Timeline
Nov 14, 2005:
- 8:02 PM Changeset [1607] by
- Updated development status
- 4:07 PM Changeset [1606] by
- Added View/Reporters?
- 2:54 PM Changeset [1605] by
- ExtendedProperty?.getTitle now returns the title instead of the name
- 11:27 AM Ticket #10 (Analysis: Hierarchical clustering) created by
- Hierarchical clustering, bottom-up. The two closest points are merged …
- 11:08 AM Ticket #9 (Normalization: Lowess) created by
- A plug-in for lowess normalization. For more info on LOWESS: …
- 10:55 AM Ticket #8 (PrintMapBlockFileImporter) created by
- A importer plugin-in for print maps.
- 10:50 AM Ticket #7 (ReporterMapFlatFileImporter) closed by
- fixed
- 10:50 AM Ticket #7 (ReporterMapFlatFileImporter) created by
- A importer plug-in for reporter maps.
- 10:48 AM Ticket #6 (ReporterFlatFileImporter) closed by
- fixed
- 10:48 AM Ticket #6 (ReporterFlatFileImporter) created by
- A importer plug-in for reporter
- 10:46 AM Ticket #5 (RawDataFlatFileImporter) closed by
- fixed
- 10:46 AM Ticket #5 (RawDataFlatFileImporter) created by
- A importer plug-in for rawdata.
- 10:44 AM Ticket #4 (PlateFlatFileImporter) closed by
- fixed
- 10:43 AM Ticket #4 (PlateFlatFileImporter) created by
- An importer plug-in for plates.
- 10:41 AM Changeset [1604] by
- Added ReporterType? admin
- 10:40 AM Changeset [1603] by
- Added Removable interface to ReporterType?
- 10:23 AM Changeset [1602] by
- Bug in reload timer. The same timer can't be reused.
- 9:33 AM Changeset [1601] by
- Removed Swing timer from Keyring and replaced it with TimerTask?.
- 9:13 AM Changeset [1600] by
- Added "debugEnabled" boolean so we don't have to generate log messages …
- 8:53 AM Changeset [1599] by
- Moved log statements to log things before they happened.
- 8:43 AM Changeset [1598] by
- Missing quotes around the "id" column when using sequences.
- 8:42 AM Changeset [1597] by
- Fixed a bug where "ch1" was always selected instead of "ch1", …
- 8:40 AM Changeset [1596] by
- Made dynamic table names shorter, since some databases (ie. Oracle) …
- 8:39 AM Changeset [1595] by
- Fixed bug in TestUser? causing it to fail if executed on a too fast …
- 8:35 AM Changeset [1594] by
- Fixed bug in FlatFileParser? which returned empty strings instead of …
- 8:06 AM Ticket #3 (Update doesn't create indexes) created by
- When using the update option for the installation program …
Nov 11, 2005:
- 4:06 PM Changeset [1593] by
- Default logging level set to warn
- 4:04 PM Changeset [1592] by
- Added net.sf.basedb.core logger and removed calls to Application.log …
- 3:38 PM Changeset [1591] by
- Replaced the Swing timer in Application with a jva.util.Timer running …
- 12:12 PM Changeset [1590] by
- Fixed security hole in RawFunction? and changed Metadata to help with that.
- 9:56 AM Changeset [1589] by
- Batch API and Query API now uses Log4j to log debuggin information. …
- 8:28 AM Changeset [1588] by
- Fixed bugs in Install causing transactions to be left open if an item …
- 8:00 AM Changeset [1587] by
- Added backticks to filters created by …
- 7:52 AM Changeset [1586] by
- Help is now stored in table HelpTexts? since there was a problem with …
Nov 10, 2005:
- 4:02 PM Changeset [1585] by
- IntensityCalculatorUtil? now checks that all raw bioassays are using …
- 3:00 PM Changeset [1584] by
- Updated documentation and clean up some code. Fixed bug in …
Nov 9, 2005:
- 11:38 PM Ticket #2 (ability to add image files as annotation for samples) created by
- We have images, of all our mutants under different conditions, that we …
- 4:00 PM Changeset [1583] by
- Updated documentation and cleaned up code.
- 12:23 PM Changeset [1582] by
- Fixed bug in TestExperiment?
- 12:15 PM Changeset [1581] by
- Moved around JepUtil? to it's own package (net.sf.basedb.util.jep). …
- 12:15 PM Changeset [1580] by
- Added ExperimentTransfer?
Nov 8, 2005:
- 7:09 PM Changeset [1579] by
- added some @Override annotations
- 4:06 PM Changeset [1578] by
- Added JepUtil? and TestJep? Added Log10Expression and LnExpression? …
- 1:01 PM Changeset [1577] by
- Can now create root bioassayset using INSERT INTO ... SELECT query.
- 11:59 AM Changeset [1576] by
- Redesigned DynamicQuery? and added subclass for each type of query. …
Nov 7, 2005:
- 4:05 PM Changeset [1575] by
- Added IntensityCalculatorUtil? and other classes needed by it: …
- 3:33 PM Changeset [1574] by
- Added protocol column
- 2:39 PM Changeset [1573] by
- Fixed old queries, default listing of scans now works
- 1:49 PM Changeset [1572] by
- Documenting
Nov 4, 2005:
- 2:33 PM Changeset [1571] by
- Added migration of reportermap
- 2:21 PM Changeset [1570] by
- Initial revision of WizzzardTransfer?
- 2:21 PM Changeset [1569] by
- Fixed quota using new byteQuota in base schemaVersion 1.2.20
- 1:27 PM Changeset [1568] by
- PlateFlatFileImporter? complete
- 12:02 PM Changeset [1567] by
- Updated javadoc and clean up the code Added BioAssaySet?.getPositionData
- 10:02 AM Changeset [1566] by
- Extra values can now be selected by queries
Nov 3, 2005:
- 4:09 PM Changeset [1565] by
- Small redesign of extra values: Added ExtraValue? class. DynamicQuery? …
- 11:42 AM Changeset [1564] by
- Fixed typos.
- 11:00 AM Changeset [1563] by
- Removing feature to delete files if transfer successful
- 10:56 AM Changeset [1562] by
- Added PositionExtraValueBatcher? and updated dynamic batch documentation
- 10:50 AM Changeset [1561] by
- Added schema version control and uncommented plugin related roles. …
- 1:48 AM Changeset [1560] by
- Added instructions on how to install from a source package, or a …
- 12:20 AM Changeset [1559] by
- Improved installation documentation.
Nov 2, 2005:
- 9:34 PM Changeset [1558] by
- Added info about the trac pages, also made demo servers to open in a …
- 5:56 PM Changeset [1557] by
- PlateFlatFileImporter? first draft
- 4:03 PM Changeset [1556] by
- Updated some documentation for extra value batching Added …
- 3:07 PM WikiStart edited by
- (diff)
- 2:57 PM Changeset [1555] by
- Added SpotExtraValueBatcher? and other needed classes for it.
- 2:19 PM Changeset [1554] by
- removed all set methods from the parameter types and made the …
Nov 1, 2005:
- 4:42 PM Changeset [1553] by
- Documenting and refactoring some DbControl? variables
- 3:06 PM Ticket #1 (column names in flatfile parser) created by
- The FlatFileParser? is only able to parse columnsnumbers, eg. \4\. The …
- 2:57 PM Changeset [1552] by
- Updated documentation for Dynamic API
- 1:49 PM Changeset [1551] by
- Fixed ArrayBlock? transfer which now saves Features properly. …
- 10:59 AM Changeset [1550] by
- just corrected a small typo
- 9:08 AM Changeset [1549] by
- RawDataBatcher? now looks for Affy featues in the AffyFeatures? table …
Oct 31, 2005:
- 5:22 PM Changeset [1548] by
- Initial revision of ArrayBlockTransfer?. Added includeArrayBlock = yes …
- 4:49 PM Changeset [1547] by
- Added experimental localMySQL transfer and a seperated …
- 4:46 PM Changeset [1546] by
- Initial revision of ArrayTypePlateTransfer?
- 4:08 PM Changeset [1545] by
- Fixed problem with DataQuery? not working when multiple raw data types …
- 3:49 PM Changeset [1544] by
- DynamicQuery? can now join raw data
- 3:39 PM Changeset [1543] by
- Initial revision of ArrayType?
- 1:07 PM Changeset [1542] by
- DynamiQuery? now supports parameters and limits
Oct 28, 2005:
- 4:07 PM Changeset [1541] by
- Started to investigate how limits should be implemented in dynamic queries.
- 2:48 PM Changeset [1540] by
- DynamicQuery? may now join the reporters table
- 1:36 PM Changeset [1539] by
- changed RawBioAssay? header value from varchar(255) to text
- 9:56 AM Changeset [1538] by
- Implemented delete operation for BioAssaySet?, Transformation and VirtualDb?
Oct 27, 2005:
- 4:06 PM Changeset [1537] by
- Added support for deleting DataCube?, DataCubeLayer? and DataCubeFilter? …
- 3:40 PM Changeset [1536] by
- handleHeader added
- 2:59 PM Changeset [1535] by
- added some javadoc
- 2:23 PM Changeset [1534] by
- RawDataFlatFileImporter? is operational
- 1:52 PM Changeset [1533] by
- Dynamic batchers now updates the disk usage of the experiment.
- 1:19 PM Changeset [1532] by
- Quick transfer is now configurable for testing purposes. Added some …
- 11:47 AM Changeset [1531] by
- Fixed problem with closing and flushing of batchers.
- 9:54 AM Changeset [1530] by
- added a totalinsert counter to the batch system corected the reporter …
- 9:34 AM Changeset [1529] by
- Added -w option (wait for keypress before starting to delete items) to …
Oct 26, 2005:
- 3:58 PM Changeset [1528] by
- Added MappingBatcher?
- 2:46 PM Changeset [1527] by
- Cleaned up and documented BioAssay?, BioAssaySet?, Experiment, …
- 1:09 PM Changeset [1526] by
- Seperation of RawBioAssay? and it's data into two classes. Also added …
- 1:08 PM Changeset [1525] by
- Adding Image, and RawBioAssayParameters?
- 1:07 PM Changeset [1524] by
- RawDataFlatFileImporter? imports data
Oct 25, 2005:
- 4:51 PM Changeset [1523] by
- RawDataFlatFileImporter? configures and runs TODO: handleData(..)
- 4:31 PM Changeset [1522] by
- changed the validation methods
- 4:28 PM Changeset [1521] by
- changed the batch list creationplace
- 3:50 PM Changeset [1520] by
- Added query aggregate expression. BioAssay? and BioAssaySet? now count …
- 1:36 PM Changeset [1519] by
- Creating basic filtered bioassaysets is now working
- 11:21 AM Changeset [1518] by
- First simple form of a query against the dynamic database is not working
- 11:12 AM Changeset [1517] by
- Using the new image file transfer in UploadFileTransfer?
- 11:11 AM Changeset [1516] by
- saveItem now expects the item to already be saved to the database
- 10:40 AM Changeset [1515] by
- Adding Image file transfer
- 10:40 AM Changeset [1514] by
- Adding done() statement
- 9:42 AM Changeset [1513] by
- Adding done() statements
- 9:42 AM Changeset [1512] by
- Adding getDuration() method
- 8:48 AM Changeset [1511] by
- Added missing dependency control for protocolTransfer
- 8:48 AM Changeset [1510] by
- Using recursive run(PreparedStatement?,int,int)
- 8:46 AM Changeset [1509] by
- getReporterById handles exceptions
- 8:46 AM Changeset [1508] by
- itemList is initiated within run(PreparedStatement? ps, int from, int …
Oct 24, 2005:
- 4:44 PM Changeset [1507] by
- Adding done() statements
- 4:28 PM Changeset [1506] by
- Adding comments and recoding MappedPlateTransfer?.
- 4:27 PM Changeset [1505] by
- createItem now returns the created Extract instead of null
- 4:03 PM Changeset [1504] by
- Added skeleton classes for DynamicQuery? and DynamicResultIterator?.
- 2:33 PM Changeset [1503] by
- Added SpotBatcher?
- 11:53 AM Changeset [1502] by
- Linking BioAssaySet?, BioAssay?, DataCube? and DataCubeColumn? and their …
Oct 21, 2005:
- 3:01 PM Changeset [1501] by
- Start linking BioAssaySet? to DataCube? Added DataCubeLayer? and …
- 10:36 AM Changeset [1500] by
- Postgres is now fully working.
Oct 20, 2005:
- 8:40 PM Changeset [1499] by
- Added BioAssay? More implementation of Experiment, Transformation and …
- 1:36 PM Changeset [1498] by
- Documenting
- 11:42 AM Changeset [1497] by
- Added prepareStatement() method
- 11:03 AM Changeset [1496] by
- Small fixes here and there
- 11:02 AM Changeset [1495] by
- Using itemList to save items
- 11:01 AM Changeset [1494] by
- Added done() statement
- 11:01 AM Changeset [1493] by
- Removed debug log
- 11:01 AM Changeset [1492] by
- Initial revision
- 11:00 AM Changeset [1491] by
- Added getById()
- 10:59 AM Changeset [1490] by
- Using getSampleById and getAnnotationTypeById
- 8:53 AM Changeset [1489] by
- Temporary removal of fileTransfers
Oct 19, 2005:
- 10:10 PM Changeset [1488] by
- MeasuredBioMaterials? are not saved anymore during …
- 10:01 PM Changeset [1487] by
- Adding done() statement
- 10:01 PM Changeset [1486] by
- Progress now indicates number of rows that have been processed even if …
- 9:55 PM Changeset [1485] by
- Initial revision
- 9:55 PM Changeset [1484] by
- Protocol associated files are now first uploaded with …
- 3:57 PM Changeset [1483] by
- Added Transformation and BioAssaySet?
- 3:44 PM Changeset [1482] by
- Adding done() statement
- 3:40 PM Changeset [1481] by
- Id's are now mapped using an wrapper item before saving. After items …
- 2:38 PM Changeset [1480] by
- Implemented RawBioAssay?.isUsed
- 2:12 PM Changeset [1479] by
- Test program now test putting raw bioassays in experiments.
- 12:25 PM Changeset [1478] by
- Added c3p0 connection pool and updated license information for …
- 11:33 AM Changeset [1477] by
- Added db.dynamic.catalog and db.dynamic.schema options. Added database …
Oct 18, 2005:
- 3:58 PM Changeset [1476] by
- Added DataCube? Renamed Dynamic* to Virtual* Updated documentation …
- 11:43 AM Changeset [1475] by
- Implemented dynamic table creation Added PositionBatcher?
Oct 17, 2005:
- 4:08 PM Changeset [1474] by
- Added DynamicTables? data-, core- and test-layer class, plus supporting …
- 12:06 PM Changeset [1473] by
- Added ChildItem? and made all child classes extend from this instead of …
- 9:53 AM Changeset [1472] by
- Added ClassUtil?
Oct 16, 2005:
- 2:47 AM Changeset [1471] by
- Changed repository location.
Note: See TracTimeline
for information about the timeline view.
