Timeline



Feb 6, 2006:

11:19 PM Changeset [1923] by Nicklas Nordborg
Removed temporary workarounds for Oracle.
11:13 PM Changeset [1922] by Nicklas Nordborg
Experimental support for Oracle (doesn't pass all tests) Removed …
8:44 PM Changeset [1921] by Nicklas Nordborg
Updated development status
4:03 PM Changeset [1920] by Gregory Vincic
Fixed index out of range exception when getNumSpots is different from …
3:44 PM Changeset [1919] by Nicklas Nordborg
Added SpotFinder to raw data types.
3:36 PM Ticket #58 (Overview plot) closed by Gregory Vincic
fixed: Overview plots are generated by the JFreePlotServlet
2:59 PM Changeset [1918] by Gregory Vincic
Initial revision of the JFreePlotServlet
2:58 PM Changeset [1917] by Nicklas Nordborg
Re-added "Mark as read" function to message list that was accidentally …
2:57 PM Changeset [1916] by Gregory Vincic
Removing unused imports
2:46 PM Changeset [1915] by Nicklas Nordborg
Added more intensity formulas to Genepix raw data type Added …
1:52 PM Changeset [1914] by Nicklas Nordborg
Fixed bad OR operation to AND
12:24 PM Ticket #3 (Update doesn't create indexes) reopened by Nicklas Nordborg
12:22 PM Ticket #76 (initdb drops an existing database) closed by Nicklas Nordborg
fixed
12:21 PM Changeset [1913] by Nicklas Nordborg
Fixed bug #76: initdb drops an existing database Added updatedb.sh …
12:15 PM Changeset [1912] by Nicklas Nordborg
Added Affymetric raw data type
12:03 PM Changeset [1911] by Jari Häkkinen
Added keyword.
11:55 AM Changeset [1910] by Jari Häkkinen
Added tags to user action. Added all web gui test modules source .tex …
10:45 AM Changeset [1909] by Nicklas Nordborg
Fixed bug #36: Login with a deleted user account
10:45 AM Ticket #36 (Login with a deleted user account) closed by Nicklas Nordborg
fixed
10:41 AM Ticket #27 (Analyze button in the experiment view) updated by Gregory Vincic
Status changed
10:41 AM Ticket #51 (File -> New menu is missing several items) updated by Gregory Vincic
Status changed
10:40 AM Ticket #63 (Clean up javadoc warnings) updated by Gregory Vincic
Status, Component changed
10:40 AM Ticket #75 (Remove unused code in migrate package) updated by Gregory Vincic
Status, Priority, Milestone changed
10:39 AM Ticket #59 (Correction factor plot) updated by Gregory Vincic
Status changed
10:39 AM Ticket #48 (Add toolbar in BioAssay table view) updated by Gregory Vincic
Status changed
10:39 AM Ticket #45 (BioAssay presets/filter settings not working) updated by Gregory Vincic
Status changed
10:38 AM Ticket #42 (Add missing columns in BioAssay table view) updated by Gregory Vincic
Status changed
10:38 AM Ticket #90 (Add more raw data types with intensity formulas to default settings) updated by Nicklas Nordborg
Status changed
10:37 AM Ticket #90 (Add more raw data types with intensity formulas to default settings) updated by Nicklas Nordborg
Priority changed
10:37 AM Ticket #41 (Dynamically recolor rows in lists) closed by Nicklas Nordborg
fixed
10:37 AM Changeset [1908] by Nicklas Nordborg
Dynamically recolor rows in lists (Ticket #41)
9:56 AM Ticket #41 (Dynamically recolor rows in lists) updated by Nicklas Nordborg
Status, Milestone changed
9:55 AM Ticket #67 (Welcome to BASE page) closed by Nicklas Nordborg
fixed
9:54 AM Changeset [1907] by Nicklas Nordborg
Added information to welcome page
8:21 AM Ticket #70 (Lazy creation of PreparedStatments in BasicBatcher.) updated by Nicklas Nordborg
Milestone changed
8:20 AM Ticket #37 (New/Edit user - Handling of duplicate login) updated by Nicklas Nordborg
Milestone changed
8:20 AM Ticket #25 (Changing information on how to get an account does not propagete to ...) updated by Nicklas Nordborg
Milestone changed
8:20 AM Ticket #27 (Analyze button in the experiment view) updated by Nicklas Nordborg
Milestone changed
8:20 AM Ticket #29 (Filtering News on dates) updated by Nicklas Nordborg
Milestone changed
8:19 AM Ticket #31 (Changing list columns - list of visible columns becomes empty) updated by Nicklas Nordborg
Milestone changed
8:19 AM Ticket #28 (Returning to mainpage from viewing all the news) updated by Nicklas Nordborg
Milestone changed
8:19 AM Ticket #20 (Display and link to associated item from view page) updated by Nicklas Nordborg
Milestone changed
8:17 AM Ticket #39 (Handling a string with only blank space in required fields) updated by Nicklas Nordborg
Milestone changed
8:17 AM Ticket #36 (Login with a deleted user account) updated by Nicklas Nordborg
Milestone changed
8:16 AM Ticket #43 (New icons in web interface) updated by Nicklas Nordborg
Owner changed
8:16 AM Ticket #46 (New list and view page design for News) updated by Nicklas Nordborg
Owner changed
8:14 AM Ticket #90 (Add more raw data types with intensity formulas to default settings) created by Nicklas Nordborg
8:14 AM Ticket #89 (Check list of hardware / software that the installation program is adding) created by Nicklas Nordborg
8:13 AM Ticket #88 (Installation should add print robots) created by Nicklas Nordborg
8:12 AM Ticket #87 (Installation should create 4 well annotations types found in Base 1) created by Nicklas Nordborg
8:11 AM Ticket #85 (Import plugins should specify filter for FileType) updated by Nicklas Nordborg
Type changed
8:10 AM Ticket #86 (New importer: Plate mapping) created by Nicklas Nordborg
8:10 AM Ticket #85 (Import plugins should specify filter for FileType) created by Nicklas Nordborg
8:09 AM Ticket #84 (getRequestInformation returns TODO in description fields for many plugins) created by Nicklas Nordborg
Add relevant information for each plugin
8:08 AM Ticket #83 (Add Log2Expression to query api) created by Nicklas Nordborg
8:08 AM Ticket #82 (LogExpression and other mathematical expressions uses different ...) created by Nicklas Nordborg
8:06 AM Ticket #81 (SessionControl should be able to assign default groups and roles to ...) created by Nicklas Nordborg
8:06 AM Ticket #80 (RawDataPropertyExpression.getColumn should cache column information) created by Nicklas Nordborg
8:05 AM Ticket #79 (LabeledExtract.getHybridizations need a restriction) created by Nicklas Nordborg
As it is now, it returns all hybridizations.

Feb 3, 2006:

5:16 PM Ticket #78 (pinbase median ratio normalization) created by Johan Enell
Make the median ration normalizer pinbased using the information of blocks
5:13 PM Changeset [1906] by Johan Enell
MedianRatioNormalization added
4:23 PM Ticket #58 (Overview plot) updated by Gregory Vincic
Status changed
4:10 PM Ticket #77 (Well annotations) created by Gregory Vincic
Well annotations should be migrated. Annotation types should be …
4:08 PM Ticket #76 (initdb drops an existing database) created by Nicklas Nordborg
Not good! You data in the database is lost.
4:07 PM Ticket #75 (Remove unused code in migrate package) created by Gregory Vincic
Fix warnings shown in Eclipse for migration classes
4:07 PM Ticket #74 (HibernateUtil doesn't find configuration file if installation path ...) created by Nicklas Nordborg
The space get encoded like %20, which is not interpreted correctly by …
4:05 PM Ticket #73 (Mouse over highlighting the rows in tables) created by Gregory Vincic
Highlight each row the mouse pointer hovers over.
4:05 PM Ticket #72 (DiskUsage.getQuery is missing restriction) created by Nicklas Nordborg
Must only load disk usage for the currently logged in user.
4:05 PM Ticket #71 (java.sql.Date is hardcoded in BasicBatcher) created by Nicklas Nordborg
If we get timestamp columns this code will break.
4:04 PM Ticket #70 (Lazy creation of PreparedStatments in BasicBatcher.) created by Nicklas Nordborg
Now they are always created when the BasicBatcher object is created.
4:03 PM Ticket #69 (Funny looking line showing when last tab is visible) created by Gregory Vincic
When selecting the last tab in Analysis -> BioAssaySet view the bottom …
4:03 PM Ticket #68 (Application.BUILD should be updated automatically.) created by Nicklas Nordborg
If possible, this value should be updated when doing an "ant package" …
4:02 PM Ticket #67 (Welcome to BASE page) created by Nicklas Nordborg
Should list some important information like, new messages, news, disk …
4:01 PM Ticket #66 (Missing information in about raw data) created by Nicklas Nordborg
No information about raw data, reporter or well.
4:00 PM Ticket #65 (New list and view page design for Reporter types) created by Nicklas Nordborg
3:59 PM Ticket #64 (Missing information about wells) created by Nicklas Nordborg
No reporter information
3:59 PM Ticket #63 (Clean up javadoc warnings) created by Gregory Vincic
Clean up 'ant javadoc' warnings generated during 'ant javadoc'
3:59 PM Ticket #62 (Missing info about Features) created by Nicklas Nordborg
No information about reporter and wells
3:58 PM Ticket #61 (Array design can't be connected to plate) created by Nicklas Nordborg
Add user interface for doing that.
3:58 PM Ticket #60 (BioAssay data export) created by Gregory Vincic
Exporting BioAssay data from the table view of BioAssay data.
3:57 PM Ticket #41 (Dynamically recolor rows in lists) updated by Nicklas Nordborg
Owner changed
3:57 PM Ticket #54 (New list and view page design for plugins) updated by Nicklas Nordborg
Owner changed
3:56 PM Ticket #53 (Annotate items page is bad) updated by Nicklas Nordborg
Owner changed
3:56 PM Ticket #56 (Plate view page is not complete) updated by Nicklas Nordborg
Owner changed
3:56 PM Ticket #44 (Clean up the User prefences dialog box) updated by Nicklas Nordborg
Owner changed
3:56 PM Ticket #59 (Correction factor plot) created by Gregory Vincic
Add correction factor plot to the analysis view.
3:55 PM Ticket #49 (New list and view page design for Annotation types) updated by Nicklas Nordborg
Owner changed
3:55 PM Ticket #58 (Overview plot) created by Gregory Vincic
Add overview plot to the analysis view.
3:55 PM Ticket #57 (Plate mappings view page is not complete) created by Nicklas Nordborg
Missing information about mappigns details
3:54 PM Ticket #56 (Plate view page is not complete) created by Nicklas Nordborg
Missing information about parent plates.
3:53 PM Ticket #55 (Plugin select view generates NullPointerException when plugin ...) created by Gregory Vincic
Plugin select view generates NullPointerException when plugin …
3:52 PM Ticket #54 (New list and view page design for plugins) created by Nicklas Nordborg
3:52 PM Ticket #53 (Annotate items page is bad) created by Nicklas Nordborg
Make i more like the page for entering paramters for plugins.
3:51 PM Ticket #52 (Auto refresh job view when job not done) created by Gregory Vincic
Job view should be automatically updated every X seconds when the job …
3:50 PM Ticket #51 (File -> New menu is missing several items) created by Gregory Vincic
File->New menu should contain several items that can be created …
3:49 PM Ticket #50 (New list and view page design for Hardware type and Software type) created by Nicklas Nordborg
3:49 PM Ticket #49 (New list and view page design for Annotation types) created by Nicklas Nordborg
3:48 PM Ticket #48 (Add toolbar in BioAssay table view) created by Gregory Vincic
Toolbar containing "columns" button is missing in the BioAssay table view
3:48 PM Ticket #47 (New list and view page design for Users, Groups and Roles) created by Nicklas Nordborg
3:48 PM Ticket #46 (New list and view page design for News) created by Nicklas Nordborg
3:47 PM Ticket #45 (BioAssay presets/filter settings not working) created by Gregory Vincic
Javascripts that handle presets/filter selections are missing.
3:47 PM Ticket #44 (Clean up the User prefences dialog box) created by Nicklas Nordborg
Remove the unused tab.
3:46 PM Ticket #43 (New icons in web interface) created by Nicklas Nordborg
Most icons used in the web interface are copies of the same image. …
3:46 PM Ticket #42 (Add missing columns in BioAssay table view) created by Gregory Vincic
BioAssay table view contains only a few hardcoded columns.
3:45 PM Ticket #41 (Dynamically recolor rows in lists) created by Nicklas Nordborg
When moving the mouse over rows in a list page, the current row should …
12:24 PM Changeset [1905] by Johan Enell
corrected inster(query) javadoc
11:09 AM Changeset [1904] by Johan Enell
sqrt added to expressions
11:08 AM Changeset [1903] by Johan Enell
reset() sets firstResult and maxResult to 0
10:39 AM Changeset [1902] by Jari Häkkinen
Added link to GUI test doc.
10:36 AM Changeset [1901] by Jari Häkkinen
Bumped alpha version, added new information.
10:24 AM Changeset [1900] by Gregory Vincic
Fixing javadoc warnings
9:41 AM Ticket #40 (Listing raw data of different raw data types may result in bad HQL) created by Nicklas Nordborg
If you when listing raw data from one raw data type adds a filter or …

Feb 2, 2006:

5:10 PM Changeset [1899] by Jari Häkkinen
Added test procedures (to be) document.
4:08 PM Changeset [1898] by Martin Svensson
Removed CR at end of line.
3:40 PM Changeset [1897] by Nicklas Nordborg
Added SelectedExpression
2:42 PM Changeset [1896] by Nicklas Nordborg
The option "In current project" in the preset list should not be …
2:35 PM Changeset [1895] by Nicklas Nordborg
Projects now use the new list and view page design
1:51 PM Changeset [1894] by Johan Enell
bugfix onBeforeCommit now sets numSpots
1:17 PM Changeset [1893] by Nicklas Nordborg
View/Sessions now use the new list page design
12:43 PM Changeset [1892] by Nicklas Nordborg
Updated messages for server restart
11:51 AM Changeset [1891] by Nicklas Nordborg
Fixed NPE in IntensityCalculatorUtil if no progress reporter was specified.
11:49 AM Changeset [1890] by Nicklas Nordborg
Application.stop now unloads all loaded configuration settings so …
11:18 AM Changeset [1889] by Gregory Vincic
Added TableColumn class
10:26 AM Changeset [1888] by Nicklas Nordborg
Added Query.count() method
9:40 AM Changeset [1887] by Nicklas Nordborg
ItemContext.configureQuery now automatically joins required tables
9:22 AM Ticket #38 (Store error information for a job) closed by Nicklas Nordborg
fixed: It was possible to store the stack trace in the status message field.
9:20 AM Changeset [1886] by Nicklas Nordborg
Save stack trace in job's status message if there is an error. Fixed …
8:45 AM Changeset [1885] by Nicklas Nordborg
Messages now use the new list and view page design
8:36 AM Changeset [1884] by Gregory Vincic
Extracted stylesheet

Feb 1, 2006:

4:55 PM Ticket #39 (Handling a string with only blank space in required fields) created by Martin Svensson
When trying to submit a required textfield that just contains blank …
4:09 PM Changeset [1883] by Jari Häkkinen
Clarified default user id and password for BASE 2 web client.
4:02 PM Changeset [1882] by Nicklas Nordborg
ItemContext.configureQuery can now add sort order and filters, but …
2:26 PM Ticket #33 (The fields in "Columns " button are sometimes too short, i.e. the text ...) updated by Gregory Vincic
Milestone changed
2:20 PM Changeset [1881] by Nicklas Nordborg
Jobs now use the new list and view page design
1:47 PM Ticket #38 (Store error information for a job) created by Nicklas Nordborg
If a job complets with an error, there is only a short status message …
1:08 PM Ticket #37 (New/Edit user - Handling of duplicate login) created by Martin Svensson
There is an nondescriptuve error message when trying to give an user a …
12:12 PM Ticket #36 (Login with a deleted user account) updated by Nicklas Nordborg
Status changed
12:12 PM Ticket #36 (Login with a deleted user account) updated by Nicklas Nordborg
Component, Owner changed
12:11 PM Ticket #12 (Plugin configuration forgets parameter values) closed by Nicklas Nordborg
fixed
12:11 PM Changeset [1880] by Nicklas Nordborg
Fixed bug #12: Plugin configuration forgets parameter values
11:20 AM Changeset [1879] by Nicklas Nordborg
ItemContext now has a skeleton for configuring a DynamicQuery
11:10 AM Ticket #36 (Login with a deleted user account) created by Martin Svensson
It is possible to login on an useraccount even if it has been deleted.
11:00 AM Changeset [1878] by Gregory Vincic
Added bioassay table which now shows all intensity rows
10:41 AM Changeset [1877] by Nicklas Nordborg
Export of raw data is now working as well
10:40 AM Changeset [1876] by Nicklas Nordborg
Forgot to include this file in last commit
9:45 AM Changeset [1875] by Nicklas Nordborg
Fixed simple export plugin so the old export function works with the …

Jan 31, 2006:

5:09 PM Changeset [1874] by Gregory Vincic
Fixed toolbar borders when mixing table.css and toolbar.css …
4:02 PM Ticket #21 (ProgressReporter in IntensityCalculatorUtil methods) closed by Nicklas Nordborg
fixed
4:02 PM Changeset [1873] by Nicklas Nordborg
Fixed bug #21: ProgressReporter in IntensityCalculatorUtil methods
2:45 PM Changeset [1872] by Nicklas Nordborg
Entire biomaterials section now use the new list and view page design
1:05 PM Ticket #33 (The fields in "Columns " button are sometimes too short, i.e. the text ...) closed by Gregory Vincic
fixed: Text within selectboxes is now visible. The is wider in default mode …
1:05 PM Changeset [1871] by Gregory Vincic
Fixing ticket #33
1:03 PM Ticket #33 (The fields in "Columns " button are sometimes too short, i.e. the text ...) updated by Gregory Vincic
Status changed
11:22 AM Changeset [1870] by Gregory Vincic
Added experiment info above the analysis tree. The default job name is …
9:52 AM Ticket #35 (Edit annotations doesn't show all annotation types) closed by Nicklas Nordborg
invalid: It wasn't a bug, it was just a link with wrong arguments (ie. not the …
8:50 AM Ticket #35 (Edit annotations doesn't show all annotation types) created by Nicklas Nordborg
It seems like the form editing annotations doesn't show annotation …
8:26 AM Ticket #34 (Plugin for spot image generation) closed by Nicklas Nordborg
fixed
8:25 AM Changeset [1869] by Nicklas Nordborg
Added SpotImateCreator plugin

Jan 30, 2006:

11:09 PM TracCgi edited by trac
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11:09 PM TracInterfaceCustomization created by trac
11:09 PM TracUpgrade edited by trac
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11:09 PM TracUnicode edited by trac
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11:09 PM TracAccessibility edited by trac
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11:09 PM TracEnvironment edited by trac
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11:09 PM TracFastCgi edited by trac
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11:09 PM TracGuide edited by trac
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11:09 PM TracImport edited by trac
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11:09 PM TracIni edited by trac
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11:09 PM TracInstall edited by trac
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11:09 PM TracLinks edited by trac
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11:09 PM TracModPython edited by trac
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11:09 PM TracNotification edited by trac
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11:09 PM TracPermissions edited by trac
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11:09 PM TracPlugins edited by trac
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11:09 PM TracQuery edited by trac
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11:09 PM TracReports edited by trac
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11:09 PM TracRoadmap edited by trac
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11:09 PM TracRss edited by trac
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11:09 PM TracStandalone edited by trac
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11:09 PM TracSupport edited by trac
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11:09 PM TracSyntaxColoring edited by trac
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11:09 PM TracTickets edited by trac
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11:09 PM TracTicketsCustomFields edited by trac
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11:09 PM TracTimeline edited by trac
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11:09 PM TracWiki edited by trac
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11:09 PM WikiDeletePage edited by trac
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11:09 PM WikiFormatting edited by trac
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11:09 PM WikiMacros edited by trac
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11:09 PM WikiPageNames edited by trac
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11:09 PM WikiProcessors edited by trac
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11:09 PM WikiRestructuredTextLinks edited by trac
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2:07 PM Ticket #34 (Plugin for spot image generation) created by Nicklas Nordborg
The generation of spot images is now called directly from a JSP page. …
2:02 PM Ticket #32 (A plugin must set a response status ) closed by Nicklas Nordborg
fixed
2:02 PM Changeset [1868] by Nicklas Nordborg
Fixed bug #32: A plugin must set a response status
1:56 PM Changeset [1867] by Gregory Vincic
BioAssaySet view uses the new tabbed design.
1:43 PM Changeset [1866] by Nicklas Nordborg
BioSources now use the new list and view page design
1:17 PM Changeset [1865] by Nicklas Nordborg
Fixed column widths for the new list design
1:06 PM Changeset [1864] by Nicklas Nordborg
Labels now use the new list and view page design
12:52 PM Changeset [1863] by Nicklas Nordborg
New view page design for: Protocol, Protocol type, Hardware, Software …
12:00 PM Changeset [1862] by Nicklas Nordborg
Plates now use the new view page design Wells and plate events added …
9:16 AM Changeset [1861] by Nicklas Nordborg
Arra slides, batches and design now use the new view page design
9:15 AM Changeset [1860] by Nicklas Nordborg
Added visible attribute to Tab taglib
9:09 AM Changeset [1859] by Gregory Vincic
Passed the job to the IntensityCalculatorUtil
8:30 AM Changeset [1858] by Nicklas Nordborg
Hybridizations now use the new view page design

Jan 27, 2006:

2:55 PM Changeset [1857] by Gregory Vincic
Added view_bioassayset.jsp
2:51 PM Changeset [1856] by Nicklas Nordborg
View scan now use the new view page design Added pages for scan images
1:46 PM Changeset [1855] by Nicklas Nordborg
View raw bioassays now use the new view page design
12:05 PM Changeset [1854] by Nicklas Nordborg
View experiment now use the new view page design
11:57 AM Changeset [1853] by Nicklas Nordborg
View reporter now use the new view page design
11:47 AM Changeset [1852] by Nicklas Nordborg
Plate geometries use the new view page design
11:39 AM Changeset [1851] by Nicklas Nordborg
New design for view and list pages Plate types is the first example

Jan 26, 2006:

3:48 PM Changeset [1850] by Nicklas Nordborg
Plate mapping now uses the new list design
3:05 PM Ticket #30 (Preset is not removed from drop-downlist after it had been deleted) closed by Nicklas Nordborg
fixed: Sort of fixed. The preset is not removed from the list, but no …
3:04 PM Changeset [1849] by Nicklas Nordborg
Partly fixed bug #30: Preset is not removed from drop-downlist after …
2:22 PM Changeset [1848] by Nicklas Nordborg
Plate types are ownable and the owner is now displayed and included in …
2:15 PM Changeset [1847] by Nicklas Nordborg
Plates now use the new list design
1:47 PM Changeset [1846] by Martin Svensson
First revision
12:03 PM Changeset [1845] by Nicklas Nordborg
Added log4j.properties.in and removed log4j.properties so everyone can …
11:57 AM Ticket #24 (Adding an administrator name with non-US characters looks strange) closed by Nicklas Nordborg
fixed: Updated base.config.in to not include any characterEncoding setting.
11:56 AM Ticket #3 (Update doesn't create indexes) closed by Nicklas Nordborg
fixed
11:54 AM Changeset [1844] by Nicklas Nordborg
Switched from SchemaUpdate to SchemaExport in createStaticTables so …
11:53 AM Ticket #33 (The fields in "Columns " button are sometimes too short, i.e. the text ...) created by Jari Häkkinen
When I'm editing "Set column order and visiblity" in the "edit raw …
11:51 AM Ticket #22 (Server configuration. Setting unlimited with G or Gb does not change ...) closed by Nicklas Nordborg
fixed: i) Fixed. Tried to stora too large value in an int. Changed to long.
11:08 AM Ticket #32 (A plugin must set a response status ) created by Nicklas Nordborg
If a plugin doesn't set a respose status, null is returned to the web …
10:36 AM Ticket #31 (Changing list columns - list of visible columns becomes empty) created by Martin Svensson
Webpage: Experiments Step1.Select 'Default Columns' in the drop …
8:40 AM Ticket #18 (BioMaterialEvent.addSource and BioMaterialEvent.removeSource doesn't work) closed by Nicklas Nordborg
fixed
8:37 AM Changeset [1843] by Nicklas Nordborg
Fixed bug #18: BioMaterialEvent.addSource and …
8:36 AM Changeset [1842] by Nicklas Nordborg
vertical align of td and th removed since it didn't work as intended
12:35 AM Changeset [1841] by Jari Häkkinen
Fixed latex to html translation.

Jan 25, 2006:

5:09 PM Ticket #25 (Changing information on how to get an account does not propagete to ...) updated by Nicklas Nordborg
Owner, Status changed
The cause of this behaviour is that those settings are loaded into the …
4:57 PM Changeset [1840] by Nicklas Nordborg
Fixed most of bug #22: Server configuration. Setting unlimited with G …
4:56 PM Ticket #22 (Server configuration. Setting unlimited with G or Gb does not change ...) updated by Nicklas Nordborg
Owner changed
i) Please clarify! Either there is a value OR the unlimited option is …
4:12 PM Changeset [1839] by Nicklas Nordborg
Protocol types now use the new list design
4:12 PM Changeset [1838] by Nicklas Nordborg
Ordinal now gets a default value of 1, instead of 0 which is invalid.
4:04 PM Changeset [1837] by Nicklas Nordborg
System items can no longer be deleted.
2:35 PM Ticket #30 (Preset is not removed from drop-downlist after it had been deleted) created by Martin Svensson
Experiments->Mangage(preset)->Delete a preset. The preset is not …
1:12 PM Changeset [1836] by Gregory Vincic
Added date column and moved 'Run Plugin' button to the BioAssaySet view
11:58 AM Changeset [1835] by Nicklas Nordborg
Removed meta-tag setting the character set. It doesn't work and was …
11:48 AM Changeset [1834] by Nicklas Nordborg
Deleted unused jsp page
11:46 AM Changeset [1833] by Nicklas Nordborg
Plate types and Plate event types now use the new list design
11:45 AM Changeset [1832] by Nicklas Nordborg
Added 'delete' method to RemovableUtil
11:07 AM Changeset [1831] by Gregory Vincic
If page taglib parameter title is null no title is written. This way …
11:05 AM Changeset [1830] by Gregory Vincic
Added LIMIT values to user query
10:21 AM Changeset [1829] by Gregory Vincic
Linked title breadcrumbs to their views
9:55 AM Changeset [1828] by Gregory Vincic
Implemented restore functionality for bioassaysets in the analysis view
9:45 AM Ticket #29 (Filtering News on dates) created by Martin Svensson
Filter News on Start-, News- or End date There is nothing that …
8:47 AM Ticket #3 (Update doesn't create indexes) updated by Nicklas Nordborg
Priority changed
8:46 AM Ticket #24 (Adding an administrator name with non-US characters looks strange) updated by Nicklas Nordborg
Owner changed
This is probably a server configuration problem. The file …
8:25 AM Changeset [1827] by Nicklas Nordborg
Plate geometry now uses the new list design
7:47 AM Changeset [1826] by Nicklas Nordborg
Fixed bug #17: ItemContext.configureQuery doesn't LEFT JOIN properties …
7:46 AM Ticket #17 (ItemContext.configureQuery doesn't LEFT JOIN properties with more than ...) closed by Nicklas Nordborg
fixed
7:41 AM Changeset [1825] by Nicklas Nordborg
Changed "Scan" to "Hybridization"

Jan 24, 2006:

4:45 PM Ticket #28 (Returning to mainpage from viewing all the news) created by Martin Svensson
It could be useful to have a way to get back to mainpage from the …
4:08 PM Changeset [1824] by Nicklas Nordborg
ItemContext now LEFT JOIN:s filters if it is an association.
3:41 PM Ticket #27 (Analyze button in the experiment view) updated by Gregory Vincic
Type changed
3:40 PM Ticket #27 (Analyze button in the experiment view) created by Gregory Vincic
Add an "Analyze" button to the view experiment toolbar.
3:31 PM Changeset [1823] by Gregory Vincic
Added Run Plugin button which uses the default plugin selection view
2:39 PM Changeset [1822] by Jari Häkkinen
First draft of Server configuration test.
2:38 PM Ticket #26 (Cannot navigate to page 1 on list pages) closed by Nicklas Nordborg
fixed
2:38 PM Changeset [1821] by Nicklas Nordborg
Fixed bug #26: Cannot navigate to page 1 on list pages
2:26 PM Changeset [1820] by Nicklas Nordborg
Array designs and features now use the new list design
1:45 PM Changeset [1819] by Gregory Vincic
Indexed rows and fixed starting level of tree
1:43 PM Changeset [1818] by Gregory Vincic
Indexed rows and fixed starting level of tree
1:28 PM Ticket #25 (Changing information on how to get an account does not propagete to ...) updated by Jari Häkkinen
Description changed
1:25 PM Ticket #26 (Cannot navigate to page 1 on list pages) created by Nicklas Nordborg
If you have navigated to another page than page 1 it is not possible …
1:24 PM Ticket #25 (Changing information on how to get an account does not propagete to ...) created by Jari Häkkinen
Read this tickets short summary. Do the change, logout, try to click …
1:16 PM Ticket #24 (Adding an administrator name with non-US characters looks strange) created by Jari Häkkinen
Try adding "Jari Häkkinen" to the Administrator name in Server setting …
1:13 PM Ticket #23 (Apply button in popup windows?) created by Jari Häkkinen
It would be nice with an apply button in popups that pushes changes …
1:00 PM Ticket #22 (Server configuration. Setting unlimited with G or Gb does not change ...) created by Jari Häkkinen
i) Setting unlimited with G or Gb does not change value when saved. …
12:37 PM Changeset [1817] by Gregory Vincic
Bioassaysets are now represented by a redish folder, should probably …
11:32 AM Ticket #21 (ProgressReporter in IntensityCalculatorUtil methods) created by Nicklas Nordborg
Add a ProgressReporter parameter to …
11:32 AM Changeset [1816] by Gregory Vincic
Renamed treeline images to lowercase
11:30 AM Changeset [1815] by Gregory Vincic
Renamed treeLine to treeline
11:22 AM Changeset [1814] by Gregory Vincic
Added dynamic analysis tree in the analysis view.
11:15 AM Changeset [1813] by Nicklas Nordborg
Changed "Array batch" to new list design
10:30 AM Changeset [1812] by Nicklas Nordborg
Changed "Array slides" to the new design
9:06 AM Changeset [1811] by Nicklas Nordborg
Display annotations on "view item" page
8:46 AM Ticket #20 (Display and link to associated item from view page) created by Nicklas Nordborg
When viewing a single item which has associations to other items, only …
8:43 AM Ticket #19 (Show/hide option for various section on a "view item" page) created by Nicklas Nordborg
When viewing a single item, for example a hybridization, it should be …
8:16 AM Ticket #18 (BioMaterialEvent.addSource and BioMaterialEvent.removeSource doesn't work) created by Nicklas Nordborg
If the "usedQuantity" parameter has been set to null for a source …
7:56 AM Changeset [1810] by Nicklas Nordborg
Fixed NPE in Base.getAndSetCurrentContext if no "rowsperpage" …

Jan 23, 2006:

3:59 PM Changeset [1809] by Nicklas Nordborg
Fixed problem with lists displaying all items if a negative …
3:42 PM Changeset [1808] by Nicklas Nordborg
View hybridization page now lists labeled extracts
2:17 PM Changeset [1807] by Nicklas Nordborg
Added "Today" button to calendar popup.
2:10 PM Changeset [1806] by Nicklas Nordborg
Hybridizations now use the new list design
1:20 PM Ticket #17 (ItemContext.configureQuery doesn't LEFT JOIN properties with more than ...) updated by Nicklas Nordborg
Status, Description changed
The same if true if we have a filter on that property. It will not …
1:03 PM Changeset [1805] by Nicklas Nordborg
Names of days now have three letters
12:16 PM Changeset [1804] by Nicklas Nordborg
Removed debug alert message
11:57 AM Ticket #17 (ItemContext.configureQuery doesn't LEFT JOIN properties with more than ...) created by Nicklas Nordborg
This results in queries which doesn't return any items with null …
11:33 AM Changeset [1803] by Nicklas Nordborg
The new file manager has now fully replace the old one.
8:08 AM Changeset [1802] by Nicklas Nordborg
Fixed vertical alignment of tables

Jan 21, 2006:

1:08 PM Changeset [1801] by Nicklas Nordborg
Removed lots of unused imports.

Jan 20, 2006:

4:08 PM Changeset [1800] by Nicklas Nordborg
Fixed some problems with loading proxies and many-to-any mapping in …
2:42 PM Changeset [1799] by Nicklas Nordborg
TestSpotImages is now displaying spot images (was commented out since …
2:32 PM Changeset [1798] by Nicklas Nordborg
The file manager is now working as a standalone part.
1:32 PM Changeset [1797] by Gregory Vincic
Fixed bug where roles where not assigned due to a closed DbControl
11:12 AM Ticket #13 (Removing experiment while job exists leaves the job waiting indefinitly) closed by Nicklas Nordborg
fixed: Fixed. The error is now reported in the same way as any other job …
11:11 AM Ticket #15 (DemoServer not working even for basic testing) closed by Nicklas Nordborg
duplicate: Fixed some time ago. Shouldn't be a problem once the demo server is …
11:06 AM Changeset [1796] by Nicklas Nordborg
Internal job queue no longer chokes on missing item parameters. …
10:38 AM Ticket #16 (Configurable link to Report a bug) created by Nicklas Nordborg
The help meny has an item "Reporter a bug" which leads to a …

Jan 19, 2006:

8:48 PM Changeset [1795] by Nicklas Nordborg
Removed lots of unused imports.
2:54 PM Changeset [1794] by Nicklas Nordborg
Added File manager with the new list design. The old is still …
2:26 PM Changeset [1793] by Johan Enell
PrintMapFlatFileImporter version1.0
12:11 PM Changeset [1792] by Jari Häkkinen
Inital infrastructure for test documents.

Jan 18, 2006:

5:33 PM Changeset [1791] by Gregory Vincic
Plugin test updated. Analysis gui updated. Changed log4j properties …
4:50 PM Changeset [1790] by Johan Enell
Handles sections correct
3:56 PM Changeset [1789] by Nicklas Nordborg
The current context can now be passed on to plugins when configuring …
2:23 PM Changeset [1788] by Nicklas Nordborg
Changed login page so that the encrypted password is sent in a hidden …
2:04 PM Changeset [1787] by Nicklas Nordborg
Plugins can now use customized JSP pages. Test case with NullPlugin.
1:30 PM Ticket #15 (DemoServer not working even for basic testing) created by base2demo
Seems to be serious serverside problems today 18.01.06. Trying to …
9:33 AM Changeset [1786] by Nicklas Nordborg
Fixed vertical alignment
9:15 AM Ticket #14 (Viewing arrays throws error) closed by Johan Enell
fixed: Changes cast of 'asc desc' to 'ASC DESC'.
9:07 AM Changeset [1785] by Nicklas Nordborg
Fixed vertical alignment of column headers
8:59 AM Changeset [1784] by Nicklas Nordborg
Fixed vertical alignment of messages
8:55 AM Changeset [1783] by Johan Enell
TestJob.test_execute() returns infomation about axit status
8:30 AM Changeset [1782] by Nicklas Nordborg
TestExperiment now cleans up and executes job immediately
8:29 AM Changeset [1781] by Nicklas Nordborg
Reverted NullPlugin to previous state so we can test required parameters

Jan 17, 2006:

5:09 PM Changeset [1780] by Nicklas Nordborg
Fixed bugs in test program related to the updated invokation routines
4:34 PM Changeset [1779] by Nicklas Nordborg
Fixed bugs in test program related to the updated NullPlugin test plugin
1:08 PM Changeset [1778] by Johan Enell
TestAll works again
11:59 AM Changeset [1777] by Nicklas Nordborg
Changed to new design for Software, Hardware, Protocol and Experiment. …

Jan 16, 2006:

4:00 PM Changeset [1776] by Nicklas Nordborg
Fixed validation bug on Edit scan page
3:05 PM Changeset [1775] by Nicklas Nordborg
Changed "View / Scans" to the new page design Made many small changes …
12:51 PM Changeset [1774] by Gregory Vincic
Cleaned up superfluous import statements and unused variables.
12:15 PM Changeset [1773] by Nicklas Nordborg
Several minor changes to import user interface
11:28 AM Changeset [1772] by Nicklas Nordborg
The web import interface should now be more robust and supports …
8:06 AM Changeset [1771] by Nicklas Nordborg
removed update="false" from RawBioAssay.getRawDataType

Jan 13, 2006:

6:16 PM Ticket #14 (Viewing arrays throws error) created by epugh@…
org.jdom.input.JDOMParseException on page …
5:15 PM Changeset [1770] by Gregory Vincic
Errors and commands are now handeled by create_root_bioassayset.jsp …
4:01 PM Changeset [1769] by Nicklas Nordborg
It is now possible to create spot images through the web interface
3:04 PM Changeset [1768] by Gregory Vincic
Intensities are now done with the IntensityCalculatorPlugin
2:47 PM Changeset [1767] by Gregory Vincic
Added IntensityCalculationPlugin test
1:39 PM Changeset [1766] by Nicklas Nordborg
Fixed a bug that caused it to be impossible to create and set …
12:09 PM Changeset [1765] by Nicklas Nordborg
A first version of View / Raw bioassays with the new design is now working
11:42 AM Ticket #13 (Removing experiment while job exists leaves the job waiting indefinitly) created by Gregory Vincic
If you manage to remove an experiment while a waiting job exists the …
11:16 AM Changeset [1764] by Gregory Vincic
Fixed nullPointerException when creating a Job without a …

Jan 12, 2006:

3:12 PM Changeset [1763] by Nicklas Nordborg
Moved the job ID to the ParmeterValues object.
3:00 PM Changeset [1762] by Nicklas Nordborg
The ID of the current job is now available to an executing plugin.
2:51 PM Changeset [1761] by Nicklas Nordborg
Fixed bug in Job that caused it to loose information about which …
2:05 PM Changeset [1760] by Nicklas Nordborg
List page now warns when there are hidden columsn with a filter
12:24 PM Changeset [1759] by Nicklas Nordborg
Plugin configuration now supports item and file parameters
9:36 AM Ticket #12 (Plugin configuration forgets parameter values) created by Nicklas Nordborg
If there is an error in one or more parameters when configuring a …
9:31 AM Changeset [1758] by Nicklas Nordborg
Fixed some of the remaining issues in plugin configuration

Jan 11, 2006:

9:23 PM Tickets #5,​11,​4,​6,​7 batch updated by Jari Häkkinen
Milestone changed
Milestone beta1 deleted
9:23 PM Ticket #1 (column names in flatfile parser) updated by Jari Häkkinen
Milestone changed
9:22 PM Ticket #8 (PrintMapBlockFileImporter) updated by Jari Häkkinen
Milestone changed
9:05 PM Changeset [1757] by Nicklas Nordborg
Replaced the list box with a more fance div-tagged list
3:10 PM Changeset [1756] by Nicklas Nordborg
The start of a new and improved look for configure plugin
2:06 PM Changeset [1755] by Nicklas Nordborg
Error message now doesn't resize a popup window to a smaller size …
1:32 PM Changeset [1754] by Nicklas Nordborg
Plugin configuration can now handle long, float, double, boolean and …

Jan 10, 2006:

8:20 PM Changeset [1753] by Nicklas Nordborg
Updated development status
8:17 PM Changeset [1752] by Nicklas Nordborg
Fixed Internet explorer bug.
8:17 PM Changeset [1751] by Nicklas Nordborg
Bug fix for certain database dialects
3:53 PM Changeset [1750] by Nicklas Nordborg
First step of plugin configuration is now working
9:48 AM Changeset [1749] by Nicklas Nordborg
Manage contexts is now working

Jan 9, 2006:

4:15 PM Changeset [1748] by Gregory Vincic
Added additional requirements specifications
4:12 PM Changeset [1747] by Gregory Vincic
Removing old design and updating status
4:10 PM Changeset [1746] by Gregory Vincic
Added Images and Files section and updated Plates section
4:08 PM Changeset [1745] by Gregory Vincic
Cleaned up comments
4:07 PM Changeset [1744] by Nicklas Nordborg
First prototype for manage contexts
3:38 PM Changeset [1743] by Nicklas Nordborg
PresetSelector should not show "Owned by others" option for …
1:57 PM Changeset [1742] by Nicklas Nordborg
Added prototype analysis
1:17 PM Changeset [1741] by Nicklas Nordborg
Alpha 6 was release 2005-12-21 not 2005-09-09
1:13 PM Changeset [1740] by Nicklas Nordborg
Fixed bug that made it impossible to view other pages but the first in …
1:00 PM Changeset [1739] by Nicklas Nordborg
Added "Edit" images
12:12 PM Changeset [1738] by Nicklas Nordborg
View / Reporters should now be more or less functional
Note: See TracTimeline for information about the timeline view.