Timeline



Oct 3, 2008:

4:23 PM Changeset [4559] by Martin Svensson
Fixes #1092 Add listing of child items that are the same type as the parent
4:23 PM Ticket #1092 (Add listing of child items that are the same type as the parent) closed by Martin Svensson
fixed: (In [4559]) Fixes #1092 Add listing of child items that are the same …
2:26 PM Changeset [4558] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
2:26 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4558]) References #792: Add support for units to annotation …
12:28 PM Changeset [4557] by Nicklas Nordborg
References #792: Add support for units to annotation values Made …
12:28 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4557]) References #792: Add support for units to annotation …
10:56 AM Changeset [4556] by Nicklas Nordborg
References #792: Add support for units to annotation values …
10:56 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4556]) References #792: Add support for units to annotation …

Oct 2, 2008:

1:55 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4555]) References #792: Add support for units to annotation …
1:55 PM Changeset [4555] by Nicklas Nordborg
References #792: Add support for units to annotation values Made it …

Oct 1, 2008:

2:00 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) closed by Nicklas Nordborg
fixed: (In [4554]) Fixes #1131: Permission problems creating a new directory …
2:00 PM Changeset [4554] by Nicklas Nordborg
Fixes #1131: Permission problems creating a new directory in a shared …
1:01 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
The problem seems to be that the Directory.getNew() method fails if …
12:47 PM Changeset [4553] by Nicklas Nordborg
Fixes #1132: Plug-ins fail to create sub-directory when "auto-share" …
12:47 PM Ticket #1132 (Plug-ins fail to create sub-directory when "auto-share" functionality ...) closed by Nicklas Nordborg
fixed: (In [4553]) Fixes #1132: Plug-ins fail to create sub-directory when …
12:09 PM Ticket #1132 (Plug-ins fail to create sub-directory when "auto-share" functionality ...) created by Nicklas Nordborg
Here is an example stacktrace from the ZipFileUnpacker plug-in. …
11:29 AM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
Status, Owner changed

Sep 30, 2008:

2:14 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Jari Häkkinen
Replying to jari: > ... (there are some other problems …
1:35 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Jari Häkkinen
The Base1PluginExecuter selects to store data in a directory based on …
12:03 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
Hmmm... I really don't understand this bug report. It is up to the …
11:33 AM Ticket #1131 (Permission problems creating a new directory in a shared directory) created by Jari Häkkinen
On our BASE production server running 2.8.2 we have a problem running …

Sep 29, 2008:

11:41 AM Changeset [4552] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
11:41 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4552]) References #792: Add support for units to annotation …
9:49 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) closed by Nicklas Nordborg
fixed: (In [4550]) Fixes #1130: Batch importer may mix lookup for scanners …
9:48 AM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) updated by Nicklas Nordborg
Last commit [4550] was for ticket #1130!
9:47 AM Changeset [4551] by Nicklas Nordborg
Fixes #1127: Batch import: Problem importing labeled extracts - …
9:47 AM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) closed by Nicklas Nordborg
fixed: (In [4551]) Fixes #1127: Batch import: Problem importing labeled …
9:12 AM Changeset [4550] by Nicklas Nordborg
Fixes #1030: Batch importer may mix lookup for scanners and print robots
9:12 AM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) updated by Nicklas Nordborg
(In [4550]) Fixes #1030: Batch importer may mix lookup for scanners …
8:43 AM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) updated by Nicklas Nordborg
Status, Owner changed
8:42 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) updated by Nicklas Nordborg
Owner, Status changed
8:42 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) created by Nicklas Nordborg
The same template query is used for both scanners and print robots. …

Sep 26, 2008:

2:52 PM Changeset [4549] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
2:52 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4549]) References #792: Add support for units to annotation …
2:29 PM Changeset [4548] by Nicklas Nordborg
References #792: Add support for units to annotation values …
2:29 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4548]) References #792: Add support for units to annotation …
11:41 AM Ticket #1128 (Export of child items) updated by Jari Häkkinen
Maybe we should create a special export that allows inclusion of child …
11:41 AM Ticket #1129 (Filtering of child/parent items in table listing) created by Jari Häkkinen
In many cases it would be nice to be able to filter on child or parent …
11:03 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4547]) References #792: Add support for units to annotation …
11:03 AM Changeset [4547] by Nicklas Nordborg
References #792: Add support for units to annotation values * Added …

Sep 25, 2008:

6:35 PM Ticket #1128 (Export of child items) updated by Nicklas Nordborg
The table exporter plug-in only supports exporting "simple" …
6:16 PM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) updated by Nicklas Nordborg
Type, Milestone changed
The description seems correct. The importer doesn't filter on protocol …
5:28 PM DocBookSupport edited by Jari Häkkinen
Added link to on-line version of the sample sheet. (diff)
5:23 PM Ticket #1128 (Export of child items) created by base
Export of items does not allow selection of child items. I think that …
5:16 PM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) created by base
I tried to import labeled extracts with a protocol connected (protocol …
2:35 PM Changeset [4546] by Nicklas Nordborg
References #792: Add support for units to annotation values Add …
2:35 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4546]) References #792: Add support for units to annotation …
2:13 PM Changeset [4545] by Nicklas Nordborg
References #792: Add support for units to annotation values * Change …
2:13 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4545]) References #792: Add support for units to annotation …
9:01 AM Changeset [4544] by Nicklas Nordborg
References #792: Add support for units to annotation values * Made …
9:01 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4544]) References #792: Add support for units to annotation …

Sep 24, 2008:

11:11 AM Features edited by Jari Häkkinen
Changed info on migration from BASE 1.2 to latest BASE. (diff)

Sep 22, 2008:

2:43 PM Changeset [4543] by Nicklas Nordborg
References #792: Add support for units to annotation values Added web …
2:43 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4543]) References #792: Add support for units to annotation …
9:19 AM Changeset [4542] by Nicklas Nordborg
References #792: Add support for units to annotation values Add …
9:19 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4542]) References #792: Add support for units to annotation …
8:50 AM Changeset [4541] by Nicklas Nordborg
References #792: Add support for units to annotation values Major …
8:50 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4541]) References #792: Add support for units to annotation …

Sep 21, 2008:

4:03 PM reporter_map_importer_genepix.xml attached to DocBookSupport by Jari Häkkinen
4:02 PM reporter_importer_genepix.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_affymetrix2.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_affymetrix.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_384wells.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM reporter_importer_96wells.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM raw_data_importer_genepix-cy5_cy3.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM raw_data_importer_genepix-cy3_cy5.xml attached to DocBookSupport by Jari Häkkinen
3:59 PM plate_importer_384wells.xml attached to DocBookSupport by Jari Häkkinen
3:59 PM plate_importer_96wells.xml attached to DocBookSupport by Jari Häkkinen

Sep 19, 2008:

10:27 AM Ticket #903 (Experiment Explorer is slow) updated by Jari Häkkinen
After my move to a more BASE user based position I begin to understand …
7:51 AM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) closed by Nicklas Nordborg
duplicate: Part of #425.
7:50 AM Changeset [4540] by Nicklas Nordborg
References #425, #1126. Now sets character set correctly when file upload.
7:50 AM Tickets #425,​1126 batch updated by Nicklas Nordborg
(In [4540]) References #425, #1126. Now sets character set correctly …

Sep 18, 2008:

5:16 PM Changeset [4539] by Martin Svensson
References #1092 Two of three biomaterials are updated and …
5:16 PM Ticket #1092 (Add listing of child items that are the same type as the parent) updated by Martin Svensson
(In [4539]) References #1092 Two of three biomaterials are updated and …
4:16 PM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) updated by Jari Häkkinen
Of course. Some more details. After the upload clicking on Edit shows …
3:37 PM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) updated by Nicklas Nordborg
Stacktrace?
3:10 PM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) created by Jari Häkkinen
During upload of the configuration I do not select a charset ... …
1:46 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
Description changed
1:42 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4538]) References #792: Add support for units to annotation …
1:42 PM Changeset [4538] by Nicklas Nordborg
References #792: Add support for units to annotation values First …
11:31 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
Status, Owner changed
11:23 AM Changeset [4537] by Nicklas Nordborg
Merged patch release 2.8.2 to the trunk
11:08 AM Milestone BASE 2.8.2 completed
Revision Log: log:branches/2.8-stable@4500:4535
11:07 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) closed by Nicklas Nordborg
fixed
11:07 AM DownloadPage edited by Nicklas Nordborg
Releasing 2.8.2 (diff)
11:03 AM Changeset [4536] by Nicklas Nordborg
Changes for future release 2.8.3
10:42 AM Changeset [4535] by Nicklas Nordborg
Tagging version 2.8.2
9:00 AM Changeset [4534] by Nicklas Nordborg
Preparing release 2.8.2
8:55 AM Ticket #1125 (Replace existing file in file upload) created by Nicklas Nordborg
Add option to allow replacing an existing file in "Upload new file" dialog.
8:44 AM Ticket #1112 (Create new items with project default properties from active project) closed by Nicklas Nordborg
fixed: (In [4533]) Fixes #1112: Create new items with project default …
8:44 AM Changeset [4533] by Nicklas Nordborg
Fixes #1112: Create new items with project default properties from …

Sep 17, 2008:

2:48 PM Ticket #1092 (Add listing of child items that are the same type as the parent) updated by Martin Svensson
Owner, Status changed
2:36 PM Changeset [4532] by Nicklas Nordborg
Reverting changes from [4529] to avoid conflicts when merging 2.8.2 …
2:27 PM Changeset [4531] by Nicklas Nordborg
References #1124: Base1PluginExecuter fails to import lines with empty …
2:27 PM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Nicklas Nordborg
(In [4531]) References #1124: Base1PluginExecuter fails to import …
12:51 PM Ticket #1110 (Update documentation links on Wiki and in docbook-text) closed by Martin Svensson
fixed: The links on the wiki pages will be updated as soon as 2.8.2 is released.
12:48 PM Ticket #1111 (Samples list page "new extract" (+) button popup says "new sample") closed by Martin Svensson
fixed
12:38 PM Ticket #1118 (Change problematic forms to use POST instead of GET) closed by Nicklas Nordborg
fixed: Closing this so we can release 2.8.2. Open a new ticket if more forms …
12:36 PM Ticket #1118 (Change problematic forms to use POST instead of GET) updated by Nicklas Nordborg
(In [4506]) References #1118: Change problematic forms to use POST …
12:36 PM Ticket #118 (Not allowed to change password) updated by Nicklas Nordborg
Previous commit belongs to ticket #1118.
9:28 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Nicklas Nordborg
Status changed
9:28 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Nicklas Nordborg
Owner, Status changed
9:28 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) reopened by Nicklas Nordborg
There is also a similar problem with extra values being skipped if …
9:22 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) closed by Nicklas Nordborg
fixed: (In [4530]) Fixes #1124: Base1PluginExecuter fails to import lines …
9:22 AM Changeset [4530] by Nicklas Nordborg
Fixes #1124: Base1PluginExecuter fails to import lines with empty fields
8:58 AM Changeset [4529] by Jari Häkkinen
Addresses #1124. The index counter was not updated properly for number …
8:58 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Jari Häkkinen
(In [4529]) Addresses #1124. The index counter was not updated …
8:52 AM Ticket #1112 (Create new items with project default properties from active project) reopened by Nicklas Nordborg
See #1123.
8:52 AM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) closed by Nicklas Nordborg
invalid: Seems like a side-effect of a bad implementation of #1112.
8:38 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Jari Häkkinen
Status changed
8:38 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) created by Jari Häkkinen
I have problems importing BASEFiles that are a mix of serial and …

Sep 16, 2008:

11:31 PM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) updated by Jari Häkkinen
Raw data importer and Formula intensity calculator have the same issue.
8:06 PM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) updated by Jari Häkkinen
Description changed
The same is true for Base1PluginExecuter. Has something changed in …
7:42 PM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) created by Jari Häkkinen
I am running rev 4527 on trunk. Setting use permission to yes will …
4:29 PM Changeset [4528] by Martin Svensson
References #1111 Changed two misleading tooltips. Could not find any …
4:29 PM Ticket #1111 (Samples list page "new extract" (+) button popup says "new sample") updated by Martin Svensson
(In [4528]) References #1111 Changed two misleading tooltips. Could …
1:46 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
SI units reference: http://physics.nist.gov/cuu/Units/units.html
12:58 PM Changeset [4527] by Nicklas Nordborg
Fixes #1112: Create new items with project default properties from …
12:58 PM Ticket #1112 (Create new items with project default properties from active project) closed by Nicklas Nordborg
fixed: (In [4527]) Fixes #1112: Create new items with project default …
9:25 AM Ticket #1112 (Create new items with project default properties from active project) updated by Nicklas Nordborg
Status, Owner changed
8:41 AM Ticket #425 (Store the character encoding for text files) closed by Nicklas Nordborg
fixed
8:39 AM Changeset [4526] by Nicklas Nordborg
References #425: Store the character encoding for text files Updated …
8:39 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4526]) References #425: Store the character encoding for text …
8:31 AM Changeset [4525] by Nicklas Nordborg
References #425: Store the character encoding for text files Adding …
8:31 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4525]) References #425: Store the character encoding for text …

Sep 15, 2008:

1:34 PM Ticket #1122 (News item sort order should be controllable) created by Jari Häkkinen
The order of the news items in the 'home' listing follows date …
1:28 PM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) created by Jari Häkkinen
I get the message […] after upgrading from 2.7 to 2.8 (and even …
11:44 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4524]) References #425: Store the character encoding for text …
11:44 AM Changeset [4524] by Nicklas Nordborg
References #425: Store the character encoding for text files Document …
11:18 AM Changeset [4523] by Nicklas Nordborg
References #425: Store the character encoding for text files Export …
11:18 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4523]) References #425: Store the character encoding for text …
9:41 AM Changeset [4522] by Nicklas Nordborg
References #425: Store the character encoding for text files Added …
9:41 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4522]) References #425: Store the character encoding for text …
9:40 AM Changeset [4521] by Nicklas Nordborg
References #425: Store the character encoding for text files "Test …
9:40 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4521]) References #425: Store the character encoding for text …
9:22 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
Lots of units and conversion factors: http://www.convertworld.com
8:31 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4520]) References #425: Store the character encoding for text …
8:31 AM Changeset [4520] by Nicklas Nordborg
References #425: Store the character encoding for text files Fixed in …

Sep 12, 2008:

9:34 AM Ticket #1111 (Samples list page "new extract" (+) button popup says "new sample") updated by Martin Svensson
Owner, Status changed
9:29 AM Ticket #1110 (Update documentation links on Wiki and in docbook-text) updated by Martin Svensson
(In [4519]) References #1110 The update of source files is done. Still …
9:29 AM Changeset [4519] by Martin Svensson
References #1110 The update of source files is done. Still left to …
8:23 AM Ticket #1120 (The dynamic part of BASE should keep track whether intensity data is ...) created by Jari Häkkinen
I know the tradition is to store data non-logged but there have been …

Sep 11, 2008:

10:21 PM Ticket #1119 (BASE "about" displays GPL2, change this to GPL3) closed by Jari Häkkinen
fixed: (In [4518]) Fixes #1119.
10:21 PM Changeset [4518] by Jari Häkkinen
Fixes #1119.
10:11 PM Changeset [4517] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:11 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4517]) Addresses #1106. Missed to change reference wherefrom …
10:09 PM Changeset [4516] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:09 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4516]) Addresses #1106. Missed to change reference wherefrom …
10:08 PM Changeset [4515] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:08 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4515]) Addresses #1106. Missed to change reference wherefrom …
10:07 PM Changeset [4514] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:07 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4514]) Addresses #1106. Missed to change reference wherefrom …
10:06 PM Changeset [4513] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:06 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4513]) Addresses #1106. Missed to change reference wherefrom …
10:05 PM Changeset [4512] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:05 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4512]) Addresses #1106. Missed to change reference wherefrom …
10:04 PM Changeset [4511] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:04 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4511]) Addresses #1106. Missed to change reference wherefrom …
10:03 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4510]) Addresses #1106. Missed to change reference wherefrom …
10:03 PM Changeset [4510] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:01 PM Changeset [4509] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
10:01 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4509]) Addresses #1106. Missed to change reference wherefrom …
10:00 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4508]) Addresses #1106. Missed to change reference wherefrom …
10:00 PM Changeset [4508] by Jari Häkkinen
Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
8:56 PM Changeset [4507] by Jari Häkkinen
Adding svndigest ignore propery.
8:23 PM Ticket #1119 (BASE "about" displays GPL2, change this to GPL3) updated by Jari Häkkinen
Status changed
8:23 PM Ticket #1119 (BASE "about" displays GPL2, change this to GPL3) created by Jari Häkkinen
11:31 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
Status changed
11:29 AM Changeset [4506] by Nicklas Nordborg
References #118: Change problematic forms to use POST instead of GET …
11:29 AM Ticket #118 (Not allowed to change password) updated by Nicklas Nordborg
(In [4506]) References #118: Change problematic forms to use POST …
11:15 AM Ticket #1118 (Change problematic forms to use POST instead of GET) updated by Nicklas Nordborg
Status, Owner changed
8:53 AM Changeset [4505] by Nicklas Nordborg
Fixes #1097: Outdated FAQs about raw data files
8:53 AM Ticket #1097 (Outdated FAQs about raw data files) closed by Nicklas Nordborg
fixed: (In [4505]) Fixes #1097: Outdated FAQs about raw data files
8:52 AM Ticket #1097 (Outdated FAQs about raw data files) updated by Nicklas Nordborg
Summary, Owner, Status, Description changed
8:28 AM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) closed by Jari Häkkinen
fixed
8:22 AM Changeset [4504] by Nicklas Nordborg
Fixes #1080: Extensions: Manual scan fails.
8:22 AM Ticket #1080 (Extensions: Manual scan fails.) closed by Nicklas Nordborg
fixed: (In [4504]) Fixes #1080: Extensions: Manual scan fails.
8:03 AM Ticket #1080 (Extensions: Manual scan fails.) updated by Nicklas Nordborg
Component, Priority, Status, Owner changed
8:01 AM Ticket #1118 (Change problematic forms to use POST instead of GET) updated by Nicklas Nordborg
Description changed
7:58 AM Ticket #1118 (Change problematic forms to use POST instead of GET) created by Nicklas Nordborg
Problematic forms are forms were the generated GET url get's too long …

Sep 10, 2008:

2:43 PM Changeset [4503] by Nicklas Nordborg
Fixes #1087: Update to Hibernate 3.3.0
2:43 PM Ticket #1087 (Update to Hibernate 3.3.0) closed by Nicklas Nordborg
fixed: (In [4503]) Fixes #1087: Update to Hibernate 3.3.0
1:55 PM Ticket #1032 (Apache server complains "Request-URI Too Large") updated by Johan Vallon-Christersson
Replying to jari: One 'other place' seems to be the filter …
11:52 AM Changeset [4502] by Nicklas Nordborg
Merged patch release 2.8.1 to the trunk.
11:40 AM Milestone BASE 2.8.1 completed
Revision Log: log:branches/2.8-stable@4493:4500
11:39 AM DownloadPage edited by Nicklas Nordborg
Releasing 2.8.1 (diff)
11:32 AM Changeset [4501] by Nicklas Nordborg
Changes for future release 2.8.2
11:22 AM Changeset [4500] by Nicklas Nordborg
Tagging version 2.8.1
11:21 AM Changeset [4499] by Nicklas Nordborg
Preparing release 2.8.1
11:06 AM Changeset [4498] by Nicklas Nordborg
Fixes #1117: Job agents don't allow a job to be executed when the …
11:06 AM Ticket #1117 (Job agents don't allow a job to be executed when the owner is missing ...) closed by Nicklas Nordborg
fixed: (In [4498]) Fixes #1117: Job agents don't allow a job to be executed …
9:54 AM Changeset [4497] by Nicklas Nordborg
Fixes #1115: Job agent can't execute plug-ins
9:54 AM Ticket #1115 (Job agent can't execute plug-ins) closed by Nicklas Nordborg
fixed: (In [4497]) Fixes #1115: Job agent can't execute plug-ins
9:52 AM Ticket #1117 (Job agents don't allow a job to be executed when the owner is missing ...) updated by Nicklas Nordborg
Status, Owner changed
9:52 AM Ticket #1117 (Job agents don't allow a job to be executed when the owner is missing ...) created by Nicklas Nordborg
When registering a job, the currently active project is also stored so …
9:25 AM Changeset [4496] by Nicklas Nordborg
Fixes #1116: Remove settings for jobagent.log and migration.log in …
9:25 AM Ticket #1116 (Remove settings for jobagent.log and migration.log in log4j.properties) closed by Nicklas Nordborg
fixed: (In [4496]) Fixes #1116: Remove settings for jobagent.log and …
9:16 AM Ticket #1116 (Remove settings for jobagent.log and migration.log in log4j.properties) updated by Nicklas Nordborg
Status, Priority, Owner changed
Seems like some errors related to #1115 are written to the log file as …
9:09 AM Ticket #1116 (Remove settings for jobagent.log and migration.log in log4j.properties) created by Nicklas Nordborg
The settings only cause problems even when they are not used. Anyone …
9:07 AM Ticket #1115 (Job agent can't execute plug-ins) updated by Nicklas Nordborg
Owner, Status changed
9:07 AM Ticket #1115 (Job agent can't execute plug-ins) created by Nicklas Nordborg
It doesn't work for any plug-in. If the job agent uses the …

Sep 9, 2008:

4:24 PM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) updated by base
I have just done a quick test again on an experiment with multiple …
3:08 PM Ticket #1055 (Messaging system) updated by Jari Häkkinen
Description, Milestone changed
This ticket was split to this ticket, ticket:1113, and ticket:1114.
3:06 PM Ticket #1113 (Broadcast to currently active BASE users) updated by Jari Häkkinen
Summary changed
3:06 PM Ticket #1114 (Blocking of log in action) created by Jari Häkkinen
We should add support blocking of login to BASE. I am thinking of a …
3:03 PM Ticket #1113 (Broadcast to currently active BASE users) created by Jari Häkkinen
Sometimes a BASE administrator needs to send an urgent broadcast to …
2:31 PM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
Milestone changed
2:31 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
Milestone changed
2:30 PM Ticket #456 (Mass edit) closed by Nicklas Nordborg
wontfix: The batch importer (#1028) solves this.
2:28 PM Ticket #1059 (JasperException: Unable to find setter method for attribute: direction ...) updated by Nicklas Nordborg
Milestone changed
12:03 PM Ticket #1023 (Add support for using regular expressions when filtering lists) closed by Nicklas Nordborg
wontfix: MySQL has a very peculiar regular expression syntax.
11:57 AM Ticket #1112 (Create new items with project default properties from active project) updated by Nicklas Nordborg
Milestone changed
11:57 AM Ticket #1105 (Automatically set "array design" on raw bioassay that has link via ...) updated by Nicklas Nordborg
Milestone changed
11:57 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) updated by Nicklas Nordborg
Milestone changed
11:56 AM Ticket #1097 (Outdated FAQs about raw data files) updated by Nicklas Nordborg
Milestone changed
11:56 AM Ticket #1092 (Add listing of child items that are the same type as the parent) updated by Nicklas Nordborg
Milestone changed
11:56 AM Ticket #1080 (Extensions: Manual scan fails.) updated by Nicklas Nordborg
Milestone changed
11:55 AM Ticket #1111 (Samples list page "new extract" (+) button popup says "new sample") updated by Nicklas Nordborg
Milestone changed
Check buttons on other lists pages also!
8:47 AM Changeset [4495] by Nicklas Nordborg
References #1087: Update to Hibernate 3.3.0 The new JARs are in …
8:47 AM Ticket #1087 (Update to Hibernate 3.3.0) updated by Nicklas Nordborg
(In [4495]) References #1087: Update to Hibernate 3.3.0 The new JARs …
8:20 AM Ticket #1112 (Create new items with project default properties from active project) created by Nicklas Nordborg
When creating new items and a project that has project defaults is …
6:52 AM batchimport_sample.ods attached to DocBookSupport by Jari Häkkinen

Sep 8, 2008:

2:49 PM Ticket #1087 (Update to Hibernate 3.3.0) updated by Nicklas Nordborg
Status, Milestone, Owner changed
2:18 PM Ticket #1110 (Update documentation links on Wiki and in docbook-text) updated by Martin Svensson
Status changed
1:58 PM Ticket #1111 (Samples list page "new extract" (+) button popup says "new sample") created by base
Have searched quickly for this but don't see it. The green circle …
1:32 PM Milestone BASE 2.8 completed
Improved batch item upload/modification functionality.
1:31 PM Ticket #725 (Transfer all old documentation to the new wiki system.) closed by Martin Svensson
fixed: The documentation files have been moved but some links has not yet …
1:28 PM Ticket #1110 (Update documentation links on Wiki and in docbook-text) created by Martin Svensson
There are some obsolete links since the old documentation were moved, …
12:21 PM DownloadPage edited by Nicklas Nordborg
Correct revistion of 2.8 is 4493. (diff)
12:16 PM DownloadPage edited by Nicklas Nordborg
Releasing 2.8 (diff)
12:09 PM Changeset [4494] by Nicklas Nordborg
Changes for future release 2.8.1
11:54 AM ReleaseProcedure edited by Nicklas Nordborg
(diff)
11:49 AM Ticket #1098 (Read documentation for the batch uploaders) closed by Nicklas Nordborg
fixed
11:48 AM Changeset [4493] by Nicklas Nordborg
Tagging version 2.8
11:33 AM Changeset [4492] by Nicklas Nordborg
Preparing release 2.8
11:27 AM Changeset [4491] by Nicklas Nordborg
Changes for future release 2.9
11:24 AM Changeset [4490] by Nicklas Nordborg
Forking new minor version 2.8 branch
11:13 AM Changeset [4489] by Nicklas Nordborg
Oops... didn't copy the trunk
11:13 AM Changeset [4488] by Nicklas Nordborg
Forking new minor version 2.8 branch
11:10 AM Ticket #1028 (Plug-in for batch upload/modification of items) closed by Nicklas Nordborg
fixed
10:52 AM Changeset [4487] by Jari Häkkinen
Fixes #1107. BASE2 is now BASE. Also checked spelling in many files.
10:52 AM Ticket #1107 (Start referring to BASE2 as BASE.) closed by Jari Häkkinen
fixed: (In [4487]) Fixes #1107. BASE2 is now BASE. Also checked spelling in …
8:58 AM Changeset [4486] by Nicklas Nordborg
Fixes #1109: Plot tool doesn't display "Generating plot..." correctly in IE
8:58 AM Ticket #1109 (Plot tool doesn't display "Generating plot..." correctly in IE) closed by Nicklas Nordborg
fixed: (In [4486]) Fixes #1109: Plot tool doesn't display "Generating …
8:44 AM Ticket #1109 (Plot tool doesn't display "Generating plot..." correctly in IE) updated by Nicklas Nordborg
Status, Owner changed
8:44 AM Ticket #1109 (Plot tool doesn't display "Generating plot..." correctly in IE) created by Nicklas Nordborg
This is the same problem as #1108 but affects the plot tool.
8:39 AM Changeset [4485] by Nicklas Nordborg
Fixes #1108: Overview/Correction factor plots doesn't show "Generating …
8:39 AM Ticket #1108 (Overview/Correction factor plots doesn't show "Generating plot..." ...) closed by Nicklas Nordborg
fixed: (In [4485]) Fixes #1108: Overview/Correction factor plots doesn't show …
8:27 AM Changeset [4484] by Jari Häkkinen
Fixed copyright formatting.
8:24 AM Ticket #1108 (Overview/Correction factor plots doesn't show "Generating plot..." ...) updated by Nicklas Nordborg
Owner, Status changed
8:24 AM Ticket #1108 (Overview/Correction factor plots doesn't show "Generating plot..." ...) created by Nicklas Nordborg
The Overview/Correction factor plots has been designed to display an …

Sep 7, 2008:

11:59 PM Changeset [4483] by Jari Häkkinen
Addresses #1107.
11:59 PM Ticket #1107 (Start referring to BASE2 as BASE.) updated by Jari Häkkinen
(In [4483]) Addresses #1107.
11:55 PM Changeset [4482] by Jari Häkkinen
Fixing svn:eol-style.
11:36 PM Historical edited by Jari Häkkinen
Work on ticket:1107 (diff)
11:33 PM Specifications/Test_procedures edited by Jari Häkkinen
Work on ticket:1107 (diff)
11:31 PM Specifications/Test_procedures/Roles edited by Jari Häkkinen
Work on ticket:1107 (diff)
11:29 PM WikiStart edited by Jari Häkkinen
Work on ticket:1107 (diff)
11:28 PM Ticket #1107 (Start referring to BASE2 as BASE.) updated by Jari Häkkinen
Summary changed
Fixed spelling of Summary
11:24 PM Ticket #1107 (Start referring to BASE2 as BASE.) updated by Jari Häkkinen
Status changed
11:24 PM Ticket #1107 (Start referring to BASE2 as BASE.) created by Jari Häkkinen
And in consequence, say BASE version 1 wherever appropriate.
11:22 PM Ticket #1106 (Change license to GPL 3) closed by Jari Häkkinen
fixed: I hope all license references are updated.
11:20 PM DownloadPage edited by Jari Häkkinen
Changing license to GPLv3 (diff)
4:09 PM Changeset [4481] by Jari Häkkinen
Addresses #1106. Added GPLv3 license. Renamed references to GPLv2 …
4:09 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4481]) Addresses #1106. Added GPLv3 license. Renamed references …

Sep 5, 2008:

5:16 PM Changeset [4480] by Jari Häkkinen
Addresses #1106. Moving to GPLv3 in chunked commits.
5:16 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4480]) Addresses #1106. Moving to GPLv3 in chunked commits.
5:16 PM Changeset [4479] by Jari Häkkinen
Addresses #1106. Moving to GPLv3 in chunked commits.
5:16 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4479]) Addresses #1106. Moving to GPLv3 in chunked commits.
5:15 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4478]) Addresses #1106. Moving to GPLv3 in chunked commits.
5:15 PM Changeset [4478] by Jari Häkkinen
Addresses #1106. Moving to GPLv3 in chunked commits.
5:15 PM Changeset [4477] by Jari Häkkinen
Addresses #1106. Moving to GPLv3 in chunked commits.
5:15 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4477]) Addresses #1106. Moving to GPLv3 in chunked commits.
5:14 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4476]) Addresses #1106. Moving to GPLv3 in chunked commits.
5:14 PM Changeset [4476] by Jari Häkkinen
Addresses #1106. Moving to GPLv3 in chunked commits.
5:13 PM Changeset [4475] by Jari Häkkinen
Addresses #1106. Moving to GPLv3 in chunked commits.
5:13 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4475]) Addresses #1106. Moving to GPLv3 in chunked commits.
5:13 PM Changeset [4474] by Jari Häkkinen
Addresses #1106. Moving to GPLv3 in chunked commits.
5:13 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4474]) Addresses #1106. Moving to GPLv3 in chunked commits.
5:12 PM Changeset [4473] by Jari Häkkinen
Addresses #1106. Moving to GPLv3 in chunked commits.
5:12 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
(In [4473]) Addresses #1106. Moving to GPLv3 in chunked commits.
5:09 PM Changeset [4472] by Jari Häkkinen
Fixing svn properties.
5:09 PM Changeset [4471] by Jari Häkkinen
Fixing svn properties.
5:07 PM Changeset [4470] by Jari Häkkinen
Fixing svn properties.
5:06 PM Changeset [4469] by Jari Häkkinen
Fixing svn properties.
5:00 PM Changeset [4468] by Jari Häkkinen
Fixing svn properties.
5:00 PM Changeset [4467] by Jari Häkkinen
Fixing svn properties.
4:59 PM Changeset [4466] by Jari Häkkinen
Fixing svn properties.
4:51 PM Changeset [4465] by Jari Häkkinen
Fixing svn properties.
4:43 PM Changeset [4464] by Jari Häkkinen
Fixing svn properties.
4:43 PM Changeset [4463] by Jari Häkkinen
Fixing svn properties.
4:21 PM Changeset [4462] by Jari Häkkinen
Fixing svn property.
4:20 PM Changeset [4461] by Jari Häkkinen
Fixing svn property.
4:08 PM Changeset [4460] by Jari Häkkinen
Fixing svn properties and inconsistent line ending style.
4:00 PM Changeset [4459] by Jari Häkkinen
Fixing svn properties.
3:41 PM WikiStart edited by Jari Häkkinen
Changing license to GPLv3 (diff)
3:39 PM Ticket #1106 (Change license to GPL 3) updated by Jari Häkkinen
Status changed
3:39 PM Ticket #1106 (Change license to GPL 3) created by Jari Häkkinen
As of BASE 2.8 we will change to GPL version 3, …
2:40 PM MinorReleaseTest edited by Nicklas Nordborg
(diff)
1:47 PM Changeset [4458] by Nicklas Nordborg
References #1093: Test-with-file function should try to match …
1:47 PM Ticket #1093 (Test-with-file function should try to match properties to file columns) updated by Nicklas Nordborg
(In [4458]) References #1093: Test-with-file function should try to …
1:45 PM Ticket #1019 (Reporter list manager - Create reporter list using combinations of ...) closed by Johan Vallon-Christersson
fixed: Replying to nicklas: Have tested and it looks really nice. …
1:36 PM Ticket #1016 (Filter table using a reporter list) closed by Johan Vallon-Christersson
fixed: Tested and looks very good.
1:32 PM Ticket #1015 (Add reporter list from tables that list reporters/reporter info.) updated by Johan Vallon-Christersson
Replying to johan: > > > Failed to successfully add from …
1:31 PM Ticket #1015 (Add reporter list from tables that list reporters/reporter info.) closed by Johan Vallon-Christersson
fixed: > Failed to successfully add from 'Reporter search table' in …
1:28 PM Ticket #1015 (Add reporter list from tables that list reporters/reporter info.) updated by Johan Vallon-Christersson
Owner changed
Have successfully tested to add reporter lists from: Features …
1:19 PM Changeset [4457] by Nicklas Nordborg
Fixes a rendering problem in IE: Ok/Cancel buttons were left-aligned …
1:08 PM Changeset [4456] by Martin Svensson
References #1015 Added a missing request-parameter.
1:08 PM Ticket #1015 (Add reporter list from tables that list reporters/reporter info.) updated by Martin Svensson
(In [4456]) References #1015 Added a missing request-parameter.
1:07 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Johan Vallon-Christersson
Milestone changed
1:05 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Johan Vallon-Christersson
Replying to jari: > Johan check this issue. Will check …
12:46 PM Changeset [4455] by Martin Svensson
References #1015 Added a missing request-parameter.
12:46 PM Ticket #1015 (Add reporter list from tables that list reporters/reporter info.) updated by Martin Svensson
(In [4455]) References #1015 Added a missing request-parameter.
11:46 AM Ticket #1029 (Write specification for support of files in analysis tree (ie not ...) closed by Jari Häkkinen
fixed: The non core BASE issues are moved, see …
11:33 AM Changeset [4454] by Jari Häkkinen
Fixing svn properties.
11:16 AM Changeset [4453] by Jari Häkkinen
Fixing svn properties and copyright year.
10:43 AM Changeset [4452] by Jari Häkkinen
Changed one answer and added another QA.

Sep 4, 2008:

8:55 PM Ticket #1105 (Automatically set "array design" on raw bioassay that has link via ...) created by Nicklas Nordborg
This ticket is similar to #1104.
8:54 PM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) updated by Nicklas Nordborg
Summary changed
8:54 PM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) created by Nicklas Nordborg
When a hybridization is created that is attached to an array slide it …
1:44 PM Changeset [4451] by Nicklas Nordborg
References #1028: Plug-in for batch upload/modification of items …
1:44 PM Ticket #1028 (Plug-in for batch upload/modification of items) updated by Nicklas Nordborg
(In [4451]) References #1028: Plug-in for batch upload/modification of …
12:52 PM Ticket #1028 (Plug-in for batch upload/modification of items) updated by Nicklas Nordborg
Description changed
12:52 PM batchimport-4.txt attached to Ticket #1028 by Nicklas Nordborg
4th version of developers view
11:51 AM ReleaseProcedure edited by Nicklas Nordborg
(diff)
11:47 AM ReleaseProcedure edited by Nicklas Nordborg
(diff)
11:43 AM MinorReleaseTest created by Nicklas Nordborg
Adding test protocol for minor release
11:17 AM Changeset [4450] by Nicklas Nordborg
References #725: The test documentation is not historical. The 'roles' …
11:17 AM Ticket #725 (Transfer all old documentation to the new wiki system.) updated by Nicklas Nordborg
(In [4450]) References #725: The test documentation is not historical. …
11:11 AM Changeset [4449] by Nicklas Nordborg
References #1028: Plug-in for batch upload/modification of items Do …
11:11 AM Ticket #1028 (Plug-in for batch upload/modification of items) updated by Nicklas Nordborg
(In [4449]) References #1028: Plug-in for batch upload/modification of …
11:00 AM Changeset [4448] by Nicklas Nordborg
Do not share batch importers for array lims to EVERYONE.
8:36 AM Ticket #1069 (New mode for Import reporters to reporterlist - Add existing without ...) updated by Nicklas Nordborg
(In [4447]) References #1069: New mode for Import reporters to …
8:36 AM Changeset [4447] by Nicklas Nordborg
References #1069: New mode for Import reporters to reporterlist - Add …
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