Timeline
Nov 23, 2005:
- 8:31 PM Changeset [1657] by
- Updated development status
- 4:06 PM Changeset [1656] by
- Added Wells admin
- 2:58 PM Changeset [1655] by
- Added plate events admin
- 2:55 PM Changeset [1654] by
- Added HQL right join and support for WITH restriction in join clause
- 9:41 AM Changeset [1653] by
- Added plate event types administration
- 8:54 AM Ticket #11 (Migration: AnnotationTransfer InvalidDataException not caught) closed by
- fixed: Fixed. There is a problem concerning that Base 1 allows annotations …
Nov 22, 2005:
- 4:04 PM Changeset [1652] by
- Added Array LIMS / plates
- 3:00 PM Changeset [1651] by
- Removed some logging
- 2:59 PM Changeset [1650] by
- Fixed bad UTF-8 characters
- 2:36 PM Changeset [1649] by
- Fixed bug in ReporterFlatFileImporter (Not converting values to …
- 1:37 PM Changeset [1648] by
- Fixed bug with unavailable ArraySlides and removed some logging
- 9:41 AM Changeset [1647] by
- Plugin configuration
Nov 21, 2005:
- 2:44 PM Changeset [1646] by
- Added plugin configuration admin
- 2:26 PM Changeset [1645] by
- Setting different SELECT limit if QUICK_TRANSFER = yes
- 2:19 PM Changeset [1644] by
- Removed calls to depraceted methods and fixed invalid use of null in …
- 10:53 AM Changeset [1643] by
- Catching NumberFormatException
- 10:34 AM Changeset [1642] by
- Removed some logging
- 9:50 AM Ticket #11 (Migration: AnnotationTransfer InvalidDataException not caught) created by
- The setValue methods on lines 143 through 156 in …
- 9:45 AM Changeset [1641] by
- Annotations generating InvalidDataException are not migrated
- 8:17 AM Changeset [1640] by
- Abstract flat file importer now checks for thread interruption
Nov 18, 2005:
- 8:04 PM Changeset [1639] by
- Set ID and Date keyword
- 8:00 PM Changeset [1638] by
- Updated development status
- 3:24 PM Changeset [1637] by
- Fixed bug with equal filenames and removed some logging
- 2:54 PM Changeset [1636] by
- Jobs are not shareable, added server to view job
- 2:42 PM Changeset [1635] by
- Updated some javadoc
- 2:00 PM Changeset [1634] by
- Internal job queue is now functional
- 11:11 AM Changeset [1633] by
- Logs migration ending
- 10:29 AM Changeset [1632] by
- Added methods to handle String to int conversions
- 9:47 AM Changeset [1631] by
- Modified SessionControl.impersonateLogin() to create a new …
- 9:33 AM Changeset [1630] by
- Fixed logging
Nov 17, 2005:
- 1:36 PM Changeset [1629] by
- Added first version of internal job queue (not working)
- 1:21 PM Changeset [1628] by
- added some svn properties
- 1:05 PM Changeset [1627] by
- section tested
- 10:56 AM Changeset [1626] by
- Added two new columns to job: server and estimated execution time. …
- 9:34 AM Changeset [1625] by
- Changed error output to info
- 9:05 AM Changeset [1624] by
- Added Log4j logger to migration since it didn't compile now that the …
Nov 16, 2005:
- 4:07 PM Changeset [1623] by
- Removed Application.log methods
- 2:55 PM Changeset [1622] by
- Plugins now leave better status reporters to jobs and messages.
- 1:32 PM Changeset [1621] by
- Fixed bugs in configure columns and export
- 1:01 PM Changeset [1620] by
- Added submit_jobs.jsp
- 12:57 PM Changeset [1619] by
- Added View/Jobs
- 11:23 AM Changeset [1618] by
- Better file selection when importing File upload is now possible when …
- 10:52 AM Changeset [1617] by
- Added some functions for better auto-detection of file formats
Nov 15, 2005:
- 4:53 PM Changeset [1616] by
- section added to flatfileparser
- 4:10 PM Changeset [1615] by
- Fixed bug in property value if no DbControl was set
- 4:04 PM Changeset [1614] by
- Fixed bug in column selection
- 3:52 PM Changeset [1613] by
- First version of import reporters is now working
- 12:27 PM Changeset [1612] by
- Started to implement import function
- 9:41 AM Changeset [1611] by
- Added import_disabled.gif
- 9:22 AM Changeset [1610] by
- Fixed classpath to log4j
- 9:21 AM Changeset [1609] by
- Generic export can now handle data layer items
- 8:56 AM Changeset [1608] by
- Fixed several bugs in Metadata to get View/Reporters to work
Nov 14, 2005:
- 8:02 PM Changeset [1607] by
- Updated development status
- 4:07 PM Changeset [1606] by
- Added View/Reporters
- 2:54 PM Changeset [1605] by
- ExtendedProperty.getTitle now returns the title instead of the name
- 11:27 AM Ticket #10 (Analysis: Hierarchical clustering) created by
- Hierarchical clustering, bottom-up. The two closest points are merged …
- 11:08 AM Ticket #9 (Normalization: Lowess) created by
- A plug-in for lowess normalization. For more info on LOWESS: …
- 10:55 AM Ticket #8 (PrintMapBlockFileImporter) updated by
-
Status changed
- 10:55 AM Ticket #8 (PrintMapBlockFileImporter) created by
- A importer plugin-in for print maps.
- 10:50 AM Ticket #7 (ReporterMapFlatFileImporter) closed by
- fixed
- 10:50 AM Ticket #7 (ReporterMapFlatFileImporter) created by
- A importer plug-in for reporter maps.
- 10:48 AM Ticket #6 (ReporterFlatFileImporter) closed by
- fixed
- 10:48 AM Ticket #6 (ReporterFlatFileImporter) created by
- A importer plug-in for reporter
- 10:46 AM Ticket #5 (RawDataFlatFileImporter) closed by
- fixed
- 10:46 AM Ticket #5 (RawDataFlatFileImporter) created by
- A importer plug-in for rawdata.
- 10:44 AM Ticket #4 (PlateFlatFileImporter) closed by
- fixed
- 10:43 AM Ticket #4 (PlateFlatFileImporter) created by
- An importer plug-in for plates.
- 10:41 AM Changeset [1604] by
- Added ReporterType admin
- 10:40 AM Changeset [1603] by
- Added Removable interface to ReporterType
- 10:23 AM Changeset [1602] by
- Bug in reload timer. The same timer can't be reused.
- 9:33 AM Changeset [1601] by
- Removed Swing timer from Keyring and replaced it with TimerTask.
- 9:13 AM Changeset [1600] by
- Added "debugEnabled" boolean so we don't have to generate log messages …
- 8:53 AM Changeset [1599] by
- Moved log statements to log things before they happened.
- 8:43 AM Changeset [1598] by
- Missing quotes around the "id" column when using sequences.
- 8:42 AM Changeset [1597] by
- Fixed a bug where "ch1" was always selected instead of "ch1", …
- 8:40 AM Changeset [1596] by
- Made dynamic table names shorter, since some databases (ie. Oracle) …
- 8:39 AM Changeset [1595] by
- Fixed bug in TestUser causing it to fail if executed on a too fast …
- 8:35 AM Changeset [1594] by
- Fixed bug in FlatFileParser which returned empty strings instead of …
- 8:07 AM Ticket #3 (Update doesn't create indexes) updated by
-
Owner, Component changed
- 8:06 AM Ticket #3 (Update doesn't create indexes) created by
- When using the update option for the installation program …
Nov 12, 2005:
- 1:48 AM Ticket #2 (ability to add image files as annotation for samples) updated by
-
Version, Milestone changed
Nov 11, 2005:
- 4:16 PM Ticket #1 (column names in flatfile parser) updated by
-
Status, Owner changed
- 4:06 PM Changeset [1593] by
- Default logging level set to warn
- 4:04 PM Changeset [1592] by
- Added net.sf.basedb.core logger and removed calls to Application.log …
- 3:38 PM Changeset [1591] by
- Replaced the Swing timer in Application with a jva.util.Timer running …
- 12:12 PM Changeset [1590] by
- Fixed security hole in RawFunction and changed Metadata to help with that.
- 9:56 AM Changeset [1589] by
- Batch API and Query API now uses Log4j to log debuggin information. …
- 8:28 AM Changeset [1588] by
- Fixed bugs in Install causing transactions to be left open if an item …
- 8:00 AM Changeset [1587] by
- Added backticks to filters created by …
- 7:52 AM Changeset [1586] by
- Help is now stored in table HelpTexts since there was a problem with …
Nov 10, 2005:
- 4:02 PM Changeset [1585] by
- IntensityCalculatorUtil now checks that all raw bioassays are using …
- 3:00 PM Changeset [1584] by
- Updated documentation and clean up some code. Fixed bug in …
Nov 9, 2005:
- 11:38 PM Ticket #2 (ability to add image files as annotation for samples) created by
- We have images, of all our mutants under different conditions, that we …
- 4:00 PM Changeset [1583] by
- Updated documentation and cleaned up code.
- 12:23 PM Changeset [1582] by
- Fixed bug in TestExperiment
- 12:15 PM Changeset [1581] by
- Moved around JepUtil to it's own package (net.sf.basedb.util.jep). …
- 12:15 PM Changeset [1580] by
- Added ExperimentTransfer
Nov 8, 2005:
- 7:09 PM Changeset [1579] by
- added some @Override annotations
- 4:06 PM Changeset [1578] by
- Added JepUtil and TestJep Added Log10Expression and LnExpression …
- 1:01 PM Changeset [1577] by
- Can now create root bioassayset using INSERT INTO ... SELECT query.
- 11:59 AM Changeset [1576] by
- Redesigned DynamicQuery and added subclass for each type of query. …
Nov 7, 2005:
- 4:05 PM Changeset [1575] by
- Added IntensityCalculatorUtil and other classes needed by it: …
- 3:33 PM Changeset [1574] by
- Added protocol column
- 2:39 PM Changeset [1573] by
- Fixed old queries, default listing of scans now works
- 1:49 PM Changeset [1572] by
- Documenting
Nov 4, 2005:
- 2:33 PM Changeset [1571] by
- Added migration of reportermap
- 2:21 PM Changeset [1570] by
- Initial revision of WizzzardTransfer
- 2:21 PM Changeset [1569] by
- Fixed quota using new byteQuota in base schemaVersion 1.2.20
- 1:27 PM Changeset [1568] by
- PlateFlatFileImporter complete
- 12:02 PM Changeset [1567] by
- Updated javadoc and clean up the code Added BioAssaySet.getPositionData
- 10:02 AM Changeset [1566] by
- Extra values can now be selected by queries
Nov 3, 2005:
- 4:09 PM Changeset [1565] by
- Small redesign of extra values: Added ExtraValue class. DynamicQuery …
- 11:42 AM Changeset [1564] by
- Fixed typos.
- 11:00 AM Changeset [1563] by
- Removing feature to delete files if transfer successful
- 10:56 AM Changeset [1562] by
- Added PositionExtraValueBatcher and updated dynamic batch documentation
- 10:50 AM Changeset [1561] by
- Added schema version control and uncommented plugin related roles. …
- 1:48 AM Changeset [1560] by
- Added instructions on how to install from a source package, or a …
- 12:20 AM Changeset [1559] by
- Improved installation documentation.
Nov 2, 2005:
- 9:34 PM Changeset [1558] by
- Added info about the trac pages, also made demo servers to open in a …
- 5:56 PM Changeset [1557] by
- PlateFlatFileImporter first draft
- 4:03 PM Changeset [1556] by
- Updated some documentation for extra value batching Added …
- 3:07 PM WikiStart edited by
- (diff)
- 2:57 PM Changeset [1555] by
- Added SpotExtraValueBatcher and other needed classes for it.
- 2:57 PM Ticket #1 (column names in flatfile parser) updated by
-
Milestone changed
- 2:19 PM Changeset [1554] by
- removed all set methods from the parameter types and made the …
- 1:51 PM Ticket #1 (column names in flatfile parser) updated by
- Do columnsnumbers start at \0\ or \1\?
- 1:32 PM Ticket #1 (column names in flatfile parser) updated by
-
Description changed
Nov 1, 2005:
- 4:42 PM Changeset [1553] by
- Documenting and refactoring some DbControl variables
- 3:06 PM Ticket #1 (column names in flatfile parser) created by
- The FlatFileParser is only able to parse columnsnumbers, eg. \4\. The …
- 2:57 PM Changeset [1552] by
- Updated documentation for Dynamic API
- 1:49 PM Changeset [1551] by
- Fixed ArrayBlock transfer which now saves Features properly. …
- 10:59 AM Changeset [1550] by
- just corrected a small typo
- 9:08 AM Changeset [1549] by
- RawDataBatcher now looks for Affy featues in the AffyFeatures table …
Oct 31, 2005:
- 5:22 PM Changeset [1548] by
- Initial revision of ArrayBlockTransfer. Added includeArrayBlock = yes …
- 4:49 PM Changeset [1547] by
- Added experimental localMySQL transfer and a seperated …
- 4:46 PM Changeset [1546] by
- Initial revision of ArrayTypePlateTransfer
- 4:08 PM Changeset [1545] by
- Fixed problem with DataQuery not working when multiple raw data types …
- 3:49 PM Changeset [1544] by
- DynamicQuery can now join raw data
- 3:39 PM Changeset [1543] by
- Initial revision of ArrayType
- 1:07 PM Changeset [1542] by
- DynamiQuery now supports parameters and limits
Oct 28, 2005:
- 4:07 PM Changeset [1541] by
- Started to investigate how limits should be implemented in dynamic queries.
- 2:48 PM Changeset [1540] by
- DynamicQuery may now join the reporters table
- 1:36 PM Changeset [1539] by
- changed RawBioAssay header value from varchar(255) to text
- 9:56 AM Changeset [1538] by
- Implemented delete operation for BioAssaySet, Transformation and VirtualDb
Oct 27, 2005:
- 4:06 PM Changeset [1537] by
- Added support for deleting DataCube, DataCubeLayer and DataCubeFilter …
- 3:40 PM Changeset [1536] by
- handleHeader added
- 2:59 PM Changeset [1535] by
- added some javadoc
- 2:23 PM Changeset [1534] by
- RawDataFlatFileImporter is operational
- 1:52 PM Changeset [1533] by
- Dynamic batchers now updates the disk usage of the experiment.
- 1:19 PM Changeset [1532] by
- Quick transfer is now configurable for testing purposes. Added some …
- 11:47 AM Changeset [1531] by
- Fixed problem with closing and flushing of batchers.
- 9:54 AM Changeset [1530] by
- added a totalinsert counter to the batch system corected the reporter …
- 9:34 AM Changeset [1529] by
- Added -w option (wait for keypress before starting to delete items) to …
Oct 26, 2005:
- 3:58 PM Changeset [1528] by
- Added MappingBatcher
- 2:46 PM Changeset [1527] by
- Cleaned up and documented BioAssay, BioAssaySet, Experiment, …
- 1:09 PM Changeset [1526] by
- Seperation of RawBioAssay and it's data into two classes. Also added …
- 1:08 PM Changeset [1525] by
- Adding Image, and RawBioAssayParameters
- 1:07 PM Changeset [1524] by
- RawDataFlatFileImporter imports data
Oct 25, 2005:
- 4:51 PM Changeset [1523] by
- RawDataFlatFileImporter configures and runs TODO: handleData(..)
- 4:31 PM Changeset [1522] by
- changed the validation methods
- 4:28 PM Changeset [1521] by
- changed the batch list creationplace
- 3:50 PM Changeset [1520] by
- Added query aggregate expression. BioAssay and BioAssaySet now count …
- 1:36 PM Changeset [1519] by
- Creating basic filtered bioassaysets is now working
- 11:21 AM Changeset [1518] by
- First simple form of a query against the dynamic database is not working
- 11:12 AM Changeset [1517] by
- Using the new image file transfer in UploadFileTransfer
- 11:11 AM Changeset [1516] by
- saveItem now expects the item to already be saved to the database
- 10:40 AM Changeset [1515] by
- Adding Image file transfer
- 10:40 AM Changeset [1514] by
- Adding done() statement
- 9:42 AM Changeset [1513] by
- Adding done() statements
- 9:42 AM Changeset [1512] by
- Adding getDuration() method
- 8:48 AM Changeset [1511] by
- Added missing dependency control for protocolTransfer
- 8:48 AM Changeset [1510] by
- Using recursive run(PreparedStatement,int,int)
- 8:46 AM Changeset [1509] by
- getReporterById handles exceptions
- 8:46 AM Changeset [1508] by
- itemList is initiated within run(PreparedStatement ps, int from, int …
Oct 24, 2005:
- 4:44 PM Changeset [1507] by
- Adding done() statements
- 4:28 PM Changeset [1506] by
- Adding comments and recoding MappedPlateTransfer.
- 4:27 PM Changeset [1505] by
- createItem now returns the created Extract instead of null
- 4:03 PM Changeset [1504] by
- Added skeleton classes for DynamicQuery and DynamicResultIterator.
- 2:33 PM Changeset [1503] by
- Added SpotBatcher
- 11:53 AM Changeset [1502] by
- Linking BioAssaySet, BioAssay, DataCube and DataCubeColumn and their …
Note:
See TracTimeline
for information about the timeline view.
