Timeline
Feb 21, 2006:
- 4:21 PM Ticket #74 (HibernateUtil doesn't find configuration file if installation path ...) closed by
- fixed
- 4:20 PM Changeset [2039] by
- Fixed ticket #74: HibernateUtil? doesn't find configuration file if …
- 3:44 PM Changeset [2038] by
- Added SecondaryStorageController? and InternalStorageController?. More …
- 3:26 PM Changeset [2037] by
- added ignore to log4j.properties
- 2:56 PM Changeset [2036] by
- LowessNormalization? added
- 2:55 PM Ticket #113 (Re-upload a file should have a checkbox option to verify against old MD5) created by
- If the checkbox is checked the upload will be rejected if the MD5 of …
- 2:04 PM Ticket #112 (view/download of files with national characters doesn't work) created by
- For example a file named: två View link in browser: …
- 11:22 AM Ticket #70 (Lazy creation of PreparedStatments in BasicBatcher.) closed by
- wontfix: Well, we are probably better of creating the statements in the …
- 11:21 AM Changeset [2035] by
- Fixed ticket #70: Lazy creation of PreparedStatments? in BasicBatcher?. …
- 11:14 AM Ticket #71 (java.sql.Date is hardcoded in BasicBatcher) closed by
- fixed
- 11:13 AM Changeset [2034] by
- Fixed ticket #71: java.sql.Date is hardcoded in BasicBatcher?
- 8:36 AM Changeset [2033] by
- Removed unused import
- 8:25 AM Changeset [2032] by
- Fucking eclipse!
- 8:23 AM Changeset [2031] by
- Removed unused imports
Feb 20, 2006:
- 3:59 PM Changeset [2030] by
- Fixed ticket #91: Export fails if there are too many items (MySQL only)
- 3:59 PM Ticket #91 (Export fails if there are too many items (MySQL only)) closed by
- fixed
- 12:29 PM Changeset [2029] by
- Fixed ticket #101: Add try / catch around all Query.iterate methods in …
- 12:27 PM Ticket #101 (Add try / catch around all Query.iterate methods in list pages) closed by
- fixed
- 11:36 AM Ticket #69 (Funny looking line showing when last tab is visible) closed by
- worksforme
- 11:29 AM Ticket #80 (RawDataPropertyExpression.getColumn should cache column information) closed by
- fixed
- 11:26 AM Changeset [2028] by
- Fixed ticket #80: RawDataPropertyExpression?.getColumn should cache …
- 11:17 AM Changeset [2027] by
- Fixed column order in the configuration view
- 10:24 AM Changeset [2026] by
- Added some more intensity formulas to raw data types. Ticket #90: Add …
- 10:24 AM Ticket #90 (Add more raw data types with intensity formulas to default settings) closed by
- fixed
- 9:28 AM Changeset [2025] by
- Fixed ticket #68: Application.BUILD should be updated automatically.
- 9:27 AM Ticket #68 (Application.BUILD should be updated automatically.) closed by
- fixed: The "ant dist" command now uses the "svnversion" command to get the …
- 8:20 AM Ticket #111 (The User columns don't have the same order when all columns are shown) closed by
- worksforme
Feb 17, 2006:
- 4:59 PM Changeset [2024] by
- Updated testdocument for List columns,Filter and User admin
- 4:47 PM Ticket #75 (Remove unused code in migrate package) closed by
- fixed: Fixed
- 4:47 PM Changeset [2023] by
- Fixed ticket #75 removing warnings and unused code
- 3:51 PM Changeset [2022] by
- Fixed ticket #89: Check list of hardware / software that the …
- 3:51 PM Ticket #88 (Installation should add print robots) closed by
- fixed
- 3:50 PM Ticket #89 (Check list of hardware / software that the installation program is adding) closed by
- fixed
- 3:06 PM Changeset [2021] by
- Install can now update existing database and add missing items.
- 3:04 PM Ticket #111 (The User columns don't have the same order when all columns are shown) created by
- The columns in userlist don't get the same order when selecting All …
- 1:48 PM Changeset [2020] by
- Using original gif (instead for generated png) image for html.
- 1:25 PM Changeset [2019] by
- Added web dev status figure to the test document.
- 12:42 PM Changeset [2018] by
- Removed Filter. It has now been completely replaced by ItemContext?.
- 11:59 AM Changeset [2017] by
- Removed TableInfo? class since all list pages now use the ItemContext? …
- 9:57 AM Changeset [2016] by
- Changed system id:s to upper case
- 9:49 AM Changeset [2015] by
- Quota now use the new list and view page design
- 9:29 AM Ticket #110 (Potential threading problem in /www/analyze/index.jsp) closed by
- fixed: Fixed. Index is now generated with the javascript treeline.js
- 9:28 AM Changeset [2014] by
- Fixed ticket #110
- 9:17 AM Changeset [2013] by
- Made section numbers coherrent with the web interface dev status image.
- 8:53 AM Ticket #31 (Changing list columns - list of visible columns becomes empty) closed by
- fixed
- 8:45 AM Changeset [2012] by
- Mime types now use the new list and view page design
- 8:31 AM Changeset [2011] by
- Quota types now use the new list and view page design
- 8:24 AM Changeset [2010] by
- File types now use the new list and view page design
- 8:19 AM Ticket #110 (Potential threading problem in /www/analyze/index.jsp) created by
- The file /www/analyze/index.jsp has declared a: […] The index is …
Feb 16, 2006:
- 5:38 PM Changeset [2009] by
- Fixed ticket #31 'Changing list columns - list of visible columns …
- 3:59 PM Ticket #50 (New list and view page design for Hardware type and Software type) closed by
- fixed
- 3:55 PM Changeset [2008] by
- Fixed ticket #50: New list and view page design for Hardware type and …
- 2:37 PM Ticket #28 (Returning to mainpage from viewing all the news) closed by
- fixed
- 2:37 PM Changeset [2007] by
- Fixed ticket #28 'It could be useful to have a way to get back to …
- 2:26 PM Changeset [2006] by
- Added Main.trimString() javascript function
- 2:15 PM Ticket #52 (Auto refresh job view when job not done) closed by
- fixed
- 2:15 PM Changeset [2005] by
- Fixing ticket #52. "Job view should be automatically updated every X …
- 2:05 PM Changeset [2004] by
- Client application admin now use the new list and view page design
- 1:56 PM Ticket #77 (Well annotations) closed by
- fixed: Fixed
- 1:24 PM Changeset [2003] by
- Fixed ticket #105: Load a filter preset gives an unexpected error
- 1:24 PM Ticket #105 (Load a filter preset gives an unexpected error) closed by
- fixed
- 12:35 PM Ticket #106 (Export with no exported columns gives an unexpected error) closed by
- fixed
- 12:35 PM Changeset [2002] by
- Fixed ticket #109: Can't find file 'save_as.jsp' when trying to browse …
- 12:33 PM Ticket #109 (Can't find file 'save_as.jsp' when trying to browse in Export options) closed by
- fixed
- 12:14 PM Ticket #25 (Changing information on how to get an account does not propagete to ...) closed by
- fixed
- 12:14 PM Changeset [2001] by
- Fixed ticket #25: Changing information on how to get an account does …
- 11:47 AM Changeset [2000] by
- Fixed ticket #77 and started working on removing unused code (ticket …
- 11:23 AM Changeset [1999] by
- Fixed ticket #79: LabeledExtract?.getHybridizations need a restriction …
- 11:23 AM Ticket #79 (LabeledExtract.getHybridizations need a restriction) closed by
- fixed
- 10:55 AM Ticket #65 (New list and view page design for Reporter types) closed by
- fixed
- 10:55 AM Changeset [1998] by
- Fixed ticket #65: New list and view page design for Reporter types
- 10:32 AM Ticket #46 (New list and view page design for News) closed by
- fixed
- 10:31 AM Changeset [1997] by
- Fixed ticket #46: New list and view page design for News
- 9:18 AM Ticket #94 (Fix list of pooled samples/extracts/labeled extracts on view pages) closed by
- fixed
- 9:16 AM Changeset [1996] by
- Fixed ticket #94: Fix list of pooled samples/extracts/labeled extracts …
- 8:58 AM Ticket #54 (New list and view page design for plugins) closed by
- fixed
- 8:53 AM Ticket #109 (Can't find file 'save_as.jsp' when trying to browse in Export options) created by
- The client tries to open a file that doesn't exist in Export options …
- 8:40 AM Changeset [1995] by
- Plugin configurations now use the new list and view page design. This …
- 8:16 AM Ticket #108 (Logging the change history of an item) created by
- Implement a log function that logs whenever an item is modified. It …
- 8:12 AM Ticket #107 (Any-to-any relation) created by
- Add functionality that allows creating links between any two types of …
Feb 15, 2006:
- 4:51 PM Ticket #106 (Export with no exported columns gives an unexpected error) created by
- Trying to Export a list with no columns in exported columns throws an …
- 4:19 PM Ticket #105 (Load a filter preset gives an unexpected error) created by
- Trying to load a preset filter from the Manage window - throws an …
- 3:03 PM Changeset [1994] by
- Fixed ticket #104: Add users to a role gives an unexpected error.
- 3:03 PM Ticket #104 (Add users to a role gives an unexpected error.) closed by
- fixed
- 1:53 PM Changeset [1993] by
- Plugin admin is now using the new list and view page design
- 1:51 PM Ticket #104 (Add users to a role gives an unexpected error.) created by
- There is an exception when pressing the button Add users... in Edit …
- 9:48 AM Changeset [1992] by
- Added -server flag which should fix the following error Exception in …
- 9:44 AM Changeset [1991] by
- Plugin types now use the new list and view page design
- 9:07 AM Changeset [1990] by
- Added jsp.compile target to build.xml which compiles all JSP pages
Feb 14, 2006:
- 9:06 PM Changeset [1989] by
- Updated development status
- 6:43 PM Changeset [1988] by
- added test for creating a protocol
- 5:26 PM Ticket #103 (Display name of current item in 'Set access permissions' dialog) created by
- When setting access permissions for an item, the name of the item in …
- 3:55 PM Changeset [1987] by
- Fixed ticket #57: Plate mappings view page is not complete
- 3:55 PM Ticket #57 (Plate mappings view page is not complete) closed by
- fixed
- 3:31 PM Changeset [1986] by
- Fixed ticket #102: User->New... gives: java.lang.NullPointerException?
- 3:30 PM Ticket #102 (User->New... gives: java.lang.NullPointerException on page ...) closed by
- fixed
- 3:25 PM Ticket #53 (Annotate items page is bad) closed by
- fixed
- 3:25 PM Changeset [1985] by
- Fixed ticket #53: Annotate items page is bad
- 2:49 PM Changeset [1984] by
- spelling error
- 1:42 PM Ticket #102 (User->New... gives: java.lang.NullPointerException on page ...) created by
- Trying to create/add a new user or a new group gives a …
- 1:23 PM Changeset [1983] by
- Fixed compilation error
- 1:08 PM Changeset [1982] by
- Fixing migration bug where users where mapped incorrectly
- 1:02 PM Changeset [1981] by
- Raw data types are now sorted
- 12:19 PM Ticket #101 (Add try / catch around all Query.iterate methods in list pages) created by
- If there is an error in the query the page will only display a stack …
- 12:12 PM Ticket #49 (New list and view page design for Annotation types) closed by
- fixed
- 12:12 PM Changeset [1980] by
- Fixed ticket #49: New list and view page design for Annotation types
- 9:58 AM Ticket #100 (IllegalArgumentException occurred calling getter of ...) closed by
- fixed
- 9:57 AM Changeset [1979] by
- Fixed ticket #100: IllegalArgumentException? occurred calling getter of …
- 8:07 AM Changeset [1978] by
- ArrayDesignPlate? is child item to ArrayDesign?
Feb 13, 2006:
- 4:52 PM Ticket #44 (Clean up the User prefences dialog box) closed by
- fixed
- 4:51 PM Changeset [1977] by
- Fixed ticket #44: Clean up the User prefences dialog box
- 4:18 PM Ticket #100 (IllegalArgumentException occurred calling getter of ...) created by
- Happens on the View / Files page. Seems to be related to Hibernate …
- 4:15 PM Ticket #61 (Array design can't be connected to plate) closed by
- fixed
- 4:00 PM Changeset [1976] by
- Fixed ticket #61: Array design can't be connected to plate
- 1:58 PM Changeset [1975] by
- Better implementation of HibernateUtil?.isEmptyDatabase
- 12:07 PM Changeset [1974] by
- Updated to Hibernate 3.1.2 Moved all Hibernate options from …
- 12:01 PM Changeset [1973] by
- Fixed NPE when not logged in.
- 11:50 AM Ticket #99 (java.lang.NoSuchMethodError: getHibernateLazyInitializer) closed by
- wontfix
- 11:49 AM Ticket #99 (java.lang.NoSuchMethodError: getHibernateLazyInitializer) created by
- This bug appears when proxy objects are needed to be initialized from …
- 11:15 AM Changeset [1972] by
- Now closes the DbControl? in case of an exception
- 11:07 AM Changeset [1971] by
- Test procedures for listpages and added new commands
- 9:08 AM Changeset [1970] by
- Edit user updated to new design. Finished ticket #47: New list and …
- 9:08 AM Ticket #47 (New list and view page design for Users, Groups and Roles) closed by
- fixed
Feb 10, 2006:
- 4:13 PM Changeset [1969] by
- New files for user admin
- 4:12 PM Changeset [1968] by
- Changed user admin to new list and view page design Edit user still …
- 2:54 PM Changeset [1967] by
- Organizing imports
- 2:19 PM Changeset [1966] by
- Added help/faq/report bug links to my base page
- 2:08 PM Ticket #73 (Mouse over highlighting the rows in tables) closed by
- fixed
- 1:59 PM Changeset [1965] by
- Change roles admin to new list and view page design Changed how …
- 11:20 AM Changeset [1964] by
- Correction factor plot tab is hidden for RawBioAssaySets?
- 11:05 AM Changeset [1963] by
- Listing plugin parameters in the properties view
- 10:37 AM Ticket #16 (Configurable link to Report a bug) closed by
- fixed
- 9:41 AM Changeset [1962] by
- Undo on a wrong commit
- 9:29 AM Ticket #98 ("Excluded" items are still included if a list is exported) created by
- For all list pages it is possible to specify the ID:s of items to …
- 9:21 AM Changeset [1961] by
- Added "exclude" option to all list pages. This option excludes items …
- 9:02 AM Changeset [1960] by
- Fixed ticket #16 Configurable link to Report a bug
Feb 9, 2006:
- 4:08 PM Changeset [1959] by
- Changed group admin to the new list and view page design
- 3:23 PM Ticket #63 (Clean up javadoc warnings) closed by
- fixed: Fixed
- 3:14 PM Changeset [1958] by
- Fixed ticket #63
- 2:43 PM Changeset [1957] by
- SessionControl? ID is now passed on to About dialog box
- 2:42 PM Changeset [1956] by
- Fixed border around more icon
- 2:18 PM Changeset [1955] by
- Fixed ticket #87: Installation should create 4 well annotations types …
- 2:18 PM Ticket #87 (Installation should create 4 well annotations types found in Base 1) closed by
- fixed
- 2:06 PM Ticket #59 (Correction factor plot) closed by
- fixed: Correction factor plot is generated by JFreePlotServlet.
- 2:04 PM Changeset [1954] by
- Added documentation and example plots
- 12:59 PM Changeset [1953] by
- Added optional parameters width, height, format and addCurrentOverviewData
- 12:58 PM Changeset [1952] by
- New BioAssays? inherit their parents name
- 12:04 PM Ticket #93 (Fix list of labeled extracts on View hybridization page) closed by
- fixed
- 12:03 PM Changeset [1951] by
- Fixed ticket #93: Fix list of labeled extracts on View hybridization page
- 11:54 AM Ticket #95 (Fix list of raw bioassays on view experiment page) closed by
- fixed
- 11:52 AM Ticket #97 (Trashcan functionality) created by
- Implement a trashcan functionality in the web interface were a user …
- 11:50 AM Changeset [1950] by
- Fixed ticket #95: Fix list of raw bioassays on view experiment page
- 11:18 AM Changeset [1949] by
- Added title attribute to links created by Base.getEncodedName
- 11:15 AM Ticket #96 (Inherit annotations) created by
- Add web interface for managing inherited annotations.
- 11:10 AM Ticket #95 (Fix list of raw bioassays on view experiment page) created by
- The list should have the same look and feel as the labeled extracts …
- 11:09 AM Ticket #94 (Fix list of pooled samples/extracts/labeled extracts on view pages) created by
- The list should have the same look and feel as the labeled extracts …
- 11:07 AM Ticket #93 (Fix list of labeled extracts on View hybridization page) created by
- Missing link to labeled extract and label
- 11:05 AM Ticket #56 (Plate view page is not complete) closed by
- fixed
- 11:05 AM Changeset [1948] by
- Fixed ticket #56: Plate view page is not complete
- 10:02 AM Changeset [1947] by
- Added getParents to BioAssay?
- 9:54 AM Changeset [1946] by
- Added ImaGene? raw data type
- 9:04 AM Changeset [1945] by
- Fixed ticket #92: Export doesn't work for Raw data
- 9:03 AM Ticket #92 (Export doesn't work for Raw data) closed by
- fixed
Feb 8, 2006:
- 3:57 PM Changeset [1944] by
- Fixed ticket #55: Plugin select view generates NullPointerException? …
- 3:56 PM Ticket #55 (Plugin select view generates NullPointerException when plugin ...) closed by
- fixed
- 2:17 PM Ticket #66 (Missing information in about raw data) closed by
- fixed
- 2:16 PM Changeset [1943] by
- Fixed ticket #66: Missing information in about raw data Added …
- 1:39 PM Changeset [1942] by
- TestRawBioAssay? now creates raw bio assay that links to array design …
- 11:55 AM Ticket #92 (Export doesn't work for Raw data) created by
- Probably because the new "subcontext" setting isn't passed to the …
- 11:36 AM Ticket #62 (Missing info about Features) closed by
- fixed
- 11:36 AM Changeset [1941] by
- Fixed ticket #62: Missing info about Features Added reporter and well …
- 10:59 AM Changeset [1940] by
- Ticket #64: Missing information about wells Added reporter columns to …
- 10:24 AM Changeset [1939] by
- Fixed ticket #64: Missing information about wells
- 10:24 AM Ticket #64 (Missing information about wells) closed by
- fixed
- 9:26 AM Changeset [1938] by
- Added QuantArray? raw data types Added some intensity formulas to other …
Feb 7, 2006:
- 2:47 PM Changeset [1937] by
- Added ChipSkipper? to raw data types.
- 2:05 PM Changeset [1936] by
- Fixed tickets: #82 LogExpression? and other mathematical expressions …
- 2:03 PM Ticket #83 (Add Log2Expression to query api) closed by
- fixed: Added Expressions.log2(x) and Expression.log(n, x)
- 2:03 PM Ticket #82 (LogExpression and other mathematical expressions uses different ...) closed by
- fixed
- 1:26 PM Ticket #72 (DiskUsage.getQuery is missing restriction) closed by
- fixed
- 1:25 PM Changeset [1935] by
- Fixed ticket #72: DiskUsage?.getQuery is missing restriction
- 1:08 PM Changeset [1934] by
- Fixed compilation error
- 12:16 PM Ticket #40 (Listing raw data of different raw data types may result in bad HQL) closed by
- fixed
- 12:13 PM Changeset [1933] by
- Fixed ticket #40: Listing raw data of different raw data types may …
- 11:48 AM Ticket #51 (File -> New menu is missing several items) closed by
- fixed: Added new buttons in File->New for each logical item under the View menu.
- 11:47 AM Changeset [1932] by
- Fixed ticket #51
- 11:09 AM Changeset [1931] by
- Fixed ticket #27
- 11:08 AM Ticket #27 (Analyze button in the experiment view) closed by
- fixed: Added analyze button. Only visible if the user has write permissions …
- 10:51 AM Changeset [1930] by
- Fixed ticket #45
- 10:51 AM Ticket #45 (BioAssay presets/filter settings not working) closed by
- fixed: Presets and default columns are now funktional. Fixing javascript …
- 10:31 AM Ticket #42 (Add missing columns in BioAssay table view) closed by
- fixed: All static columns are now selectable.
- 10:30 AM Changeset [1929] by
- Added extended property columns
- 9:45 AM Changeset [1928] by
- Added LGPL License for the JFreeChart package
- 9:41 AM Changeset [1927] by
- Added Agilent and GeneTAC raw data types
- 9:16 AM Changeset [1926] by
- Presets are now working. Added extra value columns
- 8:19 AM Ticket #91 (Export fails if there are too many items (MySQL only)) created by
- MySQL's current JDBC driver always loads the entire resultset into …
- 7:59 AM Changeset [1925] by
- Removing all warnings shown in javascript console in the firefox browser
- 7:46 AM Changeset [1924] by
- Fixed a few of the javadoc warnings
- 7:41 AM Ticket #48 (Add toolbar in BioAssay table view) closed by
- fixed: Toolbar is now showing one button 'Columns'
Feb 6, 2006:
- 11:19 PM Changeset [1923] by
- Removed temporary workarounds for Oracle.
- 11:13 PM Changeset [1922] by
- Experimental support for Oracle (doesn't pass all tests) Removed …
- 8:44 PM Changeset [1921] by
- Updated development status
- 4:03 PM Changeset [1920] by
- Fixed index out of range exception when getNumSpots is different from …
- 3:44 PM Changeset [1919] by
- Added SpotFinder? to raw data types.
- 3:36 PM Ticket #58 (Overview plot) closed by
- fixed: Overview plots are generated by the JFreePlotServlet
- 2:59 PM Changeset [1918] by
- Initial revision of the JFreePlotServlet
- 2:58 PM Changeset [1917] by
- Re-added "Mark as read" function to message list that was accidentally …
- 2:57 PM Changeset [1916] by
- Removing unused imports
- 2:46 PM Changeset [1915] by
- Added more intensity formulas to Genepix raw data type Added …
- 1:52 PM Changeset [1914] by
- Fixed bad OR operation to AND
- 12:24 PM Ticket #3 (Update doesn't create indexes) reopened by
- 12:22 PM Ticket #76 (initdb drops an existing database) closed by
- fixed
- 12:21 PM Changeset [1913] by
- Fixed bug #76: initdb drops an existing database Added updatedb.sh …
- 12:15 PM Changeset [1912] by
- Added Affymetric raw data type
- 12:03 PM Changeset [1911] by
- Added keyword.
- 11:55 AM Changeset [1910] by
- Added tags to user action. Added all web gui test modules source .tex …
- 10:45 AM Changeset [1909] by
- Fixed bug #36: Login with a deleted user account
- 10:45 AM Ticket #36 (Login with a deleted user account) closed by
- fixed
- 10:37 AM Ticket #41 (Dynamically recolor rows in lists) closed by
- fixed
- 10:37 AM Changeset [1908] by
- Dynamically recolor rows in lists (Ticket #41)
- 9:55 AM Ticket #67 (Welcome to BASE page) closed by
- fixed
- 9:54 AM Changeset [1907] by
- Added information to welcome page
- 8:14 AM Ticket #90 (Add more raw data types with intensity formulas to default settings) created by
- 8:14 AM Ticket #89 (Check list of hardware / software that the installation program is adding) created by
- 8:13 AM Ticket #88 (Installation should add print robots) created by
- 8:12 AM Ticket #87 (Installation should create 4 well annotations types found in Base 1) created by
- 8:10 AM Ticket #86 (New importer: Plate mapping) created by
- 8:10 AM Ticket #85 (Import plugins should specify filter for FileType) created by
- 8:09 AM Ticket #84 (getRequestInformation returns TODO in description fields for many plugins) created by
- Add relevant information for each plugin
- 8:08 AM Ticket #83 (Add Log2Expression to query api) created by
- 8:08 AM Ticket #82 (LogExpression and other mathematical expressions uses different ...) created by
- 8:06 AM Ticket #81 (SessionControl should be able to assign default groups and roles to ...) created by
- 8:06 AM Ticket #80 (RawDataPropertyExpression.getColumn should cache column information) created by
- 8:05 AM Ticket #79 (LabeledExtract.getHybridizations need a restriction) created by
- As it is now, it returns all hybridizations.
Feb 3, 2006:
- 5:16 PM Ticket #78 (pinbase median ratio normalization) created by
- Make the median ration normalizer pinbased using the information of blocks
- 5:13 PM Changeset [1906] by
- MedianRatioNormalization? added
- 4:10 PM Ticket #77 (Well annotations) created by
- Well annotations should be migrated. Annotation types should be …
- 4:08 PM Ticket #76 (initdb drops an existing database) created by
- Not good! You data in the database is lost.
- 4:07 PM Ticket #75 (Remove unused code in migrate package) created by
- Fix warnings shown in Eclipse for migration classes
- 4:07 PM Ticket #74 (HibernateUtil doesn't find configuration file if installation path ...) created by
- The space get encoded like %20, which is not interpreted correctly by …
- 4:05 PM Ticket #73 (Mouse over highlighting the rows in tables) created by
- Highlight each row the mouse pointer hovers over.
- 4:05 PM Ticket #72 (DiskUsage.getQuery is missing restriction) created by
- Must only load disk usage for the currently logged in user.
- 4:05 PM Ticket #71 (java.sql.Date is hardcoded in BasicBatcher) created by
- If we get timestamp columns this code will break.
- 4:04 PM Ticket #70 (Lazy creation of PreparedStatments in BasicBatcher.) created by
- Now they are always created when the BasicBatcher? object is created.
- 4:03 PM Ticket #69 (Funny looking line showing when last tab is visible) created by
- When selecting the last tab in Analysis -> BioAssaySet? view the bottom …
- 4:03 PM Ticket #68 (Application.BUILD should be updated automatically.) created by
- If possible, this value should be updated when doing an "ant package" …
- 4:02 PM Ticket #67 (Welcome to BASE page) created by
- Should list some important information like, new messages, news, disk …
- 4:01 PM Ticket #66 (Missing information in about raw data) created by
- No information about raw data, reporter or well.
- 4:00 PM Ticket #65 (New list and view page design for Reporter types) created by
- 3:59 PM Ticket #64 (Missing information about wells) created by
- No reporter information
- 3:59 PM Ticket #63 (Clean up javadoc warnings) created by
- Clean up 'ant javadoc' warnings generated during 'ant javadoc'
- 3:59 PM Ticket #62 (Missing info about Features) created by
- No information about reporter and wells
- 3:58 PM Ticket #61 (Array design can't be connected to plate) created by
- Add user interface for doing that.
- 3:58 PM Ticket #60 (BioAssay data export) created by
- Exporting BioAssay? data from the table view of BioAssay? data.
- 3:56 PM Ticket #59 (Correction factor plot) created by
- Add correction factor plot to the analysis view.
- 3:55 PM Ticket #58 (Overview plot) created by
- Add overview plot to the analysis view.
- 3:55 PM Ticket #57 (Plate mappings view page is not complete) created by
- Missing information about mappigns details
- 3:54 PM Ticket #56 (Plate view page is not complete) created by
- Missing information about parent plates.
- 3:53 PM Ticket #55 (Plugin select view generates NullPointerException when plugin ...) created by
- Plugin select view generates NullPointerException? when plugin …
- 3:52 PM Ticket #54 (New list and view page design for plugins) created by
- 3:52 PM Ticket #53 (Annotate items page is bad) created by
- Make i more like the page for entering paramters for plugins.
- 3:51 PM Ticket #52 (Auto refresh job view when job not done) created by
- Job view should be automatically updated every X seconds when the job …
- 3:50 PM Ticket #51 (File -> New menu is missing several items) created by
- File->New menu should contain several items that can be created …
- 3:49 PM Ticket #50 (New list and view page design for Hardware type and Software type) created by
- 3:49 PM Ticket #49 (New list and view page design for Annotation types) created by
- 3:48 PM Ticket #48 (Add toolbar in BioAssay table view) created by
- Toolbar containing "columns" button is missing in the BioAssay? table view
- 3:48 PM Ticket #47 (New list and view page design for Users, Groups and Roles) created by
- 3:48 PM Ticket #46 (New list and view page design for News) created by
- 3:47 PM Ticket #45 (BioAssay presets/filter settings not working) created by
- Javascripts that handle presets/filter selections are missing.
- 3:47 PM Ticket #44 (Clean up the User prefences dialog box) created by
- Remove the unused tab.
- 3:46 PM Ticket #43 (New icons in web interface) created by
- Most icons used in the web interface are copies of the same image. …
- 3:46 PM Ticket #42 (Add missing columns in BioAssay table view) created by
- BioAssay? table view contains only a few hardcoded columns.
- 3:45 PM Ticket #41 (Dynamically recolor rows in lists) created by
- When moving the mouse over rows in a list page, the current row should …
- 12:24 PM Changeset [1905] by
- corrected inster(query) javadoc
- 11:09 AM Changeset [1904] by
- sqrt added to expressions
- 11:08 AM Changeset [1903] by
- reset() sets firstResult and maxResult to 0
- 10:39 AM Changeset [1902] by
- Added link to GUI test doc.
- 10:36 AM Changeset [1901] by
- Bumped alpha version, added new information.
- 10:24 AM Changeset [1900] by
- Fixing javadoc warnings
- 9:41 AM Ticket #40 (Listing raw data of different raw data types may result in bad HQL) created by
- If you when listing raw data from one raw data type adds a filter or …
Feb 2, 2006:
- 5:10 PM Changeset [1899] by
- Added test procedures (to be) document.
- 4:08 PM Changeset [1898] by
- Removed CR at end of line.
- 3:40 PM Changeset [1897] by
- Added SelectedExpression?
- 2:42 PM Changeset [1896] by
- The option "In current project" in the preset list should not be …
- 2:35 PM Changeset [1895] by
- Projects now use the new list and view page design
- 1:51 PM Changeset [1894] by
- bugfix onBeforeCommit now sets numSpots
- 1:17 PM Changeset [1893] by
- View/Sessions? now use the new list page design
- 12:43 PM Changeset [1892] by
- Updated messages for server restart
- 11:51 AM Changeset [1891] by
- Fixed NPE in IntensityCalculatorUtil? if no progress reporter was specified.
- 11:49 AM Changeset [1890] by
- Application.stop now unloads all loaded configuration settings so …
- 11:18 AM Changeset [1889] by
- Added TableColumn? class
- 10:26 AM Changeset [1888] by
- Added Query.count() method
- 9:40 AM Changeset [1887] by
- ItemContext?.configureQuery now automatically joins required tables
- 9:22 AM Ticket #38 (Store error information for a job) closed by
- fixed: It was possible to store the stack trace in the status message field.
- 9:20 AM Changeset [1886] by
- Save stack trace in job's status message if there is an error. Fixed …
- 8:45 AM Changeset [1885] by
- Messages now use the new list and view page design
- 8:36 AM Changeset [1884] by
- Extracted stylesheet
Feb 1, 2006:
- 4:55 PM Ticket #39 (Handling a string with only blank space in required fields) created by
- When trying to submit a required textfield that just contains blank …
- 4:09 PM Changeset [1883] by
- Clarified default user id and password for BASE 2 web client.
- 4:02 PM Changeset [1882] by
- ItemContext?.configureQuery can now add sort order and filters, but …
- 2:20 PM Changeset [1881] by
- Jobs now use the new list and view page design
- 1:47 PM Ticket #38 (Store error information for a job) created by
- If a job complets with an error, there is only a short status message …
- 1:08 PM Ticket #37 (New/Edit user - Handling of duplicate login) created by
- There is an nondescriptuve error message when trying to give an user a …
- 12:11 PM Ticket #12 (Plugin configuration forgets parameter values) closed by
- fixed
- 12:11 PM Changeset [1880] by
- Fixed bug #12: Plugin configuration forgets parameter values
- 11:20 AM Changeset [1879] by
- ItemContext? now has a skeleton for configuring a DynamicQuery?
- 11:10 AM Ticket #36 (Login with a deleted user account) created by
- It is possible to login on an useraccount even if it has been deleted.
- 11:00 AM Changeset [1878] by
- Added bioassay table which now shows all intensity rows
- 10:41 AM Changeset [1877] by
- Export of raw data is now working as well
- 10:40 AM Changeset [1876] by
- Forgot to include this file in last commit
- 9:45 AM Changeset [1875] by
- Fixed simple export plugin so the old export function works with the …
Jan 31, 2006:
- 5:09 PM Changeset [1874] by
- Fixed toolbar borders when mixing table.css and toolbar.css …
- 4:02 PM Ticket #21 (ProgressReporter in IntensityCalculatorUtil methods) closed by
- fixed
- 4:02 PM Changeset [1873] by
- Fixed bug #21: ProgressReporter? in IntensityCalculatorUtil? methods
- 2:45 PM Changeset [1872] by
- Entire biomaterials section now use the new list and view page design
- 1:05 PM Ticket #33 (The fields in "Columns " button are sometimes too short, i.e. the text ...) closed by
- fixed: Text within selectboxes is now visible. The is wider in default mode …
- 1:05 PM Changeset [1871] by
- Fixing ticket #33
- 11:22 AM Changeset [1870] by
- Added experiment info above the analysis tree. The default job name is …
- 9:52 AM Ticket #35 (Edit annotations doesn't show all annotation types) closed by
- invalid: It wasn't a bug, it was just a link with wrong arguments (ie. not the …
- 8:50 AM Ticket #35 (Edit annotations doesn't show all annotation types) created by
- It seems like the form editing annotations doesn't show annotation …
- 8:26 AM Ticket #34 (Plugin for spot image generation) closed by
- fixed
- 8:25 AM Changeset [1869] by
- Added SpotImateCreator? plugin
Jan 30, 2006:
- 11:09 PM TracCgi edited by
- (diff)
- 11:09 PM TracInterfaceCustomization created by
- 11:09 PM TracUpgrade edited by
- (diff)
- 11:09 PM TracUnicode edited by
- (diff)
- 11:09 PM TracAccessibility edited by
- (diff)
- 11:09 PM TracEnvironment edited by
- (diff)
- 11:09 PM TracFastCgi edited by
- (diff)
- 11:09 PM TracGuide edited by
- (diff)
- 11:09 PM TracImport edited by
- (diff)
- 11:09 PM TracIni edited by
- (diff)
- 11:09 PM TracInstall edited by
- (diff)
- 11:09 PM TracLinks edited by
- (diff)
- 11:09 PM TracModPython edited by
- (diff)
- 11:09 PM TracNotification edited by
- (diff)
- 11:09 PM TracPermissions edited by
- (diff)
- 11:09 PM TracPlugins edited by
- (diff)
- 11:09 PM TracQuery edited by
- (diff)
- 11:09 PM TracReports edited by
- (diff)
- 11:09 PM TracRoadmap edited by
- (diff)
- 11:09 PM TracRss edited by
- (diff)
- 11:09 PM TracStandalone edited by
- (diff)
- 11:09 PM TracSupport edited by
- (diff)
- 11:09 PM TracSyntaxColoring edited by
- (diff)
- 11:09 PM TracTickets edited by
- (diff)
- 11:09 PM TracTicketsCustomFields edited by
- (diff)
- 11:09 PM TracTimeline edited by
- (diff)
- 11:09 PM TracWiki edited by
- (diff)
- 11:09 PM WikiDeletePage edited by
- (diff)
- 11:09 PM WikiFormatting edited by
- (diff)
- 11:09 PM WikiMacros edited by
- (diff)
- 11:09 PM WikiPageNames edited by
- (diff)
- 11:09 PM WikiProcessors edited by
- (diff)
- 11:09 PM WikiRestructuredTextLinks edited by
- (diff)
- 2:07 PM Ticket #34 (Plugin for spot image generation) created by
- The generation of spot images is now called directly from a JSP page. …
- 2:02 PM Ticket #32 (A plugin must set a response status ) closed by
- fixed
- 2:02 PM Changeset [1868] by
- Fixed bug #32: A plugin must set a response status
- 1:56 PM Changeset [1867] by
- BioAssaySet? view uses the new tabbed design.
- 1:43 PM Changeset [1866] by
- BioSources? now use the new list and view page design
- 1:17 PM Changeset [1865] by
- Fixed column widths for the new list design
- 1:06 PM Changeset [1864] by
- Labels now use the new list and view page design
- 12:52 PM Changeset [1863] by
- New view page design for: Protocol, Protocol type, Hardware, Software …
- 12:00 PM Changeset [1862] by
- Plates now use the new view page design Wells and plate events added …
- 9:16 AM Changeset [1861] by
- Arra slides, batches and design now use the new view page design
- 9:15 AM Changeset [1860] by
- Added visible attribute to Tab taglib
- 9:09 AM Changeset [1859] by
- Passed the job to the IntensityCalculatorUtil?
- 8:30 AM Changeset [1858] by
- Hybridizations now use the new view page design
Jan 27, 2006:
- 2:55 PM Changeset [1857] by
- Added view_bioassayset.jsp
- 2:51 PM Changeset [1856] by
- View scan now use the new view page design Added pages for scan images
- 1:46 PM Changeset [1855] by
- View raw bioassays now use the new view page design
- 12:05 PM Changeset [1854] by
- View experiment now use the new view page design
- 11:57 AM Changeset [1853] by
- View reporter now use the new view page design
- 11:47 AM Changeset [1852] by
- Plate geometries use the new view page design
- 11:39 AM Changeset [1851] by
- New design for view and list pages Plate types is the first example
Jan 26, 2006:
- 3:48 PM Changeset [1850] by
- Plate mapping now uses the new list design
- 3:05 PM Ticket #30 (Preset is not removed from drop-downlist after it had been deleted) closed by
- fixed: Sort of fixed. The preset is not removed from the list, but no …
- 3:04 PM Changeset [1849] by
- Partly fixed bug #30: Preset is not removed from drop-downlist after …
- 2:22 PM Changeset [1848] by
- Plate types are ownable and the owner is now displayed and included in …
- 2:15 PM Changeset [1847] by
- Plates now use the new list design
- 1:47 PM Changeset [1846] by
- First revision
- 12:03 PM Changeset [1845] by
- Added log4j.properties.in and removed log4j.properties so everyone can …
- 11:57 AM Ticket #24 (Adding an administrator name with non-US characters looks strange) closed by
- fixed: Updated base.config.in to not include any characterEncoding setting.
- 11:56 AM Ticket #3 (Update doesn't create indexes) closed by
- fixed
- 11:54 AM Changeset [1844] by
- Switched from SchemaUpdate? to SchemaExport? in createStaticTables so …
- 11:53 AM Ticket #33 (The fields in "Columns " button are sometimes too short, i.e. the text ...) created by
- When I'm editing "Set column order and visiblity" in the "edit raw …
- 11:51 AM Ticket #22 (Server configuration. Setting unlimited with G or Gb does not change ...) closed by
- fixed: i) Fixed. Tried to stora too large value in an int. Changed to long.
- 11:08 AM Ticket #32 (A plugin must set a response status ) created by
- If a plugin doesn't set a respose status, null is returned to the web …
- 10:36 AM Ticket #31 (Changing list columns - list of visible columns becomes empty) created by
- Webpage: Experiments Step1.Select 'Default Columns' in the drop …
- 8:40 AM Ticket #18 (BioMaterialEvent.addSource and BioMaterialEvent.removeSource doesn't work) closed by
- fixed
- 8:37 AM Changeset [1843] by
- Fixed bug #18: BioMaterialEvent?.addSource and …
- 8:36 AM Changeset [1842] by
- vertical align of td and th removed since it didn't work as intended
- 12:35 AM Changeset [1841] by
- Fixed latex to html translation.
Jan 25, 2006:
- 4:57 PM Changeset [1840] by
- Fixed most of bug #22: Server configuration. Setting unlimited with G …
- 4:12 PM Changeset [1839] by
- Protocol types now use the new list design
- 4:12 PM Changeset [1838] by
- Ordinal now gets a default value of 1, instead of 0 which is invalid.
- 4:04 PM Changeset [1837] by
- System items can no longer be deleted.
- 2:35 PM Ticket #30 (Preset is not removed from drop-downlist after it had been deleted) created by
- Experiments->Mangage(preset)->Delete a preset. The preset is not …
- 1:12 PM Changeset [1836] by
- Added date column and moved 'Run Plugin' button to the BioAssaySet? view
- 11:58 AM Changeset [1835] by
- Removed meta-tag setting the character set. It doesn't work and was …
- 11:48 AM Changeset [1834] by
- Deleted unused jsp page
- 11:46 AM Changeset [1833] by
- Plate types and Plate event types now use the new list design
- 11:45 AM Changeset [1832] by
- Added 'delete' method to RemovableUtil?
- 11:07 AM Changeset [1831] by
- If page taglib parameter title is null no title is written. This way …
- 11:05 AM Changeset [1830] by
- Added LIMIT values to user query
- 10:21 AM Changeset [1829] by
- Linked title breadcrumbs to their views
- 9:55 AM Changeset [1828] by
- Implemented restore functionality for bioassaysets in the analysis view
- 9:45 AM Ticket #29 (Filtering News on dates) created by
- Filter News on Start-, News- or End date There is nothing that …
- 8:25 AM Changeset [1827] by
- Plate geometry now uses the new list design
- 7:47 AM Changeset [1826] by
- Fixed bug #17: ItemContext?.configureQuery doesn't LEFT JOIN properties …
- 7:46 AM Ticket #17 (ItemContext.configureQuery doesn't LEFT JOIN properties with more than ...) closed by
- fixed
- 7:41 AM Changeset [1825] by
- Changed "Scan" to "Hybridization"
Jan 24, 2006:
- 4:45 PM Ticket #28 (Returning to mainpage from viewing all the news) created by
- It could be useful to have a way to get back to mainpage from the …
- 4:08 PM Changeset [1824] by
- ItemContext? now LEFT JOIN:s filters if it is an association.
- 3:40 PM Ticket #27 (Analyze button in the experiment view) created by
- Add an "Analyze" button to the view experiment toolbar.
- 3:31 PM Changeset [1823] by
- Added Run Plugin button which uses the default plugin selection view
- 2:39 PM Changeset [1822] by
- First draft of Server configuration test.
- 2:38 PM Ticket #26 (Cannot navigate to page 1 on list pages) closed by
- fixed
- 2:38 PM Changeset [1821] by
- Fixed bug #26: Cannot navigate to page 1 on list pages
- 2:26 PM Changeset [1820] by
- Array designs and features now use the new list design
- 1:45 PM Changeset [1819] by
- Indexed rows and fixed starting level of tree
- 1:43 PM Changeset [1818] by
- Indexed rows and fixed starting level of tree
- 1:25 PM Ticket #26 (Cannot navigate to page 1 on list pages) created by
- If you have navigated to another page than page 1 it is not possible …
- 1:24 PM Ticket #25 (Changing information on how to get an account does not propagete to ...) created by
- Read this tickets short summary. Do the change, logout, try to click …
- 1:16 PM Ticket #24 (Adding an administrator name with non-US characters looks strange) created by
- Try adding "Jari Häkkinen" to the Administrator name in Server setting …
- 1:13 PM Ticket #23 (Apply button in popup windows?) created by
- It would be nice with an apply button in popups that pushes changes …
- 1:00 PM Ticket #22 (Server configuration. Setting unlimited with G or Gb does not change ...) created by
- i) Setting unlimited with G or Gb does not change value when saved. …
- 12:37 PM Changeset [1817] by
- Bioassaysets are now represented by a redish folder, should probably …
- 11:32 AM Ticket #21 (ProgressReporter in IntensityCalculatorUtil methods) created by
- Add a ProgressReporter? parameter to …
- 11:32 AM Changeset [1816] by
- Renamed treeline images to lowercase
- 11:30 AM Changeset [1815] by
- Renamed treeLine to treeline
- 11:22 AM Changeset [1814] by
- Added dynamic analysis tree in the analysis view.
- 11:15 AM Changeset [1813] by
- Changed "Array batch" to new list design
- 10:30 AM Changeset [1812] by
- Changed "Array slides" to the new design
- 9:06 AM Changeset [1811] by
- Display annotations on "view item" page
- 8:46 AM Ticket #20 (Display and link to associated item from view page) created by
- When viewing a single item which has associations to other items, only …
- 8:43 AM Ticket #19 (Show/hide option for various section on a "view item" page) created by
- When viewing a single item, for example a hybridization, it should be …
- 8:16 AM Ticket #18 (BioMaterialEvent.addSource and BioMaterialEvent.removeSource doesn't work) created by
- If the "usedQuantity" parameter has been set to null for a source …
- 7:56 AM Changeset [1810] by
- Fixed NPE in Base.getAndSetCurrentContext if no "rowsperpage" …
Jan 23, 2006:
- 3:59 PM Changeset [1809] by
- Fixed problem with lists displaying all items if a negative …
- 3:42 PM Changeset [1808] by
- View hybridization page now lists labeled extracts
- 2:17 PM Changeset [1807] by
- Added "Today" button to calendar popup.
- 2:10 PM Changeset [1806] by
- Hybridizations now use the new list design
- 1:03 PM Changeset [1805] by
- Names of days now have three letters
- 12:16 PM Changeset [1804] by
- Removed debug alert message
- 11:57 AM Ticket #17 (ItemContext.configureQuery doesn't LEFT JOIN properties with more than ...) created by
- This results in queries which doesn't return any items with null …
- 11:33 AM Changeset [1803] by
- The new file manager has now fully replace the old one.
- 8:08 AM Changeset [1802] by
- Fixed vertical alignment of tables
Note: See TracTimeline
for information about the timeline view.
