Timeline



Feb 3, 2006:

5:16 PM Ticket #78 (pinbase median ratio normalization) created by Johan Enell
Make the median ration normalizer pinbased using the information of blocks
5:13 PM Changeset [1906] by Johan Enell
MedianRatioNormalization? added
4:10 PM Ticket #77 (Well annotations) created by Gregory Vincic
Well annotations should be migrated. Annotation types should be …
4:08 PM Ticket #76 (initdb drops an existing database) created by Nicklas Nordborg
Not good! You data in the database is lost.
4:07 PM Ticket #75 (Remove unused code in migrate package) created by Gregory Vincic
Fix warnings shown in Eclipse for migration classes
4:07 PM Ticket #74 (HibernateUtil doesn't find configuration file if installation path ...) created by Nicklas Nordborg
The space get encoded like %20, which is not interpreted correctly by …
4:05 PM Ticket #73 (Mouse over highlighting the rows in tables) created by Gregory Vincic
Highlight each row the mouse pointer hovers over.
4:05 PM Ticket #72 (DiskUsage.getQuery is missing restriction) created by Nicklas Nordborg
Must only load disk usage for the currently logged in user.
4:05 PM Ticket #71 (java.sql.Date is hardcoded in BasicBatcher) created by Nicklas Nordborg
If we get timestamp columns this code will break.
4:04 PM Ticket #70 (Lazy creation of PreparedStatments in BasicBatcher.) created by Nicklas Nordborg
Now they are always created when the BasicBatcher? object is created.
4:03 PM Ticket #69 (Funny looking line showing when last tab is visible) created by Gregory Vincic
When selecting the last tab in Analysis -> BioAssaySet? view the bottom …
4:03 PM Ticket #68 (Application.BUILD should be updated automatically.) created by Nicklas Nordborg
If possible, this value should be updated when doing an "ant package" …
4:02 PM Ticket #67 (Welcome to BASE page) created by Nicklas Nordborg
Should list some important information like, new messages, news, disk …
4:01 PM Ticket #66 (Missing information in about raw data) created by Nicklas Nordborg
No information about raw data, reporter or well.
4:00 PM Ticket #65 (New list and view page design for Reporter types) created by Nicklas Nordborg
3:59 PM Ticket #64 (Missing information about wells) created by Nicklas Nordborg
No reporter information
3:59 PM Ticket #63 (Clean up javadoc warnings) created by Gregory Vincic
Clean up 'ant javadoc' warnings generated during 'ant javadoc'
3:59 PM Ticket #62 (Missing info about Features) created by Nicklas Nordborg
No information about reporter and wells
3:58 PM Ticket #61 (Array design can't be connected to plate) created by Nicklas Nordborg
Add user interface for doing that.
3:58 PM Ticket #60 (BioAssay data export) created by Gregory Vincic
Exporting BioAssay? data from the table view of BioAssay? data.
3:56 PM Ticket #59 (Correction factor plot) created by Gregory Vincic
Add correction factor plot to the analysis view.
3:55 PM Ticket #58 (Overview plot) created by Gregory Vincic
Add overview plot to the analysis view.
3:55 PM Ticket #57 (Plate mappings view page is not complete) created by Nicklas Nordborg
Missing information about mappigns details
3:54 PM Ticket #56 (Plate view page is not complete) created by Nicklas Nordborg
Missing information about parent plates.
3:53 PM Ticket #55 (Plugin select view generates NullPointerException when plugin ...) created by Gregory Vincic
Plugin select view generates NullPointerException? when plugin …
3:52 PM Ticket #54 (New list and view page design for plugins) created by Nicklas Nordborg
3:52 PM Ticket #53 (Annotate items page is bad) created by Nicklas Nordborg
Make i more like the page for entering paramters for plugins.
3:51 PM Ticket #52 (Auto refresh job view when job not done) created by Gregory Vincic
Job view should be automatically updated every X seconds when the job …
3:50 PM Ticket #51 (File -> New menu is missing several items) created by Gregory Vincic
File->New menu should contain several items that can be created …
3:49 PM Ticket #50 (New list and view page design for Hardware type and Software type) created by Nicklas Nordborg
3:49 PM Ticket #49 (New list and view page design for Annotation types) created by Nicklas Nordborg
3:48 PM Ticket #48 (Add toolbar in BioAssay table view) created by Gregory Vincic
Toolbar containing "columns" button is missing in the BioAssay? table view
3:48 PM Ticket #47 (New list and view page design for Users, Groups and Roles) created by Nicklas Nordborg
3:48 PM Ticket #46 (New list and view page design for News) created by Nicklas Nordborg
3:47 PM Ticket #45 (BioAssay presets/filter settings not working) created by Gregory Vincic
Javascripts that handle presets/filter selections are missing.
3:47 PM Ticket #44 (Clean up the User prefences dialog box) created by Nicklas Nordborg
Remove the unused tab.
3:46 PM Ticket #43 (New icons in web interface) created by Nicklas Nordborg
Most icons used in the web interface are copies of the same image. …
3:46 PM Ticket #42 (Add missing columns in BioAssay table view) created by Gregory Vincic
BioAssay? table view contains only a few hardcoded columns.
3:45 PM Ticket #41 (Dynamically recolor rows in lists) created by Nicklas Nordborg
When moving the mouse over rows in a list page, the current row should …
12:24 PM Changeset [1905] by Johan Enell
corrected inster(query) javadoc
11:09 AM Changeset [1904] by Johan Enell
sqrt added to expressions
11:08 AM Changeset [1903] by Johan Enell
reset() sets firstResult and maxResult to 0
10:39 AM Changeset [1902] by Jari Häkkinen
Added link to GUI test doc.
10:36 AM Changeset [1901] by Jari Häkkinen
Bumped alpha version, added new information.
10:24 AM Changeset [1900] by Gregory Vincic
Fixing javadoc warnings
9:41 AM Ticket #40 (Listing raw data of different raw data types may result in bad HQL) created by Nicklas Nordborg
If you when listing raw data from one raw data type adds a filter or …

Feb 2, 2006:

5:10 PM Changeset [1899] by Jari Häkkinen
Added test procedures (to be) document.
4:08 PM Changeset [1898] by Martin Svensson
Removed CR at end of line.
3:40 PM Changeset [1897] by Nicklas Nordborg
Added SelectedExpression?
2:42 PM Changeset [1896] by Nicklas Nordborg
The option "In current project" in the preset list should not be …
2:35 PM Changeset [1895] by Nicklas Nordborg
Projects now use the new list and view page design
1:51 PM Changeset [1894] by Johan Enell
bugfix onBeforeCommit now sets numSpots
1:17 PM Changeset [1893] by Nicklas Nordborg
View/Sessions? now use the new list page design
12:43 PM Changeset [1892] by Nicklas Nordborg
Updated messages for server restart
11:51 AM Changeset [1891] by Nicklas Nordborg
Fixed NPE in IntensityCalculatorUtil? if no progress reporter was specified.
11:49 AM Changeset [1890] by Nicklas Nordborg
Application.stop now unloads all loaded configuration settings so …
11:18 AM Changeset [1889] by Gregory Vincic
Added TableColumn? class
10:26 AM Changeset [1888] by Nicklas Nordborg
Added Query.count() method
9:40 AM Changeset [1887] by Nicklas Nordborg
ItemContext?.configureQuery now automatically joins required tables
9:22 AM Ticket #38 (Store error information for a job) closed by Nicklas Nordborg
fixed: It was possible to store the stack trace in the status message field.
9:20 AM Changeset [1886] by Nicklas Nordborg
Save stack trace in job's status message if there is an error. Fixed …
8:45 AM Changeset [1885] by Nicklas Nordborg
Messages now use the new list and view page design
8:36 AM Changeset [1884] by Gregory Vincic
Extracted stylesheet

Feb 1, 2006:

4:55 PM Ticket #39 (Handling a string with only blank space in required fields) created by Martin Svensson
When trying to submit a required textfield that just contains blank …
4:09 PM Changeset [1883] by Jari Häkkinen
Clarified default user id and password for BASE 2 web client.
4:02 PM Changeset [1882] by Nicklas Nordborg
ItemContext?.configureQuery can now add sort order and filters, but …
2:20 PM Changeset [1881] by Nicklas Nordborg
Jobs now use the new list and view page design
1:47 PM Ticket #38 (Store error information for a job) created by Nicklas Nordborg
If a job complets with an error, there is only a short status message …
1:08 PM Ticket #37 (New/Edit user - Handling of duplicate login) created by Martin Svensson
There is an nondescriptuve error message when trying to give an user a …
12:11 PM Ticket #12 (Plugin configuration forgets parameter values) closed by Nicklas Nordborg
fixed
12:11 PM Changeset [1880] by Nicklas Nordborg
Fixed bug #12: Plugin configuration forgets parameter values
11:20 AM Changeset [1879] by Nicklas Nordborg
ItemContext? now has a skeleton for configuring a DynamicQuery?
11:10 AM Ticket #36 (Login with a deleted user account) created by Martin Svensson
It is possible to login on an useraccount even if it has been deleted.
11:00 AM Changeset [1878] by Gregory Vincic
Added bioassay table which now shows all intensity rows
10:41 AM Changeset [1877] by Nicklas Nordborg
Export of raw data is now working as well
10:40 AM Changeset [1876] by Nicklas Nordborg
Forgot to include this file in last commit
9:45 AM Changeset [1875] by Nicklas Nordborg
Fixed simple export plugin so the old export function works with the …

Jan 31, 2006:

5:09 PM Changeset [1874] by Gregory Vincic
Fixed toolbar borders when mixing table.css and toolbar.css …
4:02 PM Ticket #21 (ProgressReporter in IntensityCalculatorUtil methods) closed by Nicklas Nordborg
fixed
4:02 PM Changeset [1873] by Nicklas Nordborg
Fixed bug #21: ProgressReporter? in IntensityCalculatorUtil? methods
2:45 PM Changeset [1872] by Nicklas Nordborg
Entire biomaterials section now use the new list and view page design
1:05 PM Ticket #33 (The fields in "Columns " button are sometimes too short, i.e. the text ...) closed by Gregory Vincic
fixed: Text within selectboxes is now visible. The is wider in default mode …
1:05 PM Changeset [1871] by Gregory Vincic
Fixing ticket #33
11:22 AM Changeset [1870] by Gregory Vincic
Added experiment info above the analysis tree. The default job name is …
9:52 AM Ticket #35 (Edit annotations doesn't show all annotation types) closed by Nicklas Nordborg
invalid: It wasn't a bug, it was just a link with wrong arguments (ie. not the …
8:50 AM Ticket #35 (Edit annotations doesn't show all annotation types) created by Nicklas Nordborg
It seems like the form editing annotations doesn't show annotation …
8:26 AM Ticket #34 (Plugin for spot image generation) closed by Nicklas Nordborg
fixed
8:25 AM Changeset [1869] by Nicklas Nordborg
Added SpotImateCreator? plugin

Jan 30, 2006:

11:09 PM TracCgi edited by trac
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11:09 PM TracInterfaceCustomization created by trac
11:09 PM TracUpgrade edited by trac
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11:09 PM TracUnicode edited by trac
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11:09 PM TracAccessibility edited by trac
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11:09 PM TracEnvironment edited by trac
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11:09 PM TracFastCgi edited by trac
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11:09 PM TracGuide edited by trac
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11:09 PM TracImport edited by trac
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11:09 PM TracIni edited by trac
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11:09 PM TracInstall edited by trac
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11:09 PM TracLinks edited by trac
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11:09 PM TracModPython edited by trac
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11:09 PM TracNotification edited by trac
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11:09 PM TracPermissions edited by trac
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11:09 PM TracPlugins edited by trac
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11:09 PM TracQuery edited by trac
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11:09 PM TracReports edited by trac
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11:09 PM TracRoadmap edited by trac
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11:09 PM TracRss edited by trac
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11:09 PM TracStandalone edited by trac
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11:09 PM TracSupport edited by trac
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11:09 PM TracSyntaxColoring edited by trac
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11:09 PM TracTickets edited by trac
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11:09 PM TracTicketsCustomFields edited by trac
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11:09 PM TracTimeline edited by trac
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11:09 PM TracWiki edited by trac
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11:09 PM WikiDeletePage edited by trac
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11:09 PM WikiFormatting edited by trac
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11:09 PM WikiMacros edited by trac
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11:09 PM WikiPageNames edited by trac
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11:09 PM WikiProcessors edited by trac
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11:09 PM WikiRestructuredTextLinks edited by trac
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2:07 PM Ticket #34 (Plugin for spot image generation) created by Nicklas Nordborg
The generation of spot images is now called directly from a JSP page. …
2:02 PM Ticket #32 (A plugin must set a response status ) closed by Nicklas Nordborg
fixed
2:02 PM Changeset [1868] by Nicklas Nordborg
Fixed bug #32: A plugin must set a response status
1:56 PM Changeset [1867] by Gregory Vincic
BioAssaySet? view uses the new tabbed design.
1:43 PM Changeset [1866] by Nicklas Nordborg
BioSources? now use the new list and view page design
1:17 PM Changeset [1865] by Nicklas Nordborg
Fixed column widths for the new list design
1:06 PM Changeset [1864] by Nicklas Nordborg
Labels now use the new list and view page design
12:52 PM Changeset [1863] by Nicklas Nordborg
New view page design for: Protocol, Protocol type, Hardware, Software …
12:00 PM Changeset [1862] by Nicklas Nordborg
Plates now use the new view page design Wells and plate events added …
9:16 AM Changeset [1861] by Nicklas Nordborg
Arra slides, batches and design now use the new view page design
9:15 AM Changeset [1860] by Nicklas Nordborg
Added visible attribute to Tab taglib
9:09 AM Changeset [1859] by Gregory Vincic
Passed the job to the IntensityCalculatorUtil?
8:30 AM Changeset [1858] by Nicklas Nordborg
Hybridizations now use the new view page design

Jan 27, 2006:

2:55 PM Changeset [1857] by Gregory Vincic
Added view_bioassayset.jsp
2:51 PM Changeset [1856] by Nicklas Nordborg
View scan now use the new view page design Added pages for scan images
1:46 PM Changeset [1855] by Nicklas Nordborg
View raw bioassays now use the new view page design
12:05 PM Changeset [1854] by Nicklas Nordborg
View experiment now use the new view page design
11:57 AM Changeset [1853] by Nicklas Nordborg
View reporter now use the new view page design
11:47 AM Changeset [1852] by Nicklas Nordborg
Plate geometries use the new view page design
11:39 AM Changeset [1851] by Nicklas Nordborg
New design for view and list pages Plate types is the first example

Jan 26, 2006:

3:48 PM Changeset [1850] by Nicklas Nordborg
Plate mapping now uses the new list design
3:05 PM Ticket #30 (Preset is not removed from drop-downlist after it had been deleted) closed by Nicklas Nordborg
fixed: Sort of fixed. The preset is not removed from the list, but no …
3:04 PM Changeset [1849] by Nicklas Nordborg
Partly fixed bug #30: Preset is not removed from drop-downlist after …
2:22 PM Changeset [1848] by Nicklas Nordborg
Plate types are ownable and the owner is now displayed and included in …
2:15 PM Changeset [1847] by Nicklas Nordborg
Plates now use the new list design
1:47 PM Changeset [1846] by Martin Svensson
First revision
12:03 PM Changeset [1845] by Nicklas Nordborg
Added log4j.properties.in and removed log4j.properties so everyone can …
11:57 AM Ticket #24 (Adding an administrator name with non-US characters looks strange) closed by Nicklas Nordborg
fixed: Updated base.config.in to not include any characterEncoding setting.
11:56 AM Ticket #3 (Update doesn't create indexes) closed by Nicklas Nordborg
fixed
11:54 AM Changeset [1844] by Nicklas Nordborg
Switched from SchemaUpdate? to SchemaExport? in createStaticTables so …
11:53 AM Ticket #33 (The fields in "Columns " button are sometimes too short, i.e. the text ...) created by Jari Häkkinen
When I'm editing "Set column order and visiblity" in the "edit raw …
11:51 AM Ticket #22 (Server configuration. Setting unlimited with G or Gb does not change ...) closed by Nicklas Nordborg
fixed: i) Fixed. Tried to stora too large value in an int. Changed to long.
11:08 AM Ticket #32 (A plugin must set a response status ) created by Nicklas Nordborg
If a plugin doesn't set a respose status, null is returned to the web …
10:36 AM Ticket #31 (Changing list columns - list of visible columns becomes empty) created by Martin Svensson
Webpage: Experiments Step1.Select 'Default Columns' in the drop …
8:40 AM Ticket #18 (BioMaterialEvent.addSource and BioMaterialEvent.removeSource doesn't work) closed by Nicklas Nordborg
fixed
8:37 AM Changeset [1843] by Nicklas Nordborg
Fixed bug #18: BioMaterialEvent?.addSource and …
8:36 AM Changeset [1842] by Nicklas Nordborg
vertical align of td and th removed since it didn't work as intended
12:35 AM Changeset [1841] by Jari Häkkinen
Fixed latex to html translation.

Jan 25, 2006:

4:57 PM Changeset [1840] by Nicklas Nordborg
Fixed most of bug #22: Server configuration. Setting unlimited with G …
4:12 PM Changeset [1839] by Nicklas Nordborg
Protocol types now use the new list design
4:12 PM Changeset [1838] by Nicklas Nordborg
Ordinal now gets a default value of 1, instead of 0 which is invalid.
4:04 PM Changeset [1837] by Nicklas Nordborg
System items can no longer be deleted.
2:35 PM Ticket #30 (Preset is not removed from drop-downlist after it had been deleted) created by Martin Svensson
Experiments->Mangage(preset)->Delete a preset. The preset is not …
1:12 PM Changeset [1836] by Gregory Vincic
Added date column and moved 'Run Plugin' button to the BioAssaySet? view
11:58 AM Changeset [1835] by Nicklas Nordborg
Removed meta-tag setting the character set. It doesn't work and was …
11:48 AM Changeset [1834] by Nicklas Nordborg
Deleted unused jsp page
11:46 AM Changeset [1833] by Nicklas Nordborg
Plate types and Plate event types now use the new list design
11:45 AM Changeset [1832] by Nicklas Nordborg
Added 'delete' method to RemovableUtil?
11:07 AM Changeset [1831] by Gregory Vincic
If page taglib parameter title is null no title is written. This way …
11:05 AM Changeset [1830] by Gregory Vincic
Added LIMIT values to user query
10:21 AM Changeset [1829] by Gregory Vincic
Linked title breadcrumbs to their views
9:55 AM Changeset [1828] by Gregory Vincic
Implemented restore functionality for bioassaysets in the analysis view
9:45 AM Ticket #29 (Filtering News on dates) created by Martin Svensson
Filter News on Start-, News- or End date There is nothing that …
8:25 AM Changeset [1827] by Nicklas Nordborg
Plate geometry now uses the new list design
7:47 AM Changeset [1826] by Nicklas Nordborg
Fixed bug #17: ItemContext?.configureQuery doesn't LEFT JOIN properties …
7:46 AM Ticket #17 (ItemContext.configureQuery doesn't LEFT JOIN properties with more than ...) closed by Nicklas Nordborg
fixed
7:41 AM Changeset [1825] by Nicklas Nordborg
Changed "Scan" to "Hybridization"

Jan 24, 2006:

4:45 PM Ticket #28 (Returning to mainpage from viewing all the news) created by Martin Svensson
It could be useful to have a way to get back to mainpage from the …
4:08 PM Changeset [1824] by Nicklas Nordborg
ItemContext? now LEFT JOIN:s filters if it is an association.
3:40 PM Ticket #27 (Analyze button in the experiment view) created by Gregory Vincic
Add an "Analyze" button to the view experiment toolbar.
3:31 PM Changeset [1823] by Gregory Vincic
Added Run Plugin button which uses the default plugin selection view
2:39 PM Changeset [1822] by Jari Häkkinen
First draft of Server configuration test.
2:38 PM Ticket #26 (Cannot navigate to page 1 on list pages) closed by Nicklas Nordborg
fixed
2:38 PM Changeset [1821] by Nicklas Nordborg
Fixed bug #26: Cannot navigate to page 1 on list pages
2:26 PM Changeset [1820] by Nicklas Nordborg
Array designs and features now use the new list design
1:45 PM Changeset [1819] by Gregory Vincic
Indexed rows and fixed starting level of tree
1:43 PM Changeset [1818] by Gregory Vincic
Indexed rows and fixed starting level of tree
1:25 PM Ticket #26 (Cannot navigate to page 1 on list pages) created by Nicklas Nordborg
If you have navigated to another page than page 1 it is not possible …
1:24 PM Ticket #25 (Changing information on how to get an account does not propagete to ...) created by Jari Häkkinen
Read this tickets short summary. Do the change, logout, try to click …
1:16 PM Ticket #24 (Adding an administrator name with non-US characters looks strange) created by Jari Häkkinen
Try adding "Jari Häkkinen" to the Administrator name in Server setting …
1:13 PM Ticket #23 (Apply button in popup windows?) created by Jari Häkkinen
It would be nice with an apply button in popups that pushes changes …
1:00 PM Ticket #22 (Server configuration. Setting unlimited with G or Gb does not change ...) created by Jari Häkkinen
i) Setting unlimited with G or Gb does not change value when saved. …
12:37 PM Changeset [1817] by Gregory Vincic
Bioassaysets are now represented by a redish folder, should probably …
11:32 AM Ticket #21 (ProgressReporter in IntensityCalculatorUtil methods) created by Nicklas Nordborg
Add a ProgressReporter? parameter to …
11:32 AM Changeset [1816] by Gregory Vincic
Renamed treeline images to lowercase
11:30 AM Changeset [1815] by Gregory Vincic
Renamed treeLine to treeline
11:22 AM Changeset [1814] by Gregory Vincic
Added dynamic analysis tree in the analysis view.
11:15 AM Changeset [1813] by Nicklas Nordborg
Changed "Array batch" to new list design
10:30 AM Changeset [1812] by Nicklas Nordborg
Changed "Array slides" to the new design
9:06 AM Changeset [1811] by Nicklas Nordborg
Display annotations on "view item" page
8:46 AM Ticket #20 (Display and link to associated item from view page) created by Nicklas Nordborg
When viewing a single item which has associations to other items, only …
8:43 AM Ticket #19 (Show/hide option for various section on a "view item" page) created by Nicklas Nordborg
When viewing a single item, for example a hybridization, it should be …
8:16 AM Ticket #18 (BioMaterialEvent.addSource and BioMaterialEvent.removeSource doesn't work) created by Nicklas Nordborg
If the "usedQuantity" parameter has been set to null for a source …
7:56 AM Changeset [1810] by Nicklas Nordborg
Fixed NPE in Base.getAndSetCurrentContext if no "rowsperpage" …

Jan 23, 2006:

3:59 PM Changeset [1809] by Nicklas Nordborg
Fixed problem with lists displaying all items if a negative …
3:42 PM Changeset [1808] by Nicklas Nordborg
View hybridization page now lists labeled extracts
2:17 PM Changeset [1807] by Nicklas Nordborg
Added "Today" button to calendar popup.
2:10 PM Changeset [1806] by Nicklas Nordborg
Hybridizations now use the new list design
1:03 PM Changeset [1805] by Nicklas Nordborg
Names of days now have three letters
12:16 PM Changeset [1804] by Nicklas Nordborg
Removed debug alert message
11:57 AM Ticket #17 (ItemContext.configureQuery doesn't LEFT JOIN properties with more than ...) created by Nicklas Nordborg
This results in queries which doesn't return any items with null …
11:33 AM Changeset [1803] by Nicklas Nordborg
The new file manager has now fully replace the old one.
8:08 AM Changeset [1802] by Nicklas Nordborg
Fixed vertical alignment of tables

Jan 21, 2006:

1:08 PM Changeset [1801] by Nicklas Nordborg
Removed lots of unused imports.

Jan 20, 2006:

4:08 PM Changeset [1800] by Nicklas Nordborg
Fixed some problems with loading proxies and many-to-any mapping in …
2:42 PM Changeset [1799] by Nicklas Nordborg
TestSpotImages? is now displaying spot images (was commented out since …
2:32 PM Changeset [1798] by Nicklas Nordborg
The file manager is now working as a standalone part.
1:32 PM Changeset [1797] by Gregory Vincic
Fixed bug where roles where not assigned due to a closed DbControl?
11:12 AM Ticket #13 (Removing experiment while job exists leaves the job waiting indefinitly) closed by Nicklas Nordborg
fixed: Fixed. The error is now reported in the same way as any other job …
11:11 AM Ticket #15 (DemoServer not working even for basic testing) closed by Nicklas Nordborg
duplicate: Fixed some time ago. Shouldn't be a problem once the demo server is …
11:06 AM Changeset [1796] by Nicklas Nordborg
Internal job queue no longer chokes on missing item parameters. …
10:38 AM Ticket #16 (Configurable link to Report a bug) created by Nicklas Nordborg
The help meny has an item "Reporter a bug" which leads to a …

Jan 19, 2006:

8:48 PM Changeset [1795] by Nicklas Nordborg
Removed lots of unused imports.
2:54 PM Changeset [1794] by Nicklas Nordborg
Added File manager with the new list design. The old is still …
2:26 PM Changeset [1793] by Johan Enell
PrintMapFlatFileImporter? version1.0
12:11 PM Changeset [1792] by Jari Häkkinen
Inital infrastructure for test documents.

Jan 18, 2006:

5:33 PM Changeset [1791] by Gregory Vincic
Plugin test updated. Analysis gui updated. Changed log4j properties …
4:50 PM Changeset [1790] by Johan Enell
Handles sections correct
3:56 PM Changeset [1789] by Nicklas Nordborg
The current context can now be passed on to plugins when configuring …
2:23 PM Changeset [1788] by Nicklas Nordborg
Changed login page so that the encrypted password is sent in a hidden …
2:04 PM Changeset [1787] by Nicklas Nordborg
Plugins can now use customized JSP pages. Test case with NullPlugin?.
1:30 PM Ticket #15 (DemoServer not working even for basic testing) created by base2demo
Seems to be serious serverside problems today 18.01.06. Trying to …
9:33 AM Changeset [1786] by Nicklas Nordborg
Fixed vertical alignment
9:15 AM Ticket #14 (Viewing arrays throws error) closed by Johan Enell
fixed: Changes cast of 'asc desc' to 'ASC DESC'.
9:07 AM Changeset [1785] by Nicklas Nordborg
Fixed vertical alignment of column headers
8:59 AM Changeset [1784] by Nicklas Nordborg
Fixed vertical alignment of messages
8:55 AM Changeset [1783] by Johan Enell
TestJob?.test_execute() returns infomation about axit status
8:30 AM Changeset [1782] by Nicklas Nordborg
TestExperiment? now cleans up and executes job immediately
8:29 AM Changeset [1781] by Nicklas Nordborg
Reverted NullPlugin? to previous state so we can test required parameters

Jan 17, 2006:

5:09 PM Changeset [1780] by Nicklas Nordborg
Fixed bugs in test program related to the updated invokation routines
4:34 PM Changeset [1779] by Nicklas Nordborg
Fixed bugs in test program related to the updated NullPlugin? test plugin
1:08 PM Changeset [1778] by Johan Enell
TestAll? works again
11:59 AM Changeset [1777] by Nicklas Nordborg
Changed to new design for Software, Hardware, Protocol and Experiment. …

Jan 16, 2006:

4:00 PM Changeset [1776] by Nicklas Nordborg
Fixed validation bug on Edit scan page
3:05 PM Changeset [1775] by Nicklas Nordborg
Changed "View / Scans" to the new page design Made many small changes …
12:51 PM Changeset [1774] by Gregory Vincic
Cleaned up superfluous import statements and unused variables.
12:15 PM Changeset [1773] by Nicklas Nordborg
Several minor changes to import user interface
11:28 AM Changeset [1772] by Nicklas Nordborg
The web import interface should now be more robust and supports …
8:06 AM Changeset [1771] by Nicklas Nordborg
removed update="false" from RawBioAssay?.getRawDataType

Jan 13, 2006:

6:16 PM Ticket #14 (Viewing arrays throws error) created by epugh@…
org.jdom.input.JDOMParseException on page …
5:15 PM Changeset [1770] by Gregory Vincic
Errors and commands are now handeled by create_root_bioassayset.jsp …
4:01 PM Changeset [1769] by Nicklas Nordborg
It is now possible to create spot images through the web interface
3:04 PM Changeset [1768] by Gregory Vincic
Intensities are now done with the IntensityCalculatorPlugin?
2:47 PM Changeset [1767] by Gregory Vincic
Added IntensityCalculationPlugin? test
1:39 PM Changeset [1766] by Nicklas Nordborg
Fixed a bug that caused it to be impossible to create and set …
12:09 PM Changeset [1765] by Nicklas Nordborg
A first version of View / Raw bioassays with the new design is now working
11:42 AM Ticket #13 (Removing experiment while job exists leaves the job waiting indefinitly) created by Gregory Vincic
If you manage to remove an experiment while a waiting job exists the …
11:16 AM Changeset [1764] by Gregory Vincic
Fixed nullPointerException when creating a Job without a …

Jan 12, 2006:

3:12 PM Changeset [1763] by Nicklas Nordborg
Moved the job ID to the ParmeterValues? object.
3:00 PM Changeset [1762] by Nicklas Nordborg
The ID of the current job is now available to an executing plugin.
2:51 PM Changeset [1761] by Nicklas Nordborg
Fixed bug in Job that caused it to loose information about which …
2:05 PM Changeset [1760] by Nicklas Nordborg
List page now warns when there are hidden columsn with a filter
12:24 PM Changeset [1759] by Nicklas Nordborg
Plugin configuration now supports item and file parameters
9:36 AM Ticket #12 (Plugin configuration forgets parameter values) created by Nicklas Nordborg
If there is an error in one or more parameters when configuring a …
9:31 AM Changeset [1758] by Nicklas Nordborg
Fixed some of the remaining issues in plugin configuration

Jan 11, 2006:

9:05 PM Changeset [1757] by Nicklas Nordborg
Replaced the list box with a more fance div-tagged list
3:10 PM Changeset [1756] by Nicklas Nordborg
The start of a new and improved look for configure plugin
2:06 PM Changeset [1755] by Nicklas Nordborg
Error message now doesn't resize a popup window to a smaller size …
1:32 PM Changeset [1754] by Nicklas Nordborg
Plugin configuration can now handle long, float, double, boolean and …

Jan 10, 2006:

8:20 PM Changeset [1753] by Nicklas Nordborg
Updated development status
8:17 PM Changeset [1752] by Nicklas Nordborg
Fixed Internet explorer bug.
8:17 PM Changeset [1751] by Nicklas Nordborg
Bug fix for certain database dialects
3:53 PM Changeset [1750] by Nicklas Nordborg
First step of plugin configuration is now working
9:48 AM Changeset [1749] by Nicklas Nordborg
Manage contexts is now working

Jan 9, 2006:

4:15 PM Changeset [1748] by Gregory Vincic
Added additional requirements specifications
4:12 PM Changeset [1747] by Gregory Vincic
Removing old design and updating status
4:10 PM Changeset [1746] by Gregory Vincic
Added Images and Files section and updated Plates section
4:08 PM Changeset [1745] by Gregory Vincic
Cleaned up comments
4:07 PM Changeset [1744] by Nicklas Nordborg
First prototype for manage contexts
3:38 PM Changeset [1743] by Nicklas Nordborg
PresetSelector? should not show "Owned by others" option for …
1:57 PM Changeset [1742] by Nicklas Nordborg
Added prototype analysis
1:17 PM Changeset [1741] by Nicklas Nordborg
Alpha 6 was release 2005-12-21 not 2005-09-09
1:13 PM Changeset [1740] by Nicklas Nordborg
Fixed bug that made it impossible to view other pages but the first in …
1:00 PM Changeset [1739] by Nicklas Nordborg
Added "Edit" images
12:12 PM Changeset [1738] by Nicklas Nordborg
View / Reporters should now be more or less functional

Jan 4, 2006:

10:16 AM Changeset [1737] by Gregory Vincic
Added a sequence diagram describing a general transfer
Note: See TracTimeline for information about the timeline view.