Timeline



Apr 8, 2009:

10:29 AM Changeset [4894] by Nicklas Nordborg
References #1271: Add extension points to all toolbars Toolbar …
10:29 AM Ticket #1271 (Add extension points to all toolbars) updated by Nicklas Nordborg
(In [4894]) References #1271: Add extension points to all toolbars …
10:17 AM Changeset [4893] by Nicklas Nordborg
Fixes #1295: Downloading files with space characters in the filename …
10:17 AM Ticket #1295 (Downloading files with space characters in the filename will suggest ...) closed by Nicklas Nordborg
fixed: (In [4893]) Fixes #1295: Downloading files with space characters in …
10:05 AM Ticket #1296 (Disallow quote characters in file names) closed by Nicklas Nordborg
fixed: (In [4892]) Fixes #1296: Disallow quote characters in file names
10:05 AM Changeset [4892] by Nicklas Nordborg
Fixes #1296: Disallow quote characters in file names
9:58 AM Ticket #1295 (Downloading files with space characters in the filename will suggest ...) updated by Nicklas Nordborg
Quoting the file name seems to work well with FF3, but has no effect …
9:22 AM Ticket #1296 (Disallow quote characters in file names) updated by Nicklas Nordborg
Status changed
9:22 AM Ticket #1296 (Disallow quote characters in file names) created by Nicklas Nordborg
It should probably have been in the list of "forbidden" characters to …
9:18 AM Ticket #1295 (Downloading files with space characters in the filename will suggest ...) updated by Nicklas Nordborg
Priority, Status, Owner, Milestone changed
It seems like browsers handle this differently. IE replaces the space …
9:15 AM Ticket #1294 (Limit the vertical size of "Projects", "New messages" and "News and ...) updated by Jari Häkkinen
Replying to nicklas: > IF we go for a flag I think it …
8:39 AM Ticket #1295 (Downloading files with space characters in the filename will suggest ...) updated by Jari Häkkinen
Version changed
8:39 AM Ticket #1295 (Downloading files with space characters in the filename will suggest ...) created by Jari Häkkinen
I am not sure if this is a BASE problem but it is annoying because, in …
8:28 AM Ticket #1294 (Limit the vertical size of "Projects", "New messages" and "News and ...) updated by Nicklas Nordborg
IF we go for a flag I think it should be an option to hide the …
8:12 AM Ticket #1294 (Limit the vertical size of "Projects", "New messages" and "News and ...) updated by Jari Häkkinen
Summary changed
7:45 AM Ticket #1294 (Limit the vertical size of "Projects", "New messages" and "News and ...) updated by Jari Häkkinen
Description changed
7:43 AM Ticket #1294 (Limit the vertical size of "Projects", "New messages" and "News and ...) created by Jari Häkkinen
As a university core facility our staff have many projects and in …

Apr 7, 2009:

9:50 AM Ticket #1290 (Change source files to UTF-8) closed by Nicklas Nordborg
fixed
9:48 AM Changeset [4891] by Nicklas Nordborg
Fixes #1291: Batch importing same labeled extract in more than one …
9:48 AM Ticket #1291 (Batch importing same labeled extract in more than one array on a ...) closed by Nicklas Nordborg
fixed: (In [4891]) Fixes #1291: Batch importing same labeled extract in more …
9:32 AM Ticket #1291 (Batch importing same labeled extract in more than one array on a ...) updated by Nicklas Nordborg
Owner, Status changed
9:03 AM Changeset [4890] by Nicklas Nordborg
Fixes #1292: Use colours when reporting job status in a pop-up
9:03 AM Ticket #1292 (Use colours when reporting job status in a pop-up) closed by Nicklas Nordborg
fixed: (In [4890]) Fixes #1292: Use colours when reporting job status in a pop-up
8:52 AM Ticket #1292 (Use colours when reporting job status in a pop-up) updated by Nicklas Nordborg
Status, Owner changed
8:40 AM Ticket #1291 (Batch importing same labeled extract in more than one array on a ...) updated by Jari Häkkinen
Replying to nicklas: > I'll see if we can report this as …

Apr 6, 2009:

7:33 PM Ticket #1291 (Batch importing same labeled extract in more than one array on a ...) updated by Nicklas Nordborg
Priority, Milestone changed
A given labeled extract can only be assigned to one place on a …
7:26 PM Ticket #1292 (Use colours when reporting job status in a pop-up) updated by Nicklas Nordborg
[…] is a starting point. Check that it looks ok.
7:25 PM Ticket #1292 (Use colours when reporting job status in a pop-up) updated by Nicklas Nordborg
Priority, Milestone changed
4:51 PM Ticket #1293 (Changing name of the 'File' entry in the top toolbar to 'BASE') created by Jari Häkkinen
The content of the 'File' menu entry does not look like a standard …
4:47 PM Ticket #1292 (Use colours when reporting job status in a pop-up) created by Jari Häkkinen
Sometimes the error message in the job pop-up can be hard to spot. Can …
4:45 PM Ticket #1291 (Batch importing same labeled extract in more than one array on a ...) created by Jari Häkkinen
I noticed that trying to batch import a multi-array hybridization with …
2:52 PM Changeset [4889] by Nicklas Nordborg
References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
2:52 PM Ticket #1290 (Change source files to UTF-8) updated by Nicklas Nordborg
(In [4889]) References #1290: Change source files to UTF-8 Changed …
2:15 PM Changeset [4888] by Nicklas Nordborg
References #1290: Change source files to UTF-8 All *.java, *.jsp and …
2:15 PM Ticket #1290 (Change source files to UTF-8) updated by Nicklas Nordborg
(In [4888]) References #1290: Change source files to UTF-8 All …
12:40 PM Ticket #1290 (Change source files to UTF-8) updated by Nicklas Nordborg
Owner, Status, Description changed
12:38 PM Ticket #1290 (Change source files to UTF-8) created by Nicklas Nordborg
I think it is time to convert all our source code files to use UTF-8 …
9:58 AM Changeset [4887] by Nicklas Nordborg
Fixes #1271: Add extension points to all toolbars All toolbars should …
9:58 AM Ticket #1271 (Add extension points to all toolbars) closed by Nicklas Nordborg
fixed: (In [4887]) Fixes #1271: Add extension points to all toolbars All …

Apr 3, 2009:

3:02 PM Changeset [4886] by Nicklas Nordborg
References #1271: Add extension points to all toolbars Added code for …
3:02 PM Ticket #1271 (Add extension points to all toolbars) updated by Nicklas Nordborg
(In [4886]) References #1271: Add extension points to all toolbars …
1:50 PM Ticket #1289 (Biomaterial classes should implement the Registered interface) updated by Nicklas Nordborg
(In [4885]) References #1289: Biomaterial classes should implement the …
1:50 PM Changeset [4885] by Nicklas Nordborg
References #1289: Biomaterial classes should implement the Registered …
1:49 PM Changeset [4884] by Nicklas Nordborg
References #1271: Add extension points to all toolbars Added code for …
1:49 PM Ticket #1271 (Add extension points to all toolbars) updated by Nicklas Nordborg
(In [4884]) References #1271: Add extension points to all toolbars …
1:01 PM Changeset [4883] by Martin Svensson
References #1281 Updates a missed title
1:01 PM Ticket #1281 (Change display-format of Biowell coordinates) updated by Martin Svensson
(In [4883]) References #1281 Updates a missed title
12:53 PM Changeset [4882] by Nicklas Nordborg
References #1271: Add extension points to all toolbars Added code for …
12:53 PM Ticket #1271 (Add extension points to all toolbars) updated by Nicklas Nordborg
(In [4882]) References #1271: Add extension points to all toolbars …
12:40 PM Changeset [4881] by Nicklas Nordborg
References #1289: Biomaterial classes should implement the Registered …
12:40 PM Ticket #1289 (Biomaterial classes should implement the Registered interface) updated by Nicklas Nordborg
(In [4881]) References #1289: Biomaterial classes should implement the …
11:39 AM Changeset [4880] by Nicklas Nordborg
Fixes #1289: Biomaterial classes should implement the Registered interface
11:39 AM Ticket #1289 (Biomaterial classes should implement the Registered interface) closed by Nicklas Nordborg
fixed: (In [4880]) Fixes #1289: Biomaterial classes should implement the …
11:26 AM Changeset [4879] by Nicklas Nordborg
References #1271: Add extension points to all toolbars Added code for …
11:26 AM Ticket #1271 (Add extension points to all toolbars) updated by Nicklas Nordborg
(In [4879]) References #1271: Add extension points to all toolbars …
11:24 AM Ticket #1289 (Biomaterial classes should implement the Registered interface) updated by Nicklas Nordborg
Owner, Status changed
11:24 AM Ticket #1289 (Biomaterial classes should implement the Registered interface) created by Nicklas Nordborg
The Registered interface was introduced by #1166. But it was only …
10:36 AM Ticket #1120 (The dynamic part of BASE should keep track whether intensity data is ...) updated by Jari Häkkinen
Description, Summary changed
More arguments for storing information in BASE about how data is …
9:05 AM Changeset [4878] by Nicklas Nordborg
References #1271: Add extension points to all toolbars Added …
9:05 AM Ticket #1271 (Add extension points to all toolbars) updated by Nicklas Nordborg
(In [4878]) References #1271: Add extension points to all toolbars …
8:39 AM Ticket #1128 (Export of child items) updated by Martin Svensson
Status, Owner changed
8:32 AM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) closed by Martin Svensson
fixed: See related tickets: #1281, #1282
8:13 AM Ticket #1288 (Tables doesn't indicate if there is a filter on a property that ...) updated by Nicklas Nordborg
(In [4877]) References #1288: Tables doesn't indicate if there is a …
8:13 AM Changeset [4877] by Nicklas Nordborg
References #1288: Tables doesn't indicate if there is a filter on a …
8:10 AM Changeset [4876] by Nicklas Nordborg
Fixes #1288: Tables doesn't indicate if there is a filter on a …
8:10 AM Ticket #1288 (Tables doesn't indicate if there is a filter on a property that ...) closed by Nicklas Nordborg
fixed: (In [4876]) Fixes #1288: Tables doesn't indicate if there is a filter …
8:08 AM Ticket #1288 (Tables doesn't indicate if there is a filter on a property that ...) updated by Nicklas Nordborg
Status, Owner changed
8:08 AM Ticket #1288 (Tables doesn't indicate if there is a filter on a property that ...) created by Nicklas Nordborg
If you filter a table manually there is a small "filter" icon …

Apr 2, 2009:

1:59 PM Changeset [4875] by Nicklas Nordborg
Fixes #1287: Make it possible to update an extension to another …
1:59 PM Ticket #1287 (Make it possible to update an extension to another extension point) closed by Nicklas Nordborg
fixed: (In [4875]) Fixes #1287: Make it possible to update an extension to …
1:56 PM Ticket #1287 (Make it possible to update an extension to another extension point) updated by Nicklas Nordborg
Status, Owner changed
1:56 PM Ticket #1287 (Make it possible to update an extension to another extension point) created by Nicklas Nordborg
There is currently a problem if an update is made to a registered …
12:40 PM Ticket #1286 (Add support of id-base attribute to extension xml files) closed by Nicklas Nordborg
fixed: (In [4874]) Fixes #1286: Add support of id-base attribute to extension …
12:40 PM Changeset [4874] by Nicklas Nordborg
Fixes #1286: Add support of id-base attribute to extension xml files
10:58 AM Changeset [4873] by Martin Svensson
Fixes #1274 Disable/hide "Validate" and "Extract metadata" options on …
10:58 AM Ticket #1274 (Disable/hide "Validate" and "Extract metadata" options on the "Data ...) closed by Martin Svensson
fixed: (In [4873]) Fixes #1274 Disable/hide "Validate" and "Extract metadata" …
9:26 AM Ticket #1286 (Add support of id-base attribute to extension xml files) updated by Nicklas Nordborg
Owner, Status changed
9:26 AM Ticket #1286 (Add support of id-base attribute to extension xml files) created by Nicklas Nordborg
It would be practical to be able to define a top-level 'id-base' …
9:22 AM Ticket #1271 (Add extension points to all toolbars) updated by Nicklas Nordborg
(In [4872]) References #1271: Add extension points to all toolbars …
9:22 AM Changeset [4872] by Nicklas Nordborg
References #1271: Add extension points to all toolbars Added …

Apr 1, 2009:

2:58 PM Changeset [4871] by Nicklas Nordborg
References #1271: Add extension points to all toolbars Added …
2:58 PM Ticket #1271 (Add extension points to all toolbars) updated by Nicklas Nordborg
(In [4871]) References #1271: Add extension points to all toolbars …
1:39 PM Ticket #1271 (Add extension points to all toolbars) updated by Nicklas Nordborg
(In [4870]) References #1271: Add extension points to all toolbars …
1:38 PM Changeset [4870] by Nicklas Nordborg
References #1271: Add extension points to all toolbars Infrastructure …
9:16 AM DownloadPage edited by Jari Häkkinen
No need to leave non-linked package names (diff)
9:02 AM Ticket #1274 (Disable/hide "Validate" and "Extract metadata" options on the "Data ...) updated by Martin Svensson
Status, Owner changed
8:27 AM DownloadPage edited by Martin Svensson
Updated the download table; removed older versions(2.4.6 or older) and … (diff)

Mar 31, 2009:

2:21 PM Changeset [4869] by Martin Svensson
Fixes #1281 Change display-format of Biowell coordinates.
2:21 PM Ticket #1281 (Change display-format of Biowell coordinates) closed by Martin Svensson
fixed: (In [4869]) Fixes #1281 Change display-format of Biowell coordinates.
1:54 PM Ticket #1270 (Online editing of text files) updated by Nicklas Nordborg
(In [4868]) References #1270: Online editing of text files Forgot to …
1:54 PM Changeset [4868] by Nicklas Nordborg
References #1270: Online editing of text files Forgot to add the icon.
1:50 PM Ticket #1271 (Add extension points to all toolbars) updated by Nicklas Nordborg
Status, Owner changed
1:23 PM Changeset [4867] by Nicklas Nordborg
Fixes #1270: Online editing of text files
1:23 PM Ticket #1270 (Online editing of text files) closed by Nicklas Nordborg
fixed: (In [4867]) Fixes #1270: Online editing of text files
1:13 PM Ticket #1285 (MeV TDMS file creation problem) closed by Jari Häkkinen
invalid: Moved to http://baseplugins.thep.lu.se/ticket/194
12:59 PM Ticket #1285 (MeV TDMS file creation problem) updated by Nicklas Nordborg
This ticket should be moved to MeV Launcher on the BASE plug-ins site. …
12:30 PM tdms_creation_error.png attached to Ticket #1285 by Jari Häkkinen
12:30 PM Ticket #1285 (MeV TDMS file creation problem) created by Jari Häkkinen
I think this issue belongs to BASE core/web. I am using the brilliant …
9:36 AM Ticket #1281 (Change display-format of Biowell coordinates) updated by Martin Svensson
Status changed
9:36 AM Changeset [4866] by Martin Svensson
Fixes #1282 Change display-format of well coordinates.
9:36 AM Ticket #1282 (Change display-format of well coordinates) closed by Martin Svensson
fixed: (In [4866]) Fixes #1282 Change display-format of well coordinates.
9:31 AM Ticket #1284 (Viev and download icons for file should show file size) closed by Nicklas Nordborg
fixed: (In [4865]) Fixes #1284: Viev and download icons for file should show …
9:31 AM Changeset [4865] by Nicklas Nordborg
Fixes #1284: Viev and download icons for file should show file size

Mar 30, 2009:

7:38 PM Ticket #1284 (Viev and download icons for file should show file size) created by Nicklas Nordborg
There are a lot of places in the BASE web interface where …
6:06 PM Ticket #1283 (Table exporter refuses to start if download immediately is disabled) updated by Jari Häkkinen
Description changed
5:40 PM Ticket #1283 (Table exporter refuses to start if download immediately is disabled) updated by Jari Häkkinen
I suppose that the "Allow immediate execution" must exist for the …
4:48 PM Ticket #1283 (Table exporter refuses to start if download immediately is disabled) closed by Nicklas Nordborg
invalid: The table exporter must always be executed immediately, since it …
3:46 PM Ticket #1283 (Table exporter refuses to start if download immediately is disabled) created by Jari Häkkinen
... even if a target file name is selected. The plug-in displays …
9:29 AM Milestone BASE 2.11 completed
This milestone will target performance issues.
9:18 AM Changeset [4864] by Nicklas Nordborg
Merged pre-2.11 changes to the trunk.
9:07 AM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.11 (diff)
9:03 AM Changeset [4863] by Nicklas Nordborg
Changes for future release 2.11.1
8:49 AM Changeset [4862] by Nicklas Nordborg
Tagging version 2.11
8:48 AM Changeset [4861] by Nicklas Nordborg
Preparing release 2.11
8:30 AM ReleaseProcedure edited by Nicklas Nordborg
Removed steps including copyright updates, since we are never doing … (diff)
8:25 AM Ticket #1280 (Versioned annotations of reporters) updated by Nicklas Nordborg
I don't think this ticket requires a BASE 3 no matter what technical …

Mar 27, 2009:

3:45 PM Changeset [4860] by Martin Svensson
References #1282 Use WellCoordinateFormatter to view row as a …
3:45 PM Ticket #1282 (Change display-format of well coordinates) updated by Martin Svensson
(In [4860]) References #1282 Use WellCoordinateFormatter to view row …
2:55 PM Ticket #1282 (Change display-format of well coordinates) updated by Nicklas Nordborg
Type changed
2:55 PM Ticket #1270 (Online editing of text files) updated by Nicklas Nordborg
Status, Owner changed
2:23 PM Changeset [4859] by Nicklas Nordborg
Fixes #1273: Make it easier to develop plug-ins and extensions as a …
2:23 PM Ticket #1273 (Make it easier to develop plug-ins and extensions as a single package) closed by Nicklas Nordborg
fixed: (In [4859]) Fixes #1273: Make it easier to develop plug-ins and …
1:55 PM Ticket #1282 (Change display-format of well coordinates) updated by Martin Svensson
Status changed
1:55 PM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) updated by Martin Svensson
This ticket is split into two sub tickets * Array LIMS ticket …
1:52 PM Ticket #1282 (Change display-format of well coordinates) created by Martin Svensson
The format of how well(array LIMS) coordinates are displayed should be …
1:49 PM Ticket #1281 (Change display-format of Biowell coordinates) created by Martin Svensson
The format of how biowell coordinates are displayed should be like …
12:59 PM Ticket #1273 (Make it easier to develop plug-ins and extensions as a single package) updated by Nicklas Nordborg
Owner, Status changed
12:57 PM Changeset [4858] by Nicklas Nordborg
References #1266, #1272: Bioplate coordinates are numbers but it would …
12:57 PM Tickets #1272,​1266 batch updated by Nicklas Nordborg
(In [4858]) References #1266, #1272: Bioplate coordinates are numbers …
12:49 PM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) updated by Martin Svensson
Owner, Status changed
12:47 PM Changeset [4857] by Nicklas Nordborg
Fixes #1259: Exporting spot data (with table exporter): Bioassay …
12:47 PM Ticket #1259 (Exporting spot data (with table exporter): Bioassay column is ...) closed by Nicklas Nordborg
fixed: (In [4857]) Fixes #1259: Exporting spot data (with table exporter): …
11:35 AM Ticket #1280 (Versioned annotations of reporters) updated by Jari Häkkinen
Replying to nicklas: > This will of course not be able to …
11:17 AM Ticket #1259 (Exporting spot data (with table exporter): Bioassay column is ...) updated by Nicklas Nordborg
Status, Owner changed
11:14 AM Changeset [4856] by Nicklas Nordborg
References #1266, #1272: Bioplate coordinates are numbers but it would …
11:14 AM Tickets #1272,​1266 batch updated by Nicklas Nordborg
(In [4856]) References #1266, #1272: Bioplate coordinates are numbers …
11:11 AM Changeset [4855] by Nicklas Nordborg
Fixes #1272: Add support for using Formatters to SimpleExporter (aka. …
11:11 AM Ticket #1272 (Add support for using Formatters to SimpleExporter (aka. table exporter)) closed by Nicklas Nordborg
fixed: (In [4855]) Fixes #1272: Add support for using Formatters to …
10:54 AM Ticket #1280 (Versioned annotations of reporters) updated by Nicklas Nordborg
This will of course not be able to do without negative impact of …
9:53 AM Ticket #1280 (Versioned annotations of reporters) created by Jari Häkkinen
In BASE today there is only one set of reporter annotations but it …

Mar 26, 2009:

4:11 PM Ticket #1279 (Mark directories for removal when "parent" item is marked for removal) created by Jari Häkkinen
Related to ticket:1149 Some plug-ins create directories and files …
2:08 PM Ticket #1276 (Edit annotationtype - Moving unit from 'do not use' to 'Use units' ...) closed by Martin Svensson
fixed: (In [4854]) Fixes #1276 Edit annotationtype - Moving unit from 'do not …
2:08 PM Changeset [4854] by Martin Svensson
Fixes #1276 Edit annotationtype - Moving unit from 'do not use' to …
1:51 PM Ticket #1277 (Export button on Biowells list page leads to non-existing url) updated by Nicklas Nordborg
Milestone changed
1:19 PM Changeset [4853] by Nicklas Nordborg
Fixes #1278: Bioplate single-item page has a left-over toolbar button
1:19 PM Ticket #1278 (Bioplate single-item page has a left-over toolbar button) closed by Nicklas Nordborg
fixed: (In [4853]) Fixes #1278: Bioplate single-item page has a left-over …
1:17 PM Ticket #1278 (Bioplate single-item page has a left-over toolbar button) created by Nicklas Nordborg
The button "Bioplate act" doesn't do anything and should be removed.
1:16 PM Ticket #1277 (Export button on Biowells list page leads to non-existing url) closed by Nicklas Nordborg
fixed: (In [4852]) Fixes #1277: Export button on Biowells list page leads to …
1:16 PM Changeset [4852] by Nicklas Nordborg
Fixes #1277: Export button on Biowells list page leads to non-existing …
1:07 PM Ticket #1277 (Export button on Biowells list page leads to non-existing url) updated by Nicklas Nordborg
Status, Owner changed
1:07 PM Ticket #1277 (Export button on Biowells list page leads to non-existing url) created by Nicklas Nordborg
1. Navigate to a Bioplate and select the Biowells tab. 2. Click on …
12:58 PM Changeset [4851] by Nicklas Nordborg
Remove debug output.
12:25 PM Ticket #1272 (Add support for using Formatters to SimpleExporter (aka. table exporter)) updated by Nicklas Nordborg
Status, Priority, Owner changed
10:53 AM Changeset [4850] by Nicklas Nordborg
References #1240: Implement "lazy loading" in the generic "item …
10:53 AM Ticket #1240 (Implement "lazy loading" in the generic "item overview") updated by Nicklas Nordborg
(In [4850]) References #1240: Implement "lazy loading" in the generic …
10:50 AM Changeset [4849] by Nicklas Nordborg
References #1240: Implement "lazy loading" in the generic "item …
10:50 AM Ticket #1240 (Implement "lazy loading" in the generic "item overview") updated by Nicklas Nordborg
(In [4849]) References #1240: Implement "lazy loading" in the generic …
9:52 AM Ticket #1276 (Edit annotationtype - Moving unit from 'do not use' to 'Use units' ...) created by Martin Svensson
Error message is: Object doesn't support this property or method
9:12 AM Ticket #1275 (Item overview doesn't load array slide associated with hybridization ...) closed by Nicklas Nordborg
fixed: (In [4848]) Fixes #1275: Item overview doesn't load array slide …
9:12 AM Changeset [4848] by Nicklas Nordborg
Fixes #1275: Item overview doesn't load array slide associated with …
9:08 AM Ticket #1275 (Item overview doesn't load array slide associated with hybridization ...) updated by Nicklas Nordborg
Status, Owner changed
9:07 AM Ticket #1275 (Item overview doesn't load array slide associated with hybridization ...) created by Nicklas Nordborg
I think it has to do with the check of the parent item type, which in …
9:07 AM Ticket #1240 (Implement "lazy loading" in the generic "item overview") updated by Martin Svensson
(In [4847]) References #1240. Do not use lazy-icons in the item-tree …
9:07 AM Changeset [4847] by Martin Svensson
References #1240. Do not use lazy-icons in the item-tree when a node's …
8:07 AM Ticket #1274 (Disable/hide "Validate" and "Extract metadata" options on the "Data ...) created by Nicklas Nordborg
On the "Data files" tab in the edit dialog of raw bioassays and array …
8:02 AM Ticket #1273 (Make it easier to develop plug-ins and extensions as a single package) created by Nicklas Nordborg
This is not so streamlined at the moment. Since extensions are …

Mar 25, 2009:

10:01 PM Ticket #1259 (Exporting spot data (with table exporter): Bioassay column is ...) updated by Nicklas Nordborg
Status, Owner changed
10:01 PM Ticket #1259 (Exporting spot data (with table exporter): Bioassay column is ...) reopened by Nicklas Nordborg
10:01 PM Ticket #1272 (Add support for using Formatters to SimpleExporter (aka. table exporter)) updated by Nicklas Nordborg
Yes. I am re-opening #1259.
9:11 PM Ticket #1272 (Add support for using Formatters to SimpleExporter (aka. table exporter)) updated by Jari Häkkinen
Would this also target the issue discussed in ticket:1259?
8:34 PM Ticket #1128 (Export of child items) updated by Nicklas Nordborg
Milestone, Summary changed
See ticket #1272 for a possible way to solve this issue.
8:32 PM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) updated by Nicklas Nordborg
Milestone changed
See ticket #1272 for a possible way to solve the table export issue.
8:30 PM Ticket #1272 (Add support for using Formatters to SimpleExporter (aka. table exporter)) created by Nicklas Nordborg
The typical use case for a Formatter is to format a raw value into a …
8:10 PM Ticket #1271 (Add extension points to all toolbars) created by Nicklas Nordborg
The extension system that was developed some time ago for BASE can be …
7:57 PM Ticket #1270 (Online editing of text files) created by Nicklas Nordborg
Add a function that allows online editing of text files on the BASE …
2:14 PM Changeset [4846] by Nicklas Nordborg
Changes for future release 2.12
2:13 PM Changeset [4845] by Nicklas Nordborg
Forking new minor version 2.11 branch
1:23 PM Changeset [4844] by Nicklas Nordborg
Fixes #1269: Biomaterial batch importers should use alphanumeric …
1:23 PM Ticket #1269 (Biomaterial batch importers should use alphanumeric coordinate system ...) closed by Nicklas Nordborg
fixed: (In [4844]) Fixes #1269: Biomaterial batch importers should use …
1:12 PM Ticket #1243 (Fix TestBioAssaySetExporter and include it in TestAll) updated by Nicklas Nordborg
(In [4843]) References #1243: Fix TestBioAssaySetExporter and include …
1:12 PM Changeset [4843] by Nicklas Nordborg
References #1243: Fix TestBioAssaySetExporter and include it in …
11:27 AM Ticket #1269 (Biomaterial batch importers should use alphanumeric coordinate system ...) updated by Nicklas Nordborg
Owner, Status changed
11:27 AM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) updated by Nicklas Nordborg
Batch importer changes now has it's own ticket #1269. Since it is a …
11:25 AM Ticket #1269 (Biomaterial batch importers should use alphanumeric coordinate system ...) created by Nicklas Nordborg
See #1266 for a background. I think this needs to go in as soon as …
10:02 AM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) updated by Jari Häkkinen
Replying to nicklas: > > The same system is used for …
9:54 AM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) updated by Nicklas Nordborg
> The same system is used for plates in the array lims section. This …
8:57 AM Ticket #1240 (Implement "lazy loading" in the generic "item overview") closed by Martin Svensson
fixed: (In [4842]) Fixes #1240. Implement "lazy loading" in the generic "item …
8:57 AM Changeset [4842] by Martin Svensson
Fixes #1240. Implement "lazy loading" in the generic "item overview".
8:42 AM Ticket #1238 (Check performance of BioAssaySetExporter) updated by Nicklas Nordborg
(In [4841]) References #1238: Check performance of BioAssaySetExporter
8:42 AM Changeset [4841] by Nicklas Nordborg
References #1238: Check performance of BioAssaySetExporter Fixes …

Mar 24, 2009:

3:55 PM Changeset [4840] by Martin Svensson
References #1240. The functionallity in the webclient is done. The …
3:55 PM Ticket #1240 (Implement "lazy loading" in the generic "item overview") updated by Martin Svensson
(In [4840]) References #1240. The functionallity in the webclient is …
3:15 PM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) updated by Jari Häkkinen
96-plates have [A..H,1..12] 384-plates have [A..P,1..24] 1536 is …
3:14 PM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) updated by Jari Häkkinen
Replying to jari: > For consistency we should make the …
1:27 PM Ticket #1268 (Can't use filter on list page until it has been loaded completely) updated by Nicklas Nordborg
Priority, Milestone changed
1:27 PM Changeset [4839] by Nicklas Nordborg
Fixes #1268: Can't use filter on list page until it has been loaded …
1:27 PM Ticket #1268 (Can't use filter on list page until it has been loaded completely) closed by Nicklas Nordborg
fixed: (In [4839]) Fixes #1268: Can't use filter on list page until it has …
1:10 PM Ticket #1242 (Generate <img> tag for spot images with a class attribute) closed by Nicklas Nordborg
fixed: (In [4838]) Fixes #1242: Generate <img> tag for spot images with a …
1:10 PM Changeset [4838] by Nicklas Nordborg
Fixes #1242: Generate <img> tag for spot images with a class attribute …
1:10 PM Ticket #1242 (Generate <img> tag for spot images with a class attribute) updated by Nicklas Nordborg
Summary, Owner, Milestone, Priority, Status changed
12:55 PM Ticket #1232 (Long running getAllInheritedAnnotations query) closed by Nicklas Nordborg
worksforme
12:25 PM Ticket #1232 (Long running getAllInheritedAnnotations query) updated by Nicklas Nordborg
I am not able to reproduce this on either PostgreSQL 8.3.6 or MySQL …
11:40 AM Ticket #1232 (Long running getAllInheritedAnnotations query) updated by Nicklas Nordborg
Status changed
11:40 AM Ticket #1232 (Long running getAllInheritedAnnotations query) updated by Nicklas Nordborg
Status, Owner changed
11:24 AM Changeset [4837] by Nicklas Nordborg
Fixes #1265: Hybridization batch importer should set "number of …
11:24 AM Ticket #1265 (Hybridization batch importer should set "number of arrays" automatically) closed by Nicklas Nordborg
fixed: (In [4837]) Fixes #1265: Hybridization batch importer should set …
11:10 AM Ticket #1264 (Raw bioassay batch importer should set array design automatically) closed by Nicklas Nordborg
fixed: (In [4836]) Fixes #1264: Raw bioassay batch importer should set array …
11:10 AM Changeset [4836] by Nicklas Nordborg
Fixes #1264: Raw bioassay batch importer should set array design …
10:39 AM Ticket #1264 (Raw bioassay batch importer should set array design automatically) updated by Nicklas Nordborg
Status, Owner, Milestone changed
10:39 AM Ticket #1265 (Hybridization batch importer should set "number of arrays" automatically) updated by Nicklas Nordborg
Status, Owner, Milestone changed
9:57 AM Ticket #1268 (Can't use filter on list page until it has been loaded completely) updated by Nicklas Nordborg
Summary changed
No page will be fully functional until it has been completely loaded. …
9:26 AM not_logged_in.png attached to Ticket #1268 by Jari Häkkinen
9:26 AM Ticket #1268 (Can't use filter on list page until it has been loaded completely) created by Jari Häkkinen
... and as a consequence I may get the message as displayed in the …
9:22 AM Changeset [4835] by Nicklas Nordborg
Merged patch release 2.10.1 to the trunk.
9:16 AM Changeset [4834] by Nicklas Nordborg
Changes for future release 2.10.2
9:15 AM Milestone BASE 2.10.1 completed
Bug fixes for 2.10. Revision Log: log:branches/2.10-stable@4787:4833
9:15 AM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.10.1 (diff)
8:55 AM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) updated by Jari Häkkinen
For consistency we should make the same change to the array LIMS …
8:49 AM Ticket #1253 (plainMatrixExport documentation needs to be clarified) updated by Jari Häkkinen
Replying to nicklas: > Hmm.. just checked the (Javadoc) …
8:48 AM Changeset [4833] by Nicklas Nordborg
Tagging version 2.10.1
8:48 AM Changeset [4832] by Nicklas Nordborg
Preparing release 2.10.1
8:35 AM Ticket #1253 (plainMatrixExport documentation needs to be clarified) closed by Nicklas Nordborg
invalid: Hmm.. just checked the (Javadoc) documentation. It says: The row is …
8:28 AM Ticket #1260 (Incorrect title on import dialog when opened from array slide and ...) closed by Nicklas Nordborg
fixed: (In [4831]) Fixes #1260: Incorrect title on import dialog when opened …
8:28 AM Changeset [4831] by Nicklas Nordborg
Fixes #1260: Incorrect title on import dialog when opened from array …

Mar 23, 2009:

6:11 PM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) updated by Nicklas Nordborg
The same system is used for plates in the array lims section. Does …
6:08 PM Ticket #1267 (The nice colourful display of ratios in experiment explorer should ...) updated by Jari Häkkinen
Amazing ... I should read the nice manual! Thanks.
6:00 PM Ticket #1267 (The nice colourful display of ratios in experiment explorer should ...) closed by Nicklas Nordborg
worksforme: This can be configured on the formula.
5:26 PM Ticket #1267 (The nice colourful display of ratios in experiment explorer should ...) created by Jari Häkkinen
I have users requesting the colour square also for M values. Is this …
5:24 PM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) created by Jari Häkkinen
Bioplate row/col coordinates are numbers [0..n,0..m] whereas the …
4:46 PM Changeset [4830] by Martin Svensson
References #1240. Some adjustments on menuitems' tooltip- and cursor- …
4:46 PM Ticket #1240 (Implement "lazy loading" in the generic "item overview") updated by Martin Svensson
(In [4830]) References #1240. Some adjustments on menuitems' tooltip- …
3:36 PM Ticket #1261 (Global cache for static data) closed by Nicklas Nordborg
fixed
3:28 PM Changeset [4829] by Nicklas Nordborg
Fixes #903: Experiment Explorer is slow Store list of position in the …
3:28 PM Ticket #903 (Experiment Explorer is slow) closed by Nicklas Nordborg
fixed: (In [4829]) Fixes #903: Experiment Explorer is slow Store list of …
1:10 PM Changeset [4828] by Nicklas Nordborg
Fixes #1262: Overview and correction factor plots should use the …
1:10 PM Ticket #1262 (Overview and correction factor plots should use the static cache) closed by Nicklas Nordborg
fixed: (In [4828]) Fixes #1262: Overview and correction factor plots should …
1:10 PM Ticket #1261 (Global cache for static data) updated by Nicklas Nordborg
Description changed
1:09 PM Changeset [4827] by Nicklas Nordborg
References #1261: Global cache for static data The cache is now …
1:09 PM Ticket #1261 (Global cache for static data) updated by Nicklas Nordborg
(In [4827]) References #1261: Global cache for static data The cache …

Mar 21, 2009:

11:45 AM Ticket #1263 (Set some values automatically when creating items with the batch importers) closed by Nicklas Nordborg
duplicate: Part i) of this ticket is now replaced by #1264 and #1265. Part ii) …
11:44 AM Ticket #1265 (Hybridization batch importer should set "number of arrays" automatically) created by Nicklas Nordborg
This should happen in a similar way as in the GUI if: * The value …
11:42 AM Ticket #1264 (Raw bioassay batch importer should set array design automatically) created by Nicklas Nordborg
This should happen in a similar way as in the GUI if: * No array …
11:39 AM Ticket #1263 (Set some values automatically when creating items with the batch importers) updated by Nicklas Nordborg
> the total number of arrays in the hybridization can be set during …

Mar 20, 2009:

10:03 PM Ticket #1263 (Set some values automatically when creating items with the batch importers) updated by Jari Häkkinen
Replying to nicklas: > i) This assumes that a scan has …
8:15 PM Ticket #1263 (Set some values automatically when creating items with the batch importers) updated by Nicklas Nordborg
i) This assumes that a scan has been given and it should not be any …
8:08 PM Changeset [4826] by Nicklas Nordborg
Added missing file
4:33 PM Ticket #1263 (Set some values automatically when creating items with the batch importers) created by Jari Häkkinen
In the tickets referenced below some smartness was added to the GUI …
3:41 PM Ticket #1262 (Overview and correction factor plots should use the static cache) updated by Nicklas Nordborg
(In [4825]) References #1262: Overview and correction factor plots …
3:41 PM Changeset [4825] by Nicklas Nordborg
References #1262: Overview and correction factor plots should use the …
3:40 PM Changeset [4824] by Nicklas Nordborg
References #1261: Global cache for static data A prototype …
3:40 PM Ticket #1261 (Global cache for static data) updated by Nicklas Nordborg
(In [4824]) References #1261: Global cache for static data A …
11:19 AM Ticket #1262 (Overview and correction factor plots should use the static cache) created by Nicklas Nordborg
There is no need to re-generate the plots every time a user visits the …
11:17 AM Ticket #1261 (Global cache for static data) updated by Nicklas Nordborg
Owner, Status changed
8:58 AM Ticket #1261 (Global cache for static data) created by Nicklas Nordborg
Implement a global, file-based, cache that can be used to store …
8:02 AM Ticket #1260 (Incorrect title on import dialog when opened from array slide and ...) updated by Nicklas Nordborg
Summary, Priority changed

Mar 19, 2009:

4:53 PM Ticket #1260 (Incorrect title on import dialog when opened from array slide and ...) updated by Jari Häkkinen
Replying to nicklas: > I think it is only an icorrect …
4:08 PM Changeset [4823] by Martin Svensson
References #1240. The node-icons are getting updated when expanding …
4:08 PM Ticket #1240 (Implement "lazy loading" in the generic "item overview") updated by Martin Svensson
(In [4823]) References #1240. The node-icons are getting updated when …
3:40 PM Ticket #1260 (Incorrect title on import dialog when opened from array slide and ...) updated by Nicklas Nordborg
I think it is only an icorrect title... On my installation it is the …
3:28 PM Ticket #1260 (Incorrect title on import dialog when opened from array slide and ...) created by Jari Häkkinen
Clicking of the import button starts the hybridization importer?? …
2:06 PM Changeset [4822] by Nicklas Nordborg
Fixes #1255: Make annotation importer handle units
2:06 PM Ticket #1255 (Make annotation importer handle units) closed by Nicklas Nordborg
fixed: (In [4822]) Fixes #1255: Make annotation importer handle units
9:53 AM Ticket #1255 (Make annotation importer handle units) updated by Nicklas Nordborg
Status, Owner, Milestone changed
9:13 AM Ticket #1216 (Annotation importer selects "wrong" configuration) closed by Nicklas Nordborg
worksforme: Closing this ticket since no feedback has been provided.
9:12 AM Ticket #1079 (Raw data import takes very long time to fail when user exceeds quota) closed by Nicklas Nordborg
invalid: Closing this ticket since no feedback has been provided.
9:12 AM Ticket #1195 (Problem when importing negative values for annotations with float as ...) closed by Nicklas Nordborg
invalid: Closing this ticket since no feedback has been provided.
9:05 AM Ticket #1256 (Query used in exportPlainMatrix method in BioAssaySetExporter must be ...) closed by Nicklas Nordborg
wontfix: Since it is a bad idea to repeat the query I think the core should not …
9:02 AM Ticket #1258 (New export format for bioassay set spot data) updated by Nicklas Nordborg
Summary changed

Mar 18, 2009:

3:42 PM Changeset [4821] by Nicklas Nordborg
References #1238: Check performance of BioAssaySetExporter Need …
3:42 PM Ticket #1238 (Check performance of BioAssaySetExporter) updated by Nicklas Nordborg
(In [4821]) References #1238: Check performance of BioAssaySetExporter
2:18 PM Changeset [4820] by Nicklas Nordborg
References #1238: Check performance of BioAssaySetExporter Fixes a …
2:18 PM Ticket #1238 (Check performance of BioAssaySetExporter) updated by Nicklas Nordborg
(In [4820]) References #1238: Check performance of BioAssaySetExporter
2:10 PM Changeset [4819] by Nicklas Nordborg
References #1248: Long running job may cause a timeout on session on …
2:10 PM Ticket #1248 (Long running job may cause a timeout on session on internal job queue) updated by Nicklas Nordborg
(In [4819]) References #1248: Long running job may cause a timeout on …
12:39 PM Ticket #903 (Experiment Explorer is slow) updated by Nicklas Nordborg
So, a decision needs to be made. Should we have an index on the …

Mar 17, 2009:

3:41 PM Ticket #903 (Experiment Explorer is slow) updated by Nicklas Nordborg
Results from 'grey' # = Number of assays R = No index I = With index …
11:44 AM Ticket #1244 (Incorrect documentation in MenuItemAction) closed by Nicklas Nordborg
fixed: (In [4818]) Fixes #1244: Incorrect documentation in MenuItemAction
11:44 AM Changeset [4818] by Nicklas Nordborg
Fixes #1244: Incorrect documentation in MenuItemAction
10:53 AM Ticket #1251 (Improvements of the 'performance' test program) closed by Nicklas Nordborg
fixed
10:53 AM Ticket #1238 (Check performance of BioAssaySetExporter) closed by Nicklas Nordborg
fixed
9:07 AM Changeset [4817] by Nicklas Nordborg
References #903: Experiment Explorer is slow Testing the idea of …
9:07 AM Ticket #903 (Experiment Explorer is slow) updated by Nicklas Nordborg
(In [4817]) References #903: Experiment Explorer is slow Testing the …

Mar 16, 2009:

3:15 PM Ticket #1240 (Implement "lazy loading" in the generic "item overview") updated by Martin Svensson
(In [4816]) References #1240 The item-overview tree is now using lazy …
3:15 PM Changeset [4816] by Martin Svensson
References #1240 The item-overview tree is now using lazy loading. The …
2:57 PM Ticket #903 (Experiment Explorer is slow) updated by Nicklas Nordborg
I have no measured times on this by it feels a bit better. I would say …
2:41 PM Changeset [4815] by Nicklas Nordborg
References #903: Experiment Explorer is slow Testing the idea of …
2:41 PM Ticket #903 (Experiment Explorer is slow) updated by Nicklas Nordborg
(In [4815]) References #903: Experiment Explorer is slow Testing the …
2:01 PM Ticket #903 (Experiment Explorer is slow) updated by Nicklas Nordborg
Regarding the first reporter/position caching query, I think there are …
1:40 PM Ticket #903 (Experiment Explorer is slow) updated by Nicklas Nordborg
I'll continue by checking the two remaining queries. The first query …
11:28 AM Ticket #1257 (Use multiple threads in Lowess) updated by Nicklas Nordborg
The debugging on 'grey' showed that the initial statement that the …
11:11 AM Ticket #1258 (New export format for bioassay set spot data) updated by Jari Häkkinen
Replying to jari: > I suppose the BASEfile can do the …
9:39 AM Ticket #1257 (Use multiple threads in Lowess) closed by Nicklas Nordborg
fixed: (In [4814]) Fixes #1257: Use multiple threads in Lowess Removed debug …
9:39 AM Changeset [4814] by Nicklas Nordborg
Fixes #1257: Use multiple threads in Lowess Removed debug output.
9:29 AM Ticket #1259 (Exporting spot data (with table exporter): Bioassay column is ...) updated by Nicklas Nordborg
The user can't know that.
9:27 AM Ticket #1259 (Exporting spot data (with table exporter): Bioassay column is ...) updated by Jari Häkkinen
Replying to nicklas: > No it not possible for the exporter …
9:24 AM Ticket #1257 (Use multiple threads in Lowess) updated by Nicklas Nordborg
(In [4813]) References #1257: Use multiple threads in Lowess Now uses …
9:24 AM Changeset [4813] by Nicklas Nordborg
References #1257: Use multiple threads in Lowess Now uses …
9:09 AM Ticket #1259 (Exporting spot data (with table exporter): Bioassay column is ...) closed by Nicklas Nordborg
wontfix: No it not possible for the exporter to have this information. It …
8:59 AM Ticket #1258 (New export format for bioassay set spot data) updated by Jari Häkkinen
Component changed
I suppose the BASEfile can do the trick, however there is the header …
8:57 AM Ticket #1259 (Exporting spot data (with table exporter): Bioassay column is ...) created by Jari Häkkinen
How do I as a user know which bioassay 1, 2, 3 and so on corresponds …
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