Timeline



Jan 24, 2006:

4:45 PM Ticket #28 (Returning to mainpage from viewing all the news) created by Martin Svensson
It could be useful to have a way to get back to mainpage from the …
4:08 PM Changeset [1824] by Nicklas Nordborg
ItemContext now LEFT JOIN:s filters if it is an association.
3:41 PM Ticket #27 (Analyze button in the experiment view) updated by Gregory Vincic
Type changed
3:40 PM Ticket #27 (Analyze button in the experiment view) created by Gregory Vincic
Add an "Analyze" button to the view experiment toolbar.
3:31 PM Changeset [1823] by Gregory Vincic
Added Run Plugin button which uses the default plugin selection view
2:39 PM Changeset [1822] by Jari Häkkinen
First draft of Server configuration test.
2:38 PM Ticket #26 (Cannot navigate to page 1 on list pages) closed by Nicklas Nordborg
fixed
2:38 PM Changeset [1821] by Nicklas Nordborg
Fixed bug #26: Cannot navigate to page 1 on list pages
2:26 PM Changeset [1820] by Nicklas Nordborg
Array designs and features now use the new list design
1:45 PM Changeset [1819] by Gregory Vincic
Indexed rows and fixed starting level of tree
1:43 PM Changeset [1818] by Gregory Vincic
Indexed rows and fixed starting level of tree
1:28 PM Ticket #25 (Changing information on how to get an account does not propagete to ...) updated by Jari Häkkinen
Description changed
1:25 PM Ticket #26 (Cannot navigate to page 1 on list pages) created by Nicklas Nordborg
If you have navigated to another page than page 1 it is not possible …
1:24 PM Ticket #25 (Changing information on how to get an account does not propagete to ...) created by Jari Häkkinen
Read this tickets short summary. Do the change, logout, try to click …
1:16 PM Ticket #24 (Adding an administrator name with non-US characters looks strange) created by Jari Häkkinen
Try adding "Jari Häkkinen" to the Administrator name in Server setting …
1:13 PM Ticket #23 (Apply button in popup windows?) created by Jari Häkkinen
It would be nice with an apply button in popups that pushes changes …
1:00 PM Ticket #22 (Server configuration. Setting unlimited with G or Gb does not change ...) created by Jari Häkkinen
i) Setting unlimited with G or Gb does not change value when saved. …
12:37 PM Changeset [1817] by Gregory Vincic
Bioassaysets are now represented by a redish folder, should probably …
11:32 AM Ticket #21 (ProgressReporter in IntensityCalculatorUtil methods) created by Nicklas Nordborg
Add a ProgressReporter parameter to …
11:32 AM Changeset [1816] by Gregory Vincic
Renamed treeline images to lowercase
11:30 AM Changeset [1815] by Gregory Vincic
Renamed treeLine to treeline
11:22 AM Changeset [1814] by Gregory Vincic
Added dynamic analysis tree in the analysis view.
11:15 AM Changeset [1813] by Nicklas Nordborg
Changed "Array batch" to new list design
10:30 AM Changeset [1812] by Nicklas Nordborg
Changed "Array slides" to the new design
9:06 AM Changeset [1811] by Nicklas Nordborg
Display annotations on "view item" page
8:46 AM Ticket #20 (Display and link to associated item from view page) created by Nicklas Nordborg
When viewing a single item which has associations to other items, only …
8:43 AM Ticket #19 (Show/hide option for various section on a "view item" page) created by Nicklas Nordborg
When viewing a single item, for example a hybridization, it should be …
8:16 AM Ticket #18 (BioMaterialEvent.addSource and BioMaterialEvent.removeSource doesn't work) created by Nicklas Nordborg
If the "usedQuantity" parameter has been set to null for a source …
7:56 AM Changeset [1810] by Nicklas Nordborg
Fixed NPE in Base.getAndSetCurrentContext if no "rowsperpage" …

Jan 23, 2006:

3:59 PM Changeset [1809] by Nicklas Nordborg
Fixed problem with lists displaying all items if a negative …
3:42 PM Changeset [1808] by Nicklas Nordborg
View hybridization page now lists labeled extracts
2:17 PM Changeset [1807] by Nicklas Nordborg
Added "Today" button to calendar popup.
2:10 PM Changeset [1806] by Nicklas Nordborg
Hybridizations now use the new list design
1:20 PM Ticket #17 (ItemContext.configureQuery doesn't LEFT JOIN properties with more than ...) updated by Nicklas Nordborg
Status, Description changed
The same if true if we have a filter on that property. It will not …
1:03 PM Changeset [1805] by Nicklas Nordborg
Names of days now have three letters
12:16 PM Changeset [1804] by Nicklas Nordborg
Removed debug alert message
11:57 AM Ticket #17 (ItemContext.configureQuery doesn't LEFT JOIN properties with more than ...) created by Nicklas Nordborg
This results in queries which doesn't return any items with null …
11:33 AM Changeset [1803] by Nicklas Nordborg
The new file manager has now fully replace the old one.
8:08 AM Changeset [1802] by Nicklas Nordborg
Fixed vertical alignment of tables

Jan 21, 2006:

1:08 PM Changeset [1801] by Nicklas Nordborg
Removed lots of unused imports.

Jan 20, 2006:

4:08 PM Changeset [1800] by Nicklas Nordborg
Fixed some problems with loading proxies and many-to-any mapping in …
2:42 PM Changeset [1799] by Nicklas Nordborg
TestSpotImages is now displaying spot images (was commented out since …
2:32 PM Changeset [1798] by Nicklas Nordborg
The file manager is now working as a standalone part.
1:32 PM Changeset [1797] by Gregory Vincic
Fixed bug where roles where not assigned due to a closed DbControl
11:12 AM Ticket #13 (Removing experiment while job exists leaves the job waiting indefinitly) closed by Nicklas Nordborg
fixed: Fixed. The error is now reported in the same way as any other job …
11:11 AM Ticket #15 (DemoServer not working even for basic testing) closed by Nicklas Nordborg
duplicate: Fixed some time ago. Shouldn't be a problem once the demo server is …
11:06 AM Changeset [1796] by Nicklas Nordborg
Internal job queue no longer chokes on missing item parameters. …
10:38 AM Ticket #16 (Configurable link to Report a bug) created by Nicklas Nordborg
The help meny has an item "Reporter a bug" which leads to a …

Jan 19, 2006:

8:48 PM Changeset [1795] by Nicklas Nordborg
Removed lots of unused imports.
2:54 PM Changeset [1794] by Nicklas Nordborg
Added File manager with the new list design. The old is still …
2:26 PM Changeset [1793] by Johan Enell
PrintMapFlatFileImporter version1.0
12:11 PM Changeset [1792] by Jari Häkkinen
Inital infrastructure for test documents.

Jan 18, 2006:

5:33 PM Changeset [1791] by Gregory Vincic
Plugin test updated. Analysis gui updated. Changed log4j properties …
4:50 PM Changeset [1790] by Johan Enell
Handles sections correct
3:56 PM Changeset [1789] by Nicklas Nordborg
The current context can now be passed on to plugins when configuring …
2:23 PM Changeset [1788] by Nicklas Nordborg
Changed login page so that the encrypted password is sent in a hidden …
2:04 PM Changeset [1787] by Nicklas Nordborg
Plugins can now use customized JSP pages. Test case with NullPlugin.
1:30 PM Ticket #15 (DemoServer not working even for basic testing) created by base2demo
Seems to be serious serverside problems today 18.01.06. Trying to …
9:33 AM Changeset [1786] by Nicklas Nordborg
Fixed vertical alignment
9:15 AM Ticket #14 (Viewing arrays throws error) closed by Johan Enell
fixed: Changes cast of 'asc desc' to 'ASC DESC'.
9:07 AM Changeset [1785] by Nicklas Nordborg
Fixed vertical alignment of column headers
8:59 AM Changeset [1784] by Nicklas Nordborg
Fixed vertical alignment of messages
8:55 AM Changeset [1783] by Johan Enell
TestJob.test_execute() returns infomation about axit status
8:30 AM Changeset [1782] by Nicklas Nordborg
TestExperiment now cleans up and executes job immediately
8:29 AM Changeset [1781] by Nicklas Nordborg
Reverted NullPlugin to previous state so we can test required parameters

Jan 17, 2006:

5:09 PM Changeset [1780] by Nicklas Nordborg
Fixed bugs in test program related to the updated invokation routines
4:34 PM Changeset [1779] by Nicklas Nordborg
Fixed bugs in test program related to the updated NullPlugin test plugin
1:08 PM Changeset [1778] by Johan Enell
TestAll works again
11:59 AM Changeset [1777] by Nicklas Nordborg
Changed to new design for Software, Hardware, Protocol and Experiment. …

Jan 16, 2006:

4:00 PM Changeset [1776] by Nicklas Nordborg
Fixed validation bug on Edit scan page
3:05 PM Changeset [1775] by Nicklas Nordborg
Changed "View / Scans" to the new page design Made many small changes …
12:51 PM Changeset [1774] by Gregory Vincic
Cleaned up superfluous import statements and unused variables.
12:15 PM Changeset [1773] by Nicklas Nordborg
Several minor changes to import user interface
11:28 AM Changeset [1772] by Nicklas Nordborg
The web import interface should now be more robust and supports …
8:06 AM Changeset [1771] by Nicklas Nordborg
removed update="false" from RawBioAssay.getRawDataType

Jan 13, 2006:

6:16 PM Ticket #14 (Viewing arrays throws error) created by epugh@…
org.jdom.input.JDOMParseException on page …
5:15 PM Changeset [1770] by Gregory Vincic
Errors and commands are now handeled by create_root_bioassayset.jsp …
4:01 PM Changeset [1769] by Nicklas Nordborg
It is now possible to create spot images through the web interface
3:04 PM Changeset [1768] by Gregory Vincic
Intensities are now done with the IntensityCalculatorPlugin
2:47 PM Changeset [1767] by Gregory Vincic
Added IntensityCalculationPlugin test
1:39 PM Changeset [1766] by Nicklas Nordborg
Fixed a bug that caused it to be impossible to create and set …
12:09 PM Changeset [1765] by Nicklas Nordborg
A first version of View / Raw bioassays with the new design is now working
11:42 AM Ticket #13 (Removing experiment while job exists leaves the job waiting indefinitly) created by Gregory Vincic
If you manage to remove an experiment while a waiting job exists the …
11:16 AM Changeset [1764] by Gregory Vincic
Fixed nullPointerException when creating a Job without a …

Jan 12, 2006:

3:12 PM Changeset [1763] by Nicklas Nordborg
Moved the job ID to the ParmeterValues object.
3:00 PM Changeset [1762] by Nicklas Nordborg
The ID of the current job is now available to an executing plugin.
2:51 PM Changeset [1761] by Nicklas Nordborg
Fixed bug in Job that caused it to loose information about which …
2:05 PM Changeset [1760] by Nicklas Nordborg
List page now warns when there are hidden columsn with a filter
12:24 PM Changeset [1759] by Nicklas Nordborg
Plugin configuration now supports item and file parameters
9:36 AM Ticket #12 (Plugin configuration forgets parameter values) created by Nicklas Nordborg
If there is an error in one or more parameters when configuring a …
9:31 AM Changeset [1758] by Nicklas Nordborg
Fixed some of the remaining issues in plugin configuration

Jan 11, 2006:

9:23 PM Tickets #5,​11,​4,​6,​7 batch updated by Jari Häkkinen
Milestone changed
Milestone beta1 deleted
9:23 PM Ticket #1 (column names in flatfile parser) updated by Jari Häkkinen
Milestone changed
9:22 PM Ticket #8 (PrintMapBlockFileImporter) updated by Jari Häkkinen
Milestone changed
9:05 PM Changeset [1757] by Nicklas Nordborg
Replaced the list box with a more fance div-tagged list
3:10 PM Changeset [1756] by Nicklas Nordborg
The start of a new and improved look for configure plugin
2:06 PM Changeset [1755] by Nicklas Nordborg
Error message now doesn't resize a popup window to a smaller size …
1:32 PM Changeset [1754] by Nicklas Nordborg
Plugin configuration can now handle long, float, double, boolean and …

Jan 10, 2006:

8:20 PM Changeset [1753] by Nicklas Nordborg
Updated development status
8:17 PM Changeset [1752] by Nicklas Nordborg
Fixed Internet explorer bug.
8:17 PM Changeset [1751] by Nicklas Nordborg
Bug fix for certain database dialects
3:53 PM Changeset [1750] by Nicklas Nordborg
First step of plugin configuration is now working
9:48 AM Changeset [1749] by Nicklas Nordborg
Manage contexts is now working

Jan 9, 2006:

4:15 PM Changeset [1748] by Gregory Vincic
Added additional requirements specifications
4:12 PM Changeset [1747] by Gregory Vincic
Removing old design and updating status
4:10 PM Changeset [1746] by Gregory Vincic
Added Images and Files section and updated Plates section
4:08 PM Changeset [1745] by Gregory Vincic
Cleaned up comments
4:07 PM Changeset [1744] by Nicklas Nordborg
First prototype for manage contexts
3:38 PM Changeset [1743] by Nicklas Nordborg
PresetSelector should not show "Owned by others" option for …
1:57 PM Changeset [1742] by Nicklas Nordborg
Added prototype analysis
1:17 PM Changeset [1741] by Nicklas Nordborg
Alpha 6 was release 2005-12-21 not 2005-09-09
1:13 PM Changeset [1740] by Nicklas Nordborg
Fixed bug that made it impossible to view other pages but the first in …
1:00 PM Changeset [1739] by Nicklas Nordborg
Added "Edit" images
12:12 PM Changeset [1738] by Nicklas Nordborg
View / Reporters should now be more or less functional

Jan 4, 2006:

10:16 AM Changeset [1737] by Gregory Vincic
Added a sequence diagram describing a general transfer

Jan 3, 2006:

4:59 PM Changeset [1736] by Gregory Vincic
Added operations to most top classes
4:24 PM Changeset [1735] by Gregory Vincic
Initial revision of umbrello design

Dec 26, 2005:

1:33 AM Changeset [1734] by Jari Häkkinen
Fixed many warnings from javadoc. Added TODO comments all over with …
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