Timeline



Apr 19, 2008:

3:27 PM Bioassay_Spot_Data_Sort_ch1.jpg attached to Ticket #998 by Johan Vallon-Christersson
3:26 PM Ticket #998 (Decimal numbers may be incorrectly rounded) created by Johan Vallon-Christersson
Numbers are not sorted correctly. Bioassay, Spots data, Sort Ch1. …

Apr 18, 2008:

2:41 PM Ticket #997 (Read and update installation/upgrade instructions) created by Nicklas Nordborg
The installation and upgrade instructions are becoming a bit old. We …
2:36 PM Ticket #99 (java.lang.NoSuchMethodError: getHibernateLazyInitializer) updated by Nicklas Nordborg
It seems like this issue was fixed in Hibernate 3.2.3. BASE 2.4 …
2:09 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4237]) References #436: Create extension system for the web …
2:08 PM Changeset [4237] by Nicklas Nordborg
References #436: Create extension system for the web application …
1:06 PM Changeset [4236] by Nicklas Nordborg
References #436: Create extension system for the web application …
1:06 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4236]) References #436: Create extension system for the web …
11:51 AM Changeset [4235] by Nicklas Nordborg
Fixes #996: MEV can't open data files that has a missing value in the …
11:51 AM Ticket #996 (MEV can't open data files that has a missing value in the last column) closed by Nicklas Nordborg
fixed: (In [4235]) Fixes #996: MEV can't open data files that has a missing …
11:31 AM Ticket #932 (Convert the MeV launcher to an extension) closed by Nicklas Nordborg
fixed: (In [4234]) Fixes #932: Convert the MeV launcher to an extension …
11:31 AM Changeset [4234] by Nicklas Nordborg
Fixes #932: Convert the MeV launcher to an extension MEV-related code …
11:16 AM Ticket #996 (MEV can't open data files that has a missing value in the last column) created by Nicklas Nordborg
The BioAssaySetExporter can export data in MEV format. The export …

Apr 17, 2008:

3:05 PM Changeset [4233] by Nicklas Nordborg
References #436: Create extension system for the web application …
3:05 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4233]) References #436: Create extension system for the web …
2:25 PM Ticket #995 (Add link to closed tickets for each milestone on DownloadPage) closed by Nicklas Nordborg
fixed
2:25 PM DownloadPage edited by Nicklas Nordborg
Fixes #995 (diff)
2:14 PM Ticket #995 (Add link to closed tickets for each milestone on DownloadPage) updated by Nicklas Nordborg
Status, Owner changed
2:06 PM Changeset [4232] by Nicklas Nordborg
Merged patch release 2.6.2 to the trunk. Delta 2.6.2 - 2.6.1
1:53 PM Ticket #995 (Add link to closed tickets for each milestone on DownloadPage) created by Nicklas Nordborg
It is a bit difficult to get to know what has been fixed for each …
1:38 PM Milestone BASE 2.6.2 completed
Bug fixes for 2.6.1. Revision log: log:branches/2.6-stable@4191:4230
1:37 PM DownloadPage edited by Nicklas Nordborg
Releasing 2.6.2 (diff)
1:31 PM Changeset [4231] by Nicklas Nordborg
Changes for future release 2.6.3
1:19 PM Changeset [4230] by Nicklas Nordborg
Tagging version 2.6.2
1:19 PM Changeset [4229] by Nicklas Nordborg
Preparing release 2.6.2
1:18 PM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) updated by Nicklas Nordborg
(In [4228]) References #957: Base1PluginExecuter doesn't import …
1:18 PM Changeset [4228] by Nicklas Nordborg
References #957: Base1PluginExecuter doesn't import plug-in generated …
12:30 PM Tickets #990,​991 batch updated by Nicklas Nordborg
fixed: (In [4227]) Fixes #990 and #991: Change default create date... and …
12:30 PM Changeset [4227] by Nicklas Nordborg
Fixes #990 and #991: Change default create date... and Created date - …
12:21 PM Ticket #990 (Change default create date for samples (and other items).) updated by Nicklas Nordborg
Owner, Milestone, Status changed
Fixing #991 will fix this as well.
12:17 PM Changeset [4226] by Nicklas Nordborg
Fixes #961: Expand the maximum number of characters accepted by filter …
12:17 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) closed by Nicklas Nordborg
fixed: (In [4226]) Fixes #961: Expand the maximum number of characters …
12:16 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) updated by Nicklas Nordborg
Summary changed
The value should be taken from the max length allowed in the database …
12:03 PM Ticket #991 (Created date - auto changed from blank when edit sample) updated by Nicklas Nordborg
Milestone, Status, Owner changed
12:02 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) updated by Nicklas Nordborg
Status, Type, Milestone, Owner changed
12:01 PM Ticket #994 (Create GAL export plug-in for array designs) updated by Nicklas Nordborg
Priority, Milestone changed
12:01 PM Ticket #993 (Paste multiple barcodes in the Multiple slides wizard) updated by Nicklas Nordborg
Milestone changed

Apr 16, 2008:

4:26 PM Ticket #994 (Create GAL export plug-in for array designs) updated by Johan Vallon-Christersson
Replying to base: > What's wrong with just downloading the …
2:29 PM Ticket #992 (Regular expressions with backslashes trigger "Not allowed to use ...) updated by Nicklas Nordborg
I know that there is no workaround. The syntax with slashes around the …
11:19 AM Ticket #992 (Regular expressions with backslashes trigger "Not allowed to use ...) updated by base
This is quite major because I can't see a workaround for escaping …
11:12 AM Ticket #994 (Create GAL export plug-in for array designs) updated by base
What's wrong with just downloading the "reporter map" in the "data …
8:16 AM Ticket #932 (Convert the MeV launcher to an extension) updated by Nicklas Nordborg
Owner, Status changed
8:15 AM Changeset [4225] by Nicklas Nordborg
References #989: Add support for using extension classes in custom JSP …
8:15 AM Ticket #989 (Add support for using extension classes in custom JSP pages) updated by Nicklas Nordborg
(In [4225]) References #989: Add support for using extension classes …
8:02 AM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4224]) References #436: Create extension system for the web …
8:02 AM Changeset [4224] by Nicklas Nordborg
References #436: Create extension system for the web application Svn …

Apr 15, 2008:

10:14 PM Ticket #993 (Paste multiple barcodes in the Multiple slides wizard) updated by Johan Vallon-Christersson
Replying to nicklas: > The best option left is to open a …
10:09 PM Ticket #927 (Image Macro fails on Feature Trac Page) closed by Johan Vallon-Christersson
fixed
10:06 PM bioassayset_plot.jpg attached to Features by Johan Vallon-Christersson
9:59 PM Features edited by Johan Vallon-Christersson
(diff)
9:58 PM experiment_overview.jpg attached to Features by Johan Vallon-Christersson
9:50 PM bioassayset_histplot.jpg attached to Features by Johan Vallon-Christersson
9:47 PM experiment_explorer.jpg attached to Features by Johan Vallon-Christersson
9:05 PM Ticket #993 (Paste multiple barcodes in the Multiple slides wizard) updated by Nicklas Nordborg
I did a quick check for this and it seems like there is no …
8:14 PM Changeset [4223] by Nicklas Nordborg
References #989: Add support for using extension classes in custom JSP …
8:14 PM Ticket #989 (Add support for using extension classes in custom JSP pages) updated by Nicklas Nordborg
(In [4223]) References #989: Add support for using extension classes …
2:24 PM Changeset [4222] by Nicklas Nordborg
References #989: Add support for using extension classes in custom JSP …
2:24 PM Ticket #989 (Add support for using extension classes in custom JSP pages) updated by Nicklas Nordborg
(In [4222]) References #989: Add support for using extension classes …
1:08 PM Ticket #989 (Add support for using extension classes in custom JSP pages) updated by Nicklas Nordborg
Owner, Status changed
12:59 PM dynamic_columns.jpg attached to Features by Johan Vallon-Christersson
12:24 PM Ticket #927 (Image Macro fails on Feature Trac Page) updated by Johan Vallon-Christersson
Status changed
12:22 PM TAM.txt attached to Ticket #994 by Johan Vallon-Christersson
TAM format explained
12:21 PM print64_10k_.tam attached to Ticket #994 by Johan Vallon-Christersson
TAM file used as print map for array design ‘10K_RAP_oligo’.
12:19 PM 10K_RAP_oligo.gal attached to Ticket #994 by Johan Vallon-Christersson
Example GAL file created in BASE1 from array design ‘10K_RAP_oligo’
12:18 PM Ticket #994 (Create GAL export plug-in for array designs) created by Johan Vallon-Christersson
Add functionality to create/download GAL files from array designs …
10:08 AM Ticket #954 (Array slides – Creating array slides using import plugin) updated by Johan Vallon-Christersson
In ticket:993 functionality to enhance usability of the existing …
10:05 AM Ticket #993 (Paste multiple barcodes in the Multiple slides wizard) created by Johan Vallon-Christersson
In BASE2, multiple array slides can be created using the “Multiple …

Apr 14, 2008:

7:30 PM Ticket #927 (Image Macro fails on Feature Trac Page) updated by Nicklas Nordborg
Owner changed
7:29 PM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) closed by Nicklas Nordborg
fixed: I am closing this now so we can release 2.6.2. New or remaining bugs …
7:13 PM Ticket #992 (Regular expressions with backslashes trigger "Not allowed to use ...) closed by Nicklas Nordborg
wontfix: This can't be fixed. A column mapping ends as soon as a \ is …
5:34 PM Ticket #992 (Regular expressions with backslashes trigger "Not allowed to use ...) created by base
I have some raw data files with column headings F635 Median and …
2:40 PM Changeset [4221] by Nicklas Nordborg
References #988: Add support for servlets in extensions The main …
2:40 PM Ticket #988 (Add support for servlets in extensions) updated by Nicklas Nordborg
(In [4221]) References #988: Add support for servlets in extensions …
7:55 AM Ticket #988 (Add support for servlets in extensions) updated by Nicklas Nordborg
Status, Description, Owner changed
7:53 AM Ticket #955 (Array slides – make test for barcode uniqueness) closed by Nicklas Nordborg
fixed: (In [4220]) Fixes #955: Array slides ?\226?\128?\147 make test for …
7:53 AM Changeset [4220] by Nicklas Nordborg
Fixes #955: Array slides – make test for barcode uniqueness

Apr 11, 2008:

5:36 PM Ticket #991 (Created date - auto changed from blank when edit sample) created by Johan Vallon-Christersson
When editing a sample that does not have Creation date defined …
5:32 PM Ticket #990 (Change default create date for samples (and other items).) created by Johan Vallon-Christersson
When adding Samples the Created date is by default set to current …
2:39 PM Ticket #955 (Array slides – make test for barcode uniqueness) updated by Nicklas Nordborg
Owner, Status changed
This is how it can be implemented. Due to backwards compatibility this …
1:57 PM Ticket #986 (Move example code for web services to the BASE plug-ins site) closed by Nicklas Nordborg
fixed
1:54 PM Ticket #986 (Move example code for web services to the BASE plug-ins site) updated by Nicklas Nordborg
(In [4219]) References #986: Move example code for web services to the …
1:54 PM Changeset [4219] by Nicklas Nordborg
References #986: Move example code for web services to the BASE …
12:02 PM Ticket #986 (Move example code for web services to the BASE plug-ins site) updated by Nicklas Nordborg
Status, Owner changed
11:49 AM Ticket #898 (Move example code for plug-ins to the BASE plug-ins site) closed by Nicklas Nordborg
fixed
11:46 AM DeveloperInformation edited by Nicklas Nordborg
Changed documentation links (diff)
11:41 AM DeveloperInformation edited by Nicklas Nordborg
Link to new site for examples (diff)
10:58 AM Changeset [4218] by Nicklas Nordborg
References #898: Move example code for plug-ins to the BASE plug-ins …
10:58 AM Ticket #898 (Move example code for plug-ins to the BASE plug-ins site) updated by Nicklas Nordborg
(In [4218]) References #898: Move example code for plug-ins to the …

Apr 10, 2008:

9:47 PM Ticket #989 (Add support for using extension classes in custom JSP pages) created by Nicklas Nordborg
An extensions that uses custom JSP pages are currently limited to use …
9:31 PM Ticket #988 (Add support for servlets in extensions) created by Nicklas Nordborg
This is "needed" by the MeV launcher. It currently uses the MevExport
7:31 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) updated by Nicklas Nordborg
Component, Description, Priority, Summary changed
It happens because the functionality in the "Column mappings tab" …
6:10 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) updated by Johan Vallon-Christersson
Description changed
6:09 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) updated by Johan Vallon-Christersson
Description changed
6:08 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) updated by Johan Vallon-Christersson
Summary changed
6:08 PM extract.export.txt attached to Ticket #987 by Johan Vallon-Christersson
File for annotation import
6:07 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) created by Johan Vallon-Christersson
When using Annotation importer. Input file is small and contains two …
2:35 PM Ticket #898 (Move example code for plug-ins to the BASE plug-ins site) updated by Nicklas Nordborg
Owner, Summary, Status changed
Putting web services examples as a separate ticket: #986.
2:34 PM Ticket #986 (Move example code for web services to the BASE plug-ins site) created by Nicklas Nordborg
Was part of #898. Better to have this as it's own ticket.
2:30 PM Ticket #943 (Base1PluginExecuter should import reporterlists) updated by Nicklas Nordborg
There are major changes in the Base1PluginExecutor in the 2.6 branch. …
2:28 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4217]) References #436: Create extension system for the web …
2:28 PM Changeset [4217] by Nicklas Nordborg
References #436: Create extension system for the web application …
2:23 PM Changeset [4216] by Nicklas Nordborg
Fixes #985: File sizes are not correctly rounded Also fixed so that …
2:23 PM Ticket #985 (File sizes are not correctly rounded) closed by Nicklas Nordborg
fixed: (In [4216]) Fixes #985: File sizes are not correctly rounded Also …
1:58 PM Ticket #985 (File sizes are not correctly rounded) created by Nicklas Nordborg
I uploaded a file which size is 4050 (~3.995Kb) bytes in size. This is …
1:52 PM Changeset [4215] by Nicklas Nordborg
Fixes #984: Bioassays may show up duplicated in list of bioassays The …
1:52 PM Ticket #984 (Bioassays may show up duplicated in list of bioassays) closed by Nicklas Nordborg
fixed: (In [4215]) Fixes #984: Bioassays may show up duplicated in list of …
1:46 PM Ticket #984 (Bioassays may show up duplicated in list of bioassays) updated by Nicklas Nordborg
Owner, Status changed
1:45 PM Ticket #983 (update.sh script doesn't validate parameters) closed by Nicklas Nordborg
fixed: (In [4214]) Fixes #983: update.sh script doesn't validate parameters
1:45 PM Changeset [4214] by Nicklas Nordborg
Fixes #983: update.sh script doesn't validate parameters
1:44 PM Ticket #983 (update.sh script doesn't validate parameters) updated by Nicklas Nordborg
Milestone, Status, Priority, Summary, Owner changed
There is a bug in the code that doesn't detect an incorrect number of …
1:42 PM Changeset [4213] by Nicklas Nordborg
Fixes #980: Items created by jobs are not shared to the active project.
1:42 PM Ticket #980 (Items created by jobs are not shared to the active project.) closed by Nicklas Nordborg
fixed: (In [4213]) Fixes #980: Items created by jobs are not shared to the …
12:53 PM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) updated by Nicklas Nordborg
(In [4212]) References #957: Base1PluginExecuter doesn't import …
12:53 PM Changeset [4212] by Nicklas Nordborg
References #957: Base1PluginExecuter doesn't import plug-in generated …
12:18 PM Ticket #984 (Bioassays may show up duplicated in list of bioassays) created by Nicklas Nordborg
I am not really sure why this is happening. Sometimes a bioassay …
12:09 PM Ticket #983 (update.sh script doesn't validate parameters) created by Jari Häkkinen
I am following the Illumina plug-in installation recipe and read that …

Apr 9, 2008:

9:03 PM Ticket #980 (Items created by jobs are not shared to the active project.) updated by Nicklas Nordborg
Priority, Status, Milestone, Owner, Summary changed
Hmmm... I get the same behavior. I have no idea why. The active …
4:08 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) created by Johan Vallon-Christersson
After running a plugin (that creates directories and files and …
3:16 PM Ticket #981 (Share all subdirectories and files when sharing a directory) created by Johan Vallon-Christersson
When sharing a directory, its subdirectories and files are not shared. …
3:15 PM Ticket #980 (Items created by jobs are not shared to the active project.) created by Johan Vallon-Christersson
The user case: When working in an active project I run a plugin in an …
2:44 PM Ticket #979 (Biomaterial LIMS) created by Johan Vallon-Christersson
Enhancing biomaterial management in BASE by adding Biomaterial LIMS …

Apr 8, 2008:

2:59 PM Ticket #978 (Unzipped files never inherit file type specified during upload) updated by Nicklas Nordborg
Unfortunately this is an "unfixable" defect. The API for unpacking …
2:16 PM Ticket #978 (Unzipped files never inherit file type specified during upload) created by base
There should perhaps be an option to unpack an uploaded zip file …

Apr 7, 2008:

2:09 PM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) updated by Nicklas Nordborg
Status changed
2:02 PM Changeset [4211] by Nicklas Nordborg
Fixes #970: PluginConfigurationImporter doesn't support multi-valued …
2:02 PM Ticket #970 (PluginConfigurationImporter doesn't support multi-valued parameters) closed by Nicklas Nordborg
fixed: (In [4211]) Fixes #970: PluginConfigurationImporter doesn't support …
1:48 PM Ticket #970 (PluginConfigurationImporter doesn't support multi-valued parameters) updated by Nicklas Nordborg
Status, Owner changed
1:48 PM Changeset [4210] by Nicklas Nordborg
Fixes #977: ClassCastException in Experiment overview when clicking on …
1:48 PM Ticket #977 (ClassCastException in Experiment overview when clicking on an ...) closed by Nicklas Nordborg
fixed: (In [4210]) Fixes #977: ClassCastException in Experiment overview when …
1:25 PM Ticket #977 (ClassCastException in Experiment overview when clicking on an ...) updated by Nicklas Nordborg
Status, Owner changed
1:24 PM Ticket #977 (ClassCastException in Experiment overview when clicking on an ...) created by Nicklas Nordborg
1. Select an experiment which has at least one experimental factor. …
1:19 PM Changeset [4209] by Nicklas Nordborg
Fixes #976: NullPointerException in Experiment overview
1:19 PM Ticket #976 (NullPointerException in Experiment overview) closed by Nicklas Nordborg
fixed: (In [4209]) Fixes #976: NullPointerException in Experiment overview
1:03 PM Ticket #976 (NullPointerException in Experiment overview) updated by Nicklas Nordborg
Owner, Status changed
1:01 PM Changeset [4208] by Nicklas Nordborg
References #436: Create extension system for the web application …
1:01 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4208]) References #436: Create extension system for the web …
12:21 PM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) updated by Nicklas Nordborg
I think I have found the source for the NullPointerException. See #976.
12:19 PM Ticket #976 (NullPointerException in Experiment overview) created by Nicklas Nordborg
The original report is found in #975. I have now been able to …
8:09 AM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) updated by Nicklas Nordborg
I don't think the NullPointerException has anything to do with the …

Apr 4, 2008:

6:37 PM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) updated by Johan Vallon-Christersson
Description changed
6:36 PM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) created by Johan Vallon-Christersson
Working in an experiment containing 3 raw bioassays, all from the same …
2:44 PM Changeset [4207] by Nicklas Nordborg
References #436: Create extension system for the web application …
2:44 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4207]) References #436: Create extension system for the web …
1:46 PM Ticket #954 (Array slides – Creating array slides using import plugin) updated by Johan Vallon-Christersson
We have plans to create specifications for a more general item …
8:42 AM Changeset [4206] by Nicklas Nordborg
References #436: Create extension system for the web application …
8:42 AM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4206]) References #436: Create extension system for the web …

Apr 3, 2008:

8:24 PM Ticket #972 (Assign job to experiment when the job is created) updated by Nicklas Nordborg
Plug-ins may do that, but none of them do it today except intensity …
8:05 PM Ticket #966 (Registered and possibly last updated – add to all/most items) updated by Nicklas Nordborg
The 'registered' property would be easier. This could be hooked into …
11:51 AM Ticket #972 (Assign job to experiment when the job is created) updated by Johan Vallon-Christersson
Replying to nicklas: > Hmmm... the problem is that a job …
11:34 AM Ticket #974 (Link from raw bioassay to job that imported the raw data) created by Johan Vallon-Christersson
This ticket relates to ticket:750 A user scenario involves going back …

Apr 2, 2008:

8:41 PM Ticket #973 (Add a 'svn.update' target to the build file) updated by Nicklas Nordborg
Description, Summary changed
8:41 PM Ticket #973 (Add a 'svn.update' target to the build file) closed by Nicklas Nordborg
fixed: (In [4205]) Fixes #973: Add a 'svn.update' target to the build file
8:41 PM Changeset [4205] by Nicklas Nordborg
Fixes #973: Add a 'svn.update' target to the build file
7:54 PM Ticket #973 (Add a 'svn.update' target to the build file) created by Nicklas Nordborg
This would simplify automatic generation of the documentation. After …
7:42 PM Ticket #972 (Assign job to experiment when the job is created) updated by Nicklas Nordborg
Component, Type changed
Hmmm... the problem is that a job doesn't become part of an experiment …
6:33 PM MergeBioassays_stdout.txt attached to Ticket #957 by Johan Vallon-Christersson
6:33 PM MergeBioassays_stdin.txt attached to Ticket #957 by Johan Vallon-Christersson
6:32 PM PositionMerge_stdout.txt attached to Ticket #957 by Johan Vallon-Christersson
6:32 PM PositionMerge_stdin.txt attached to Ticket #957 by Johan Vallon-Christersson
6:31 PM CGHnormalization_stdout.txt attached to Ticket #957 by Johan Vallon-Christersson
6:30 PM CGHnormalization_stdin.txt attached to Ticket #957 by Johan Vallon-Christersson
6:27 PM VariationFilter_stdout.txt attached to Ticket #957 by Johan Vallon-Christersson
6:27 PM VariationFilter_stdin.txt attached to Ticket #957 by Johan Vallon-Christersson
6:27 PM RatioFold_stdout.txt attached to Ticket #957 by Johan Vallon-Christersson
6:26 PM RatioFold_stdin.txt attached to Ticket #957 by Johan Vallon-Christersson
6:25 PM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) updated by Johan Vallon-Christersson
Basing the decision about creating a new data cube or not on …
5:44 PM Ticket #966 (Registered and possibly last updated – add to all/most items) updated by Johan Vallon-Christersson
As the 'registered' property and 'last updated' property can be …
5:06 PM Ticket #972 (Assign job to experiment when the job is created) created by Johan Vallon-Christersson
This ticket concerns jobs running in experiments. Typically, a user …
2:57 PM norm.export.xml attached to Ticket #970 by base
1:46 PM Ticket #971 (Be able to upgrade BASE without restarting Tomcat) closed by Nicklas Nordborg
invalid: This is problem with Tomcat.
1:26 PM Ticket #971 (Be able to upgrade BASE without restarting Tomcat) updated by base
I just stopped base2 in tomcat manager, deleted the …
1:20 PM Ticket #971 (Be able to upgrade BASE without restarting Tomcat) created by base
I just upgraded our dev server (system info below) […] and found …
12:43 PM Ticket #970 (PluginConfigurationImporter doesn't support multi-valued parameters) created by Nicklas Nordborg
From the mailing list: …
12:43 PM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) updated by base
Great, thanks. Tested. Works :-)
10:44 AM Changeset [4204] by Nicklas Nordborg
Fixes #969: Annotation importer doesn't save "Owned by ..." parameter …
10:44 AM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) closed by Nicklas Nordborg
fixed: (In [4204]) Fixes #969: Annotation importer doesn't save "Owned by …
9:44 AM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) updated by Nicklas Nordborg
Status, Owner changed
9:43 AM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) closed by Nicklas Nordborg
fixed: (In [4203]) Fixes #963: New hybridization... button on labelled …
9:43 AM Changeset [4203] by Nicklas Nordborg
Fixes #963: New hybridization... button on labelled extract page …
9:25 AM Ticket #966 (Registered and possibly last updated – add to all/most items) updated by Nicklas Nordborg
This ticket is a bit related to #108. In fact, both can be solved at …

Apr 1, 2008:

8:07 PM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) updated by base
Thanks for looking into it.
7:41 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) updated by Nicklas Nordborg
The current limit is hardcoded in the code: …
7:39 PM Ticket #965 (Filtering the list – selection list vs. input box for enumeration type ...) updated by Nicklas Nordborg
Type changed
7:39 PM Ticket #966 (Registered and possibly last updated – add to all/most items) updated by Nicklas Nordborg
Type changed
7:39 PM Ticket #967 (Assign the parent directory permissions to new files/directories) updated by Nicklas Nordborg
Type changed
7:24 PM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) created by Nicklas Nordborg
It seems like the annotation importer doesn't save which option has …
3:30 PM Ticket #968 (Raw data importer – Enhance feature mismatch error handling) created by Johan Vallon-Christersson
Feature mismatch error handling when importing raw data concerns how …
3:19 PM Ticket #967 (Assign the parent directory permissions to new files/directories) updated by base
sorry... this is not a defect, it's a suggestion, please edit!
3:18 PM Ticket #967 (Assign the parent directory permissions to new files/directories) created by base
I made a /home/shared folder and gave it Everyone RU permissions. The …
2:55 PM Changeset [4202] by Nicklas Nordborg
References #436: Create extension system for the web application All …
2:55 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4202]) References #436: Create extension system for the web …
2:43 PM Ticket #966 (Registered and possibly last updated – add to all/most items) created by Johan Vallon-Christersson
Some items, such as Samples, have a Registered property, i.e., the …
2:25 PM Ticket #965 (Filtering the list – selection list vs. input box for enumeration type ...) created by Johan Vallon-Christersson
This ticket is somewhat related to ticket:962 but more specifically …
2:06 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) updated by Johan Vallon-Christersson
Will changing the limitation involve code changes or is it something …

Mar 31, 2008:

9:43 PM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) updated by Nicklas Nordborg
Owner, Milestone, Status changed
8:56 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) updated by Nicklas Nordborg
The more complex a query is the longer time it will take to execute …
8:43 PM Ticket #962 (Filtering the list – ”not equal to” operator for selection list options) updated by Nicklas Nordborg
Description changed
Hmm... would it be possible to convert the list to something that …
8:41 PM Ticket #964 (Support preset filter list with null/not null values) created by Nicklas Nordborg
Currently, when a preset filter uses a list of predefined values you …
2:59 PM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) updated by base
I will test this soon. Thanks for the fix. Bob.
2:58 PM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) created by base
When clicking on the "New hybridization..." action button on a labeled …
12:44 PM Ticket #962 (Filtering the list – ”not equal to” operator for selection list options) created by Johan Vallon-Christersson
When filtering an item list some columns that can only take a few …
12:13 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) created by Johan Vallon-Christersson
If an item list contains many items you may need to use a filter to be …
10:48 AM Changeset [4201] by Nicklas Nordborg
Fixes #958: Document that the migration program is no longer actively …
10:48 AM Ticket #958 (Document that the migration program is no longer actively tested or ...) closed by Nicklas Nordborg
fixed: (In [4201]) Fixes #958: Document that the migration program is no …
10:00 AM Ticket #960 (Removing a user from a group doesn't work if the user is a quota group ...) closed by Nicklas Nordborg
fixed: (In [4200]) Fixes #960: Removing a user from a group doesn't work if …
10:00 AM Changeset [4200] by Nicklas Nordborg
Fixes #960: Removing a user from a group doesn't work if the user is a …
9:59 AM Ticket #959 (Users may be duplicated in group member list for quota groups) closed by Nicklas Nordborg
fixed: (In [4199]) Fixes #959: Users may be duplicated in group member list …
9:59 AM Changeset [4199] by Nicklas Nordborg
Fixes #959: Users may be duplicated in group member list for quota groups
9:58 AM Ticket #960 (Removing a user from a group doesn't work if the user is a quota group ...) updated by Nicklas Nordborg
Status, Owner changed
9:58 AM Ticket #960 (Removing a user from a group doesn't work if the user is a quota group ...) created by Nicklas Nordborg
How to reproduce: 1. Create a group G and assign it some quota 2. …

Mar 28, 2008:

2:54 PM Ticket #959 (Users may be duplicated in group member list for quota groups) updated by Nicklas Nordborg
Status, Owner changed
2:52 PM Ticket #959 (Users may be duplicated in group member list for quota groups) created by Nicklas Nordborg
How to reproduce: 1. Create two groups, A and B. Assign quota to one …
2:42 PM Ticket #958 (Document that the migration program is no longer actively tested or ...) created by Nicklas Nordborg
There is a section about the migration in the docbook documentation.
2:41 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4198]) References #436: Create extension system for the web …
2:41 PM Changeset [4198] by Nicklas Nordborg
References #436: Create extension system for the web application …

Mar 27, 2008:

8:56 AM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) created by Nicklas Nordborg
The first case was a filtering plug-in which caused the raw data links …
8:36 AM Ticket #956 (Spot image generation throws NullPointerException if a spot has an X ...) closed by Nicklas Nordborg
fixed: (In [4197]) Fixes #956: Spot image generation throws …
8:36 AM Changeset [4197] by Nicklas Nordborg
Fixes #956: Spot image generation throws NullPointerException if a …
8:06 AM Ticket #956 (Spot image generation throws NullPointerException if a spot has an X ...) updated by Nicklas Nordborg
Status, Description changed
8:02 AM Ticket #956 (Spot image generation throws NullPointerException if a spot has an X ...) created by Nicklas Nordborg
Here is the stacktrace (from BASE 2.4.5): […] See also: …

Mar 26, 2008:

7:13 PM Ticket #954 (Array slides – Creating array slides using import plugin) updated by Nicklas Nordborg
Summary, Description, Milestone changed
7:12 PM Ticket #955 (Array slides – make test for barcode uniqueness) created by Nicklas Nordborg
As mentioned in the BASE core specifications enforcing array slide …
6:16 PM Ticket #954 (Array slides – Creating array slides using import plugin) created by Johan Vallon-Christersson
In BASE2, array slides can be created one-by-one or by using the …

Mar 25, 2008:

10:01 AM Changeset [4196] by Nicklas Nordborg
Fixes #952: Update MySQL JDBC driver to a newer version
10:01 AM Ticket #952 (Update MySQL JDBC driver to a newer version) closed by Nicklas Nordborg
fixed: (In [4196]) Fixes #952: Update MySQL JDBC driver to a newer version
10:00 AM Ticket #952 (Update MySQL JDBC driver to a newer version) updated by Nicklas Nordborg
Summary changed
9:28 AM Ticket #952 (Update MySQL JDBC driver to a newer version) updated by Nicklas Nordborg
Status, Owner changed
9:08 AM Changeset [4195] by Nicklas Nordborg
Merged patch release 2.6.1 to the trunk.
9:07 AM ReleaseProcedure edited by Nicklas Nordborg
Corrected merge instructions (diff)
9:02 AM ReleaseProcedure edited by Nicklas Nordborg
Updating release procedure (diff)
8:50 AM Milestone BASE 2.6.1 completed
Bug fixes for 2.6. Revision log: log:branches/2.6-stable@4156:4191
8:43 AM DownloadPage edited by Nicklas Nordborg
Added 2.6.1 for download (diff)
8:31 AM Changeset [4194] by Nicklas Nordborg
Changes for future release 2.6.2
8:28 AM Changeset [4193] by Nicklas Nordborg
Tagging version 2.6.1
8:10 AM Changeset [4192] by Nicklas Nordborg
Preparing release 2.6.1
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