Timeline



Jan 16, 2009:

1:08 PM Ticket #1232 (Long running getAllInheritedAnnotations query) created by base
The query that retrieves all inherited (directly and indirectly) …

Jan 15, 2009:

4:32 PM Changeset [4730] by Martin Svensson
References #979 A labeledextract's or extract's bioplate/biowell are …
4:32 PM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4730]) References #979 A labeledextract's or extract's …
10:42 AM WikiStart edited by Jari Häkkinen
Added information on how to cite BASE. (diff)

Jan 14, 2009:

4:22 PM Changeset [4729] by Martin Svensson
References #979 Removed edit and view pages for biowells because they …
4:22 PM Ticket #979 (Biomaterial LIMS) updated by Martin Svensson
(In [4729]) References #979 Removed edit and view pages for biowells …
11:54 AM Ticket #1193 (Generic tree-like item overview) updated by Nicklas Nordborg
Owner, Status changed
9:25 AM Ticket #1192 (Use biomaterial lists as filters) closed by Nicklas Nordborg
fixed: (In [4728]) Fixes #1192: Use biomaterial lists as filters
9:25 AM Changeset [4728] by Nicklas Nordborg
Fixes #1192: Use biomaterial lists as filters

Jan 13, 2009:

2:14 PM Ticket #1192 (Use biomaterial lists as filters) updated by Nicklas Nordborg
Status, Owner changed
1:11 PM Changeset [4727] by Nicklas Nordborg
Typo.
1:09 PM Changeset [4726] by Nicklas Nordborg
Fixes #1231: HTML.encodeTags() should not allow attributes in "safe" tags
1:09 PM Ticket #1231 (HTML.encodeTags() should not allow attributes in "safe" tags) closed by Nicklas Nordborg
fixed: (In [4726]) Fixes #1231: HTML.encodeTags() should not allow attributes …
1:08 PM Ticket #1231 (HTML.encodeTags() should not allow attributes in "safe" tags) updated by Nicklas Nordborg
Owner, Status changed
1:08 PM Ticket #1231 (HTML.encodeTags() should not allow attributes in "safe" tags) created by Nicklas Nordborg
This can be security issue that opens up for scripting attacks since …
1:05 PM Ticket #1228 (News list should encode text on the "Home" page) closed by Nicklas Nordborg
fixed: (In [4725]) Fixes #1228: News list should encode text on the "Home" page
1:04 PM Changeset [4725] by Nicklas Nordborg
Fixes #1228: News list should encode text on the "Home" page
11:58 AM Ticket #1228 (News list should encode text on the "Home" page) updated by Nicklas Nordborg
Milestone, Owner, Status, Type, Summary changed
11:56 AM Changeset [4724] by Nicklas Nordborg
Fixes #1230: Using "Browse" in Packed file exporter results in an …
11:56 AM Ticket #1230 (Using "Browse" in Packed file exporter results in an empty compressed file) closed by Nicklas Nordborg
fixed: (In [4724]) Fixes #1230: Using "Browse" in Packed file exporter …
9:59 AM Ticket #1229 ("Save as" parameter in plug-in dialogues can be impoved) updated by Jari Häkkinen
Replying to nicklas: > Ah.... I guess you are not logged …
9:33 AM Ticket #1230 (Using "Browse" in Packed file exporter results in an empty compressed file) updated by Nicklas Nordborg
Description, Owner, Status changed
9:20 AM Changeset [4723] by Nicklas Nordborg
References #1190: API and interface for creating biomaterial lists …
9:20 AM Ticket #1190 (API and interface for creating biomaterial lists) updated by Nicklas Nordborg
(In [4723]) References #1190: API and interface for creating …

Jan 12, 2009:

2:55 PM Ticket #1229 ("Save as" parameter in plug-in dialogues can be impoved) updated by Nicklas Nordborg
> is created one step up from what would be expected. Ah.... I guess …
2:48 PM Ticket #1229 ("Save as" parameter in plug-in dialogues can be impoved) updated by Nicklas Nordborg
I am still not able to reproduce this. I only get the problem …
2:25 PM Ticket #1229 ("Save as" parameter in plug-in dialogues can be impoved) updated by Jari Häkkinen
Replying to nicklas: > Is the error really related to if a …
11:26 AM Ticket #1229 ("Save as" parameter in plug-in dialogues can be impoved) updated by Nicklas Nordborg
> I'll add this as a separate ticket. Added as #1230.
11:25 AM Ticket #1230 (Using "Browse" in Packed file exporter results in an empty compressed file) created by Nicklas Nordborg
1. Go to the File manager (View -> Files) 2. Browse to a directory …
11:14 AM Ticket #1229 ("Save as" parameter in plug-in dialogues can be impoved) updated by Nicklas Nordborg
Is the error really related to if a file name is provided or not? I am …
10:36 AM Ticket #1229 ("Save as" parameter in plug-in dialogues can be impoved) created by Jari Häkkinen
Setting the 'Save as' parameter in the dialogue could be smarter. As …

Jan 9, 2009:

3:13 PM Ticket #1228 (News list should encode text on the "Home" page) updated by Jari Häkkinen
Replying to nicklas: > I think that it is how the news …
2:47 PM Ticket #1228 (News list should encode text on the "Home" page) updated by Nicklas Nordborg
I think that it is how the news items are displayed in the home page …
2:19 PM Ticket #1228 (News list should encode text on the "Home" page) created by Jari Häkkinen
The home page accepts html tags whereas the BASE login page does not. …
1:18 PM Ticket #1227 (ItemNotFoundException in Base1PluginExecuter if leaveStdin or ...) updated by Nicklas Nordborg
(In [4722]) References #1227: ItemNotFoundException in …
1:18 PM Changeset [4722] by Nicklas Nordborg
References #1227: ItemNotFoundException in Base1PluginExecuter if …
11:29 AM Changeset [4721] by Nicklas Nordborg
References #1227: ItemNotFoundException in Base1PluginExecuter if …
11:29 AM Ticket #1227 (ItemNotFoundException in Base1PluginExecuter if leaveStdin or ...) updated by Nicklas Nordborg
(In [4721]) References #1227: ItemNotFoundException in …
11:28 AM Ticket #1227 (ItemNotFoundException in Base1PluginExecuter if leaveStdin or ...) updated by Nicklas Nordborg
Owner, Status, Summary changed

Jan 8, 2009:

6:04 PM Ticket #1227 (ItemNotFoundException in Base1PluginExecuter if leaveStdin or ...) updated by Nicklas Nordborg
This happens when one of the "Leave stdin.txt" or "Leave …
3:49 PM Ticket #1227 (ItemNotFoundException in Base1PluginExecuter if leaveStdin or ...) created by Jari Häkkinen
Result files and directories are created but obviously no …
11:01 AM Changeset [4720] by Nicklas Nordborg
Merged patch release 2.9.2 to the trunk.
10:51 AM Milestone BASE 2.9.2 completed
Bug fixes for 2.9.1. Revision Log: log:branches/2.9-stable@4709:4718
10:49 AM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.9.2 (diff)
10:46 AM Changeset [4719] by Nicklas Nordborg
Changes for future release 2.9.3
9:44 AM Changeset [4718] by Nicklas Nordborg
Tagging version 2.9.2
9:43 AM Changeset [4717] by Nicklas Nordborg
Preparing release 2.9.2
9:22 AM Changeset [4716] by Nicklas Nordborg
Fixes #1225: Base1PluginExecuter crashes with "The connection has been …
9:22 AM Ticket #1225 (Base1PluginExecuter crashes with "The connection has been closed" if ...) closed by Nicklas Nordborg
fixed: (In [4716]) Fixes #1225: Base1PluginExecuter crashes with "The …
9:14 AM Ticket #1226 (The "Share new files and subdirectories automatically" option causes ...) closed by Nicklas Nordborg
fixed: (In [4714]) Fixes #1226: The "Share new files and subdirectories …
9:14 AM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) closed by Nicklas Nordborg
duplicate
9:13 AM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) reopened by Nicklas Nordborg
Ignore last comment. It belongs to ticket #1226.
9:09 AM Changeset [4715] by Nicklas Nordborg
References #1225: Base1PluginExecuter crashes with "The connection has …
9:09 AM Ticket #1225 (Base1PluginExecuter crashes with "The connection has been closed" if ...) updated by Nicklas Nordborg
(In [4715]) References #1225: Base1PluginExecuter crashes with "The …
9:00 AM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) updated by Nicklas Nordborg
Resolution changed
(In [4714]) Fixes #1126: The "Share new files and subdirectories …
9:00 AM Changeset [4714] by Nicklas Nordborg
Fixes #1126: The "Share new files and subdirectories automatically" …

Jan 7, 2009:

2:49 PM Ticket #1226 (The "Share new files and subdirectories automatically" option causes ...) updated by Nicklas Nordborg
Owner, Status changed
2:49 PM Ticket #1225 (Base1PluginExecuter crashes with "The connection has been closed" if ...) updated by Nicklas Nordborg
The other problem mentioned in the first comment has been moved to a …
2:47 PM Ticket #1225 (Base1PluginExecuter crashes with "The connection has been closed" if ...) updated by Nicklas Nordborg
Summary changed
No need to test, but ... I don't think testing 3 plug-ins can account …
2:42 PM Ticket #1225 (Base1PluginExecuter crashes with "The connection has been closed" if ...) updated by Nicklas Nordborg
(In [4713]) References #1225: Base1PluginExecuter crashes with "The …
2:42 PM Changeset [4713] by Nicklas Nordborg
References #1225: Base1PluginExecuter crashes with "The connection has …
2:35 PM Ticket #1225 (Base1PluginExecuter crashes with "The connection has been closed" if ...) updated by Jari Häkkinen
Replying to nicklas: > I have extended the test plug-in to …
2:30 PM Ticket #1226 (The "Share new files and subdirectories automatically" option causes ...) created by Nicklas Nordborg
When running a BASE1 plug-in with the Base1PluginExecuter an output …
2:26 PM Ticket #1225 (Base1PluginExecuter crashes with "The connection has been closed" if ...) updated by Jari Häkkinen
Replying to nicklas: > I cannot reproduce the same error. …
2:23 PM Ticket #1225 (Base1PluginExecuter crashes with "The connection has been closed" if ...) updated by Nicklas Nordborg
I have extended the test plug-in to also include a test that creates a …
1:17 PM Ticket #1225 (Base1PluginExecuter crashes with "The connection has been closed" if ...) updated by Nicklas Nordborg
I cannot reproduce the same error. The test plug-in (a simple plug-in …
12:39 PM Ticket #1225 (Base1PluginExecuter crashes with "The connection has been closed" if ...) created by Jari Häkkinen
This happens with several (all?) configuration on our machine. …
9:51 AM Ticket #1224 (Running two "New root bioassay set" jobs at the same time makes the ...) closed by Nicklas Nordborg
invalid: There is no problem when using the "Formula intensity calculator" …

Dec 21, 2008:

8:00 PM Ticket #1224 (Running two "New root bioassay set" jobs at the same time makes the ...) created by Jari Häkkinen
This is at least true or affymetrix. I wanted to create two new root …

Dec 19, 2008:

2:55 PM Ticket #1190 (API and interface for creating biomaterial lists) updated by Nicklas Nordborg
(In [4712]) References #1190: API and interface for creating …
2:55 PM Changeset [4712] by Nicklas Nordborg
References #1190: API and interface for creating biomaterial lists …
12:44 PM Ticket #1223 (News visible only for a selected group of users/groups/project) updated by Jari Häkkinen
Replying to nicklas: > Not backwards compatible, and I …
11:55 AM Ticket #1223 (News visible only for a selected group of users/groups/project) updated by Nicklas Nordborg
Milestone changed
Not backwards compatible, and I don't think it is a good idea. Isn't …
11:48 AM Ticket #1223 (News visible only for a selected group of users/groups/project) created by Jari Häkkinen
It would be nice to be able to create news items only visible for …

Dec 18, 2008:

7:39 PM Ticket #1221 (Error creating a direcotory) closed by Nicklas Nordborg
invalid: The error happens because the directory already exists.
7:25 PM Ticket #1222 (Document the nice batch import of raw data through experiment import button) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/test/roles/index.html#user
4:54 PM Ticket #1221 (Error creating a direcotory) created by base
I get the below stacktrace when I create a directory. However, the …
9:22 AM Changeset [4711] by Nicklas Nordborg
Merged patch release 2.9.1 to the trunk.
9:05 AM Milestone BASE 2.9.1 completed
Bug fixes for 2.9. Revision Log: log:branches/2.9-stable@4667:4709
9:05 AM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.9.1 (diff)
9:01 AM Changeset [4710] by Nicklas Nordborg
Changes for future release 2.9.2
8:43 AM Changeset [4709] by Nicklas Nordborg
Tagging version 2.9.1
8:42 AM Changeset [4708] by Nicklas Nordborg
Preparing release 2.9.1
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