM Ticket #99 (java.lang.NoSuchMethodError: getHibernateLazyInitializer) closed by
- wontfix
- 11:49 AM Ticket #99 (java.lang.NoSuchMethodError: getHibernateLazyInitializer) created by
- This bug appears when proxy objects are needed to be initialized from …
- 11:15 AM Changeset [1972] by
- Now closes the DbControl? in case of an exception
- 11:07 AM Changeset [1971] by
- Test procedures for listpages and added new commands
- 9:08 AM Changeset [1970] by
- Edit user updated to new design. Finished ticket #47: New list and …
- 9:08 AM Ticket #47 (New list and view page design for Users, Groups and Roles) closed by
- fixed
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