Timeline



Sep 30, 2005:

3:47 PM Changeset [1395] by Nicklas Nordborg
Updated Dynamic API diagrams
1:31 PM Changeset [1394] by Nicklas Nordborg
Added Dynamic API documentation for filtering workflow example and …

Sep 29, 2005:

3:59 PM Changeset [1393] by Nicklas Nordborg
Added Dynamic API documentation for inserting data
2:52 PM Changeset [1392] by Nicklas Nordborg
Added Dynamic API documentation for inserting data and workflow …
11:41 AM Changeset [1391] by Nicklas Nordborg
Added data layer documentation for dynamic database Added skeleton for …

Sep 28, 2005:

4:02 PM Changeset [1390] by Nicklas Nordborg
Updated experiments design - it is looking good!
8:00 AM Changeset [1389] by Nicklas Nordborg
Changes SUN to Sun Microsystems
8:00 AM Changeset [1388] by Nicklas Nordborg
Fixed ant test so JarPlugin?.jar is built correctly

Sep 27, 2005:

4:18 PM Changeset [1387] by Gregory Vincic
Added common_item_toolbar.jpg
4:18 PM Changeset [1386] by Gregory Vincic
Added popup screenshots
4:17 PM Changeset [1385] by Gregory Vincic
Adding useCases for working with plates and removing the Administrator …
4:10 PM Changeset [1384] by Nicklas Nordborg
Next version of dynamic database
1:26 PM Changeset [1383] by Nicklas Nordborg
Added About dialog to web client
12:04 PM Changeset [1382] by Nicklas Nordborg
Added plugin types admin

Sep 26, 2005:

4:00 PM Changeset [1381] by Gregory Vincic
Initial revision

Sep 23, 2005:

4:02 PM Changeset [1380] by Nicklas Nordborg
Updated because core API has changed
4:02 PM Changeset [1379] by Nicklas Nordborg
Added two new getQuery methods to PluginDefinition? and PluginConfiguration?
10:36 AM Changeset [1378] by Nicklas Nordborg
TestSpotImages? now create red/blue instead of red/green images

Sep 22, 2005:

3:31 PM Changeset [1377] by Nicklas Nordborg
Added PluginType? and test program for it: TestPluginType?, …
1:50 PM Changeset [1376] by Nicklas Nordborg
Implemented changes in plugin system. Added InteractivePlugin? interface.
9:51 AM Changeset [1375] by Nicklas Nordborg
Added version information to Application

Sep 21, 2005:

8:37 PM Changeset [1374] by Nicklas Nordborg
Updated devlopment status
4:05 PM Changeset [1373] by Nicklas Nordborg
Install creates entry for AutoDetectingImporter? Added cache settings …
3:51 PM Changeset [1372] by Nicklas Nordborg
Minor redesign of plugin system Added PluginTypeData?
12:02 PM Changeset [1371] by Nicklas Nordborg
Fixed basd links in development ideas document
12:01 PM Changeset [1370] by Nicklas Nordborg
Moved development ideas document to the /doc/development directory
12:00 PM Changeset [1369] by Nicklas Nordborg
Updated development ideas document
11:46 AM Changeset [1368] by Nicklas Nordborg
Added raw data headers to RawBioAssay?
11:05 AM Changeset [1367] by Nicklas Nordborg
Added list of development ideas
10:56 AM Changeset [1366] by Nicklas Nordborg
New version of experiments and analysis schema Added ReporterList? to …
9:04 AM Changeset [1365] by Gregory Vincic
Using getExistingFile and fixed unattached files
9:04 AM Changeset [1364] by Gregory Vincic
Renaming getNewOrExistingFile to getExistingFile
9:03 AM Changeset [1363] by Gregory Vincic
Using true id for fileNameToIdMap
9:02 AM Changeset [1362] by Gregory Vincic
Fixed problem with unattached files

Sep 20, 2005:

8:11 PM Changeset [1361] by Nicklas Nordborg
Updated development status
4:04 PM Changeset [1360] by Nicklas Nordborg
First version of UML for Experiments
3:00 PM Changeset [1359] by Nicklas Nordborg
Added more progress reporting to Install
11:26 AM Changeset [1358] by Gregory Vincic
Using transferFile directly when file is created
11:01 AM Changeset [1357] by Gregory Vincic
Using transferFile directly when file is created
10:55 AM Changeset [1356] by Gregory Vincic
Added transferFile(file, theBase1File) to FileTransfer?. …
10:09 AM Changeset [1355] by Nicklas Nordborg
Added ChainedProgressReporter? which makes initdb more natural
10:06 AM Changeset [1354] by Nicklas Nordborg
ant dist failed because a file was missing
8:17 AM Changeset [1353] by Nicklas Nordborg
Allowed an application to unload and reload plugin information

Sep 19, 2005:

1:11 PM Changeset [1352] by Gregory Vincic
createItem is done though channel and UseForJPG columns are not used
1:10 PM Changeset [1351] by Gregory Vincic
createItem method is now protected
1:10 PM Changeset [1350] by Gregory Vincic
Added a new sessionControl used when impersonating a user
1:09 PM Changeset [1349] by Gregory Vincic
Added createDirectory method
1:06 PM Changeset [1348] by Gregory Vincic
Added a new sessionControl used when impersonating a user
12:55 PM Changeset [1347] by Nicklas Nordborg
Set the parent class loader in JarClassLoader? to the current threads …
11:48 AM Changeset [1346] by Nicklas Nordborg
Fixed NPE in ReporterMapFlatFileImporter?
11:43 AM Changeset [1345] by Nicklas Nordborg
JarClassLoader? follows manifest classpath and implements findResource

Sep 15, 2005:

3:57 PM Changeset [1344] by Nicklas Nordborg
PluginDefinition? now uses JarClassLoader?
3:38 PM Changeset [1343] by Nicklas Nordborg
Added JarClassLoader? and test program
1:12 PM Changeset [1342] by Nicklas Nordborg
Added plugin definitions admin

Sep 14, 2005:

1:03 AM Changeset [1341] by Jari Häkkinen
HTMLized and improved installation instructions. Added information …

Sep 13, 2005:

8:32 PM Changeset [1340] by Jari Häkkinen
Added link to download source for alpha5.

Sep 12, 2005:

4:01 PM Changeset [1339] by Gregory Vincic
4:00 PM Changeset [1338] by Gregory Vincic
Documenting
4:00 PM Changeset [1337] by Gregory Vincic
Initial revision
2:41 PM Changeset [1336] by Gregory Vincic
Added includeScan
2:41 PM Changeset [1335] by Gregory Vincic
Documenting
2:41 PM Changeset [1334] by Gregory Vincic
Initial revision of ScanTransfer?. Modified Migrater to include …
10:39 AM Changeset [1333] by Gregory Vincic
Documenting
10:32 AM Changeset [1332] by Gregory Vincic
Documenting
10:21 AM Changeset [1331] by Gregory Vincic
Documenting
10:19 AM Changeset [1330] by Gregory Vincic
Removed mapProtocolsToFiles() method and added documentation

Sep 9, 2005:

8:28 PM Changeset [1329] by Nicklas Nordborg
Fixed bad link to installation document
4:40 PM Changeset [1328] by Gregory Vincic
2:14 PM Changeset [1327] by Nicklas Nordborg
The alpha 5 release
2:07 PM Changeset [1326] by Nicklas Nordborg
Released Base 2.0 alpha 5!!!!
2:04 PM Changeset [1325] by Gregory Vincic
Documenting
2:03 PM Changeset [1324] by Gregory Vincic
Added getPlateTypeById and documenting
1:56 PM Changeset [1323] by Nicklas Nordborg
ant dist now takes the correct base.config file
1:51 PM Changeset [1322] by Nicklas Nordborg
Updated installation instructions
1:47 PM Changeset [1321] by Nicklas Nordborg
Added TODO note for jarPath
1:44 PM Changeset [1320] by Gregory Vincic
LabeledExtract? now also sets Extract. Added getExtractById in …
1:25 PM Changeset [1319] by Gregory Vincic
MappedPlates? are working now
1:21 PM Changeset [1318] by Gregory Vincic
Added migration instructions
1:10 PM Changeset [1317] by Gregory Vincic
Activiated file removal
11:06 AM Changeset [1316] by Nicklas Nordborg
Added dist.migrate to ant dist
11:01 AM Changeset [1315] by Gregory Vincic
Documenting
11:01 AM Changeset [1314] by Gregory Vincic
createItem is now protected
11:00 AM Changeset [1313] by Nicklas Nordborg
Added installation instructions based on the old instructions for the …
10:47 AM Changeset [1312] by Nicklas Nordborg
ReporterBatcher? now evicts reporters returned by exists and getByExternalId
10:34 AM Changeset [1311] by Nicklas Nordborg
The PluginRequest? returned by Job.execute() now update the status of …
9:00 AM Changeset [1310] by Gregory Vincic
Status update 2005-09-08

Sep 8, 2005:

7:02 PM Changeset [1309] by Johan Enell
ReporterMap? test
4:47 PM Changeset [1308] by Gregory Vincic
Documenting
4:41 PM Changeset [1307] by Gregory Vincic
Documenting
4:34 PM Changeset [1306] by Gregory Vincic
Adding getProtocolTypeById and getPlateTypeById and documenting
4:22 PM Changeset [1305] by Gregory Vincic
Documenting
4:21 PM Changeset [1304] by Gregory Vincic
Documenting
3:44 PM Changeset [1303] by Gregory Vincic
Fixing bug for reporterId and wellId's
3:43 PM Changeset [1302] by Gregory Vincic
Changing createItem method to protected
3:43 PM Changeset [1301] by Gregory Vincic
Moving null value check into saveItem() in run() method
3:42 PM Changeset [1300] by Gregory Vincic
Documenting
3:40 PM Changeset [1299] by Nicklas Nordborg
Fixed bug where properties in ArrayDesignBlock:s didn't get updated
3:23 PM Changeset [1298] by Nicklas Nordborg
Fixed javadoc warnings
2:34 PM Changeset [1297] by Johan Enell
1:33 PM Changeset [1296] by Gregory Vincic
Documenting
1:01 PM Changeset [1295] by Gregory Vincic
Documenting
12:49 PM Changeset [1294] by Nicklas Nordborg
Added success parameter to AbstractFlatFileImporter?.end() method
12:42 PM Changeset [1293] by Nicklas Nordborg
Changed TestReporter? to display other columns.
12:31 PM Changeset [1292] by Nicklas Nordborg
Added "Update existing reporter" option to ReporterFlatFileParser?
12:07 PM Changeset [1291] by Gregory Vincic
Documenting
12:02 PM Changeset [1290] by Nicklas Nordborg
Added ConsoleProgressReporter? and updated test programs to use it
11:30 AM Changeset [1289] by Nicklas Nordborg
Fixed bug in FlatFileParser?
11:28 AM Changeset [1288] by Gregory Vincic
Fixing setArraySlide for Hybridizations
11:27 AM Changeset [1287] by Gregory Vincic
Fixing log output in the select method
11:20 AM Changeset [1286] by Nicklas Nordborg
Fixed ant dist to include documentation, etc.
10:41 AM Changeset [1285] by Nicklas Nordborg
Added JDOM
10:39 AM Changeset [1284] by Nicklas Nordborg
Added license texts and information about 3:rd-party components
10:35 AM Changeset [1283] by Gregory Vincic
Fixed new call to BlockInfo?
10:08 AM Changeset [1282] by Gregory Vincic
Fixed new call to BlockInfo?
10:05 AM Changeset [1281] by Gregory Vincic
Removing PhysicalFileTransfer?.java
10:03 AM Changeset [1280] by Gregory Vincic
ArrayDesignTransfer? now seems to work, transferring the basic data
10:01 AM Changeset [1279] by Gregory Vincic
Added getReporterById() method
10:00 AM Changeset [1278] by Gregory Vincic
Added a few columns to the sql query
9:59 AM Changeset [1277] by Gregory Vincic
Added getPlateById() method
9:58 AM Changeset [1276] by Gregory Vincic
Added getMaxId() method
9:35 AM Changeset [1275] by Nicklas Nordborg
Added support for min and max data columns parameters to …

Sep 7, 2005:

5:17 PM Changeset [1274] by Johan Enell
ReporterMap? importer added
3:57 PM Changeset [1273] by Nicklas Nordborg
Added LineType? enum to FlatFileParser? instead of using int constants
3:28 PM Changeset [1272] by Nicklas Nordborg
Added more constructors to ParameterType:s
2:12 PM Changeset [1271] by Gregory Vincic
Initial revision
1:33 PM Changeset [1270] by Nicklas Nordborg
Documented Abstract- and ReporterFlatFileImporter?.
12:27 PM Changeset [1269] by Nicklas Nordborg
Added AbstractPlugin?.validateRequestParameters and javadoc
11:45 AM Changeset [1268] by Nicklas Nordborg
Fixed bad image
11:29 AM Changeset [1267] by Nicklas Nordborg
Added Plugin.getItems() method and changed about() and type() to …
9:06 AM Changeset [1266] by Nicklas Nordborg
Fixed problem with ItemParameterValue? mapping

Sep 6, 2005:

8:41 PM Changeset [1265] by Nicklas Nordborg
Fixed a NPE in ReporterFlatFileImporter? Added better constructors to …
4:53 PM Changeset [1264] by Johan Enell
Test job
4:11 PM Changeset [1263] by Nicklas Nordborg
Added import of extended columns to ReporterFlatFileImporter?
4:06 PM Changeset [1262] by Gregory Vincic
Removing verifyMappedIds()
4:00 PM Changeset [1261] by Gregory Vincic
Saving arrayDesign before adding block
3:50 PM Changeset [1260] by Gregory Vincic
Adding uggly fix to the problem of missing items from queries
2:44 PM Changeset [1259] by Gregory Vincic
Cleaning up requirements section
2:17 PM Changeset [1258] by Nicklas Nordborg
Test reporter import now delete it's job
2:07 PM Changeset [1257] by Johan Enell
create and delete in TestJob?
1:49 PM Changeset [1256] by Nicklas Nordborg
ReporterFlatFileImporter? now has a working skeleton. Added test class.
1:47 PM Changeset [1255] by Gregory Vincic
Fixed dependency check
1:02 PM Changeset [1254] by Gregory Vincic
Adding createItem and getPlateList
11:12 AM Changeset [1253] by Johan Enell
added ProgressReporter? parameter to Job.execute()
11:08 AM Changeset [1252] by Johan Enell
added ProgressReporter? parameter to Job.execute()
11:00 AM Changeset [1251] by Johan Enell
Plugin configuratin is tested
10:29 AM Changeset [1250] by Gregory Vincic
Documenting
10:28 AM Changeset [1249] by Gregory Vincic
Initial revision of ArraySlide? and ArrayBatchTransfer?
9:53 AM Changeset [1248] by Nicklas Nordborg
ReporterFlatFileImporter? is now ready to be tested
9:34 AM Changeset [1247] by Johan Enell
added throws baseexception in the interface

Sep 5, 2005:

8:34 PM Changeset [1246] by Gregory Vincic
Removing @author statements from methods
7:50 PM Changeset [1245] by Gregory Vincic
Adding dependency checking
4:09 PM Changeset [1244] by Nicklas Nordborg
Readded AbstractFlatFileImporter? and ReporterFlatFileImporter?.
3:56 PM Changeset [1243] by Johan Enell
added the build folder to svn:ignore
3:53 PM Changeset [1242] by Johan Enell
PluginDefinition? tested
3:40 PM Changeset [1241] by Johan Enell
id tag updated
3:38 PM Changeset [1240] by Johan Enell
NullPlugin? created
2:14 PM Changeset [1239] by Johan Enell
AbstractPlugin? created
1:57 PM Changeset [1238] by Nicklas Nordborg
Implemented core part of the plugin system
1:42 PM Changeset [1237] by Gregory Vincic
Adding SampleTissue?
12:11 PM Changeset [1236] by Gregory Vincic
Documenting
12:10 PM Changeset [1235] by Gregory Vincic
Initial revision
12:09 PM Changeset [1234] by Gregory Vincic
Initial revision
12:08 PM Changeset [1233] by Gregory Vincic
Renamming getSelects to countRows
11:56 AM Changeset [1232] by Gregory Vincic
Documenting
11:55 AM Changeset [1231] by Gregory Vincic
Documenting
11:54 AM Changeset [1230] by Gregory Vincic
Documenting
11:54 AM Changeset [1229] by Gregory Vincic
Documenting
11:53 AM Changeset [1228] by Gregory Vincic
Using setCommonData
11:53 AM Changeset [1227] by Gregory Vincic
Documenting
11:52 AM Changeset [1226] by Gregory Vincic
Documenting
11:36 AM Changeset [1225] by Gregory Vincic
Using incode class in quickstart
11:24 AM Changeset [1224] by Gregory Vincic
Adding requirements and clarifying quickstart
11:21 AM Changeset [1223] by Gregory Vincic
Documenting
9:49 AM Changeset [1222] by Gregory Vincic
Documenting
9:27 AM Changeset [1221] by Gregory Vincic
Fixing stop call
9:26 AM Changeset [1220] by Gregory Vincic
Documenting
9:02 AM Changeset [1219] by Nicklas Nordborg
Removed PluginJobData? and made JobData? have a type and optional …
8:49 AM Changeset [1218] by Gregory Vincic
Documenting
8:23 AM Changeset [1217] by Gregory Vincic
Set MappedPlates? to no, it's not working properly
8:01 AM Changeset [1216] by Gregory Vincic
Added ArrayBatch?- and ArrayDesignTransfer? classes

Sep 2, 2005:

5:05 PM Changeset [1215] by Johan Enell
getters in About
5:03 PM Changeset [1214] by Johan Enell
updated plugin design
4:51 PM Changeset [1213] by Johan Enell
just a small syntax update
4:04 PM Changeset [1212] by Nicklas Nordborg
Begin implementation of new plugin system
3:55 PM Changeset [1211] by Johan Enell
updated plugin design
1:56 PM Changeset [1210] by Gregory Vincic
Initial revision
1:56 PM Changeset [1209] by Gregory Vincic
Including Array*
1:54 PM Changeset [1208] by Gregory Vincic
Bug fix, Protocols do not have to have a file associated to them
1:54 PM Changeset [1207] by Gregory Vincic
Adding ArrayBatch? and ArrayDesign? Transfer
1:53 PM Changeset [1206] by Gregory Vincic
Initial revision
1:50 PM Changeset [1205] by Nicklas Nordborg
New design of the plugin system
1:25 PM Changeset [1204] by Johan Enell
updated plugin design
1:04 PM Changeset [1203] by Gregory Vincic
Fixing bug in chown
1:03 PM Changeset [1202] by Gregory Vincic
Saving file within createItem
1:03 PM Changeset [1201] by Gregory Vincic
Added some logging
1:02 PM Changeset [1200] by Gregory Vincic
Using DELIMITER for separation of data in the description
1:01 PM Changeset [1199] by Gregory Vincic
Commenting
1:01 PM Changeset [1198] by Gregory Vincic
Nicer tissue string
1:00 PM Changeset [1197] by Gregory Vincic
Only transfer files that are of size 0
1:00 PM Changeset [1196] by Gregory Vincic
Added filechecking through md5
12:59 PM Changeset [1195] by Gregory Vincic
Added a PhysicalFileTransfer? after UploadTransfer? is done
12:58 PM Changeset [1194] by Gregory Vincic
Initial revision
11:49 AM Changeset [1193] by Gregory Vincic
Plates are now destroyed after transfer
Note: See TracTimeline for information about the timeline view.