Timeline



Mar 14, 2008:

12:50 PM RobotsTxt edited by Nicklas Nordborg
Disallow /changeset for robots (diff)
12:40 PM RobotsTxt edited by Nicklas Nordborg
Disallow robots (diff)
11:24 AM ReleaseProcedure edited by Nicklas Nordborg
Changed release manager and merge master (diff)
11:17 AM Changeset [4178] by Nicklas Nordborg
Merged log:trunk#4160:4177 into extensions branch
11:13 AM Changeset [4177] by Nicklas Nordborg
Fixes #948: Change web application to servlet api 2.5 instead of 2.4 …
11:13 AM Ticket #948 (Change web application to servlet api 2.5 instead of 2.4) updated by Nicklas Nordborg
(In [4177]) Fixes #948: Change web application to servlet api 2.5 …
11:10 AM Changeset [4176] by Nicklas Nordborg
Fixes #948: Change web application to servlet api 2.5 instead of 2.4
11:10 AM Ticket #948 (Change web application to servlet api 2.5 instead of 2.4) closed by Nicklas Nordborg
fixed: (In [4176]) Fixes #948: Change web application to servlet api 2.5 …
9:47 AM Changeset [4175] by Nicklas Nordborg
Fixes #949: Installation documentation has incorrect information about …
9:47 AM Ticket #949 (Installation documentation has incorrect information about which Java ...) closed by Nicklas Nordborg
fixed: (In [4175]) Fixes #949: Installation documentation has incorrect …
9:33 AM Ticket #949 (Installation documentation has incorrect information about which Java ...) created by Nicklas Nordborg
Quotes from the documentation: "Download and install Java SDK 1.5..." …
9:18 AM Ticket #948 (Change web application to servlet api 2.5 instead of 2.4) created by Nicklas Nordborg
I need to get the "context path" (=the root path of the web …

Mar 13, 2008:

8:36 AM Changeset [4174] by Nicklas Nordborg
Fixes #947: "not-null property references a null or transient value" …
8:36 AM Ticket #947 ("not-null property references a null or transient value" error on logout) closed by Nicklas Nordborg
fixed: (In [4174]) Fixes #947: "not-null property references a null or …
8:31 AM Ticket #947 ("not-null property references a null or transient value" error on logout) updated by Nicklas Nordborg
Priority, Milestone, Owner, Status, Summary changed
The exception happens when saving user settings to the database. It …

Mar 12, 2008:

11:27 PM Ticket #947 ("not-null property references a null or transient value" error on logout) updated by base
Update... Impersonating a user (who has login disabled) and then …
11:23 PM Ticket #947 ("not-null property references a null or transient value" error on logout) created by base
I'm not sure how to replicate this but thought I'd post the stack …
12:50 PM Changeset [4173] by Nicklas Nordborg
Fixes #945: Build: data/helptexts.xml is not removed by ant clean
12:50 PM Ticket #945 (Build: data/helptexts.xml is not removed by ant clean) closed by Nicklas Nordborg
fixed: (In [4173]) Fixes #945: Build: data/helptexts.xml is not removed by …
12:49 PM Ticket #945 (Build: data/helptexts.xml is not removed by ant clean) updated by Nicklas Nordborg
Status, Milestone, Owner changed
11:49 AM Ticket #946 (Job agents list view don't display running jobs) closed by Nicklas Nordborg
fixed: (In [4172]) Fixes #946: Job agents list view don't display running jobs
11:49 AM Changeset [4172] by Nicklas Nordborg
Fixes #946: Job agents list view don't display running jobs
11:24 AM Ticket #946 (Job agents list view don't display running jobs) updated by Nicklas Nordborg
Owner, Status changed
11:24 AM Ticket #944 (Synchronisation issues when sending ABORT signal to a job) closed by Nicklas Nordborg
fixed: (In [4171]) Fixes #944: Synchronisation issues when sending ABORT …
11:24 AM Changeset [4171] by Nicklas Nordborg
Fixes #944: Synchronisation issues when sending ABORT signal to a job …
11:01 AM Ticket #944 (Synchronisation issues when sending ABORT signal to a job) updated by Nicklas Nordborg
Status, Owner changed
10:57 AM Ticket #946 (Job agents list view don't display running jobs) created by Nicklas Nordborg
From the mailing list: > After upgrade from BASE 2.4.6 to 2.6.0 I …

Mar 10, 2008:

4:46 PM Ticket #945 (Build: data/helptexts.xml is not removed by ant clean) created by base
I found this while doing a diff between a fresh svn checkout and my …
1:17 PM Ticket #944 (Synchronisation issues when sending ABORT signal to a job) created by Nicklas Nordborg
Consider the following code: […] It is the standard way of …
11:11 AM Ticket #943 (Base1PluginExecuter should import reporterlists) updated by Martin Svensson
Status, Owner changed

Mar 7, 2008:

4:04 PM Ticket #943 (Base1PluginExecuter should import reporterlists) created by Johan Enell
The Base1PluginExecuter doesn't import a reporterlist. In base1 a …
2:07 PM Changeset [4170] by Nicklas Nordborg
References #436: Create extension system for the web application
2:07 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4170]) References #436: Create extension system for the web …
1:01 PM Ticket #934 (Move the BASE subversion repository to the new server) closed by Nicklas Nordborg
fixed

Mar 4, 2008:

8:14 PM WikiStart edited by Peter Johansson
fixing broken links (diff)
2:50 PM Changeset [4169] by Nicklas Nordborg
References #436: Create extension system for the web application …
2:50 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4169]) References #436: Create extension system for the web …
2:49 PM Changeset [4168] by Nicklas Nordborg
References #436: Create extension system for the web application …
2:49 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4168]) References #436: Create extension system for the web …
1:09 PM ReleaseProcedure edited by Nicklas Nordborg
Change links to subversion repository (diff)
1:05 PM DownloadPage edited by Nicklas Nordborg
Change links to subversion repository (diff)
1:01 PM WikiStart edited by Nicklas Nordborg
Change image urls (diff)

Mar 3, 2008:

9:20 AM Tickets #941,​939 batch updated by Nicklas Nordborg
(In [4167]) Fixes #941: SQLException when exporting "merged on …
9:20 AM Changeset [4167] by Nicklas Nordborg
Fixes #941: SQLException when exporting "merged on reporters" with …
8:53 AM Ticket #941 (SQLException when exporting "merged on reporters" with BioAssaySet ...) updated by Nicklas Nordborg
Owner, Status changed
8:43 AM Changeset [4166] by Nicklas Nordborg
Fixes #938: BioAssaySetExporter: last line can have missing columns
8:43 AM Ticket #938 (BioAssaySetExporter: last line can have missing columns) closed by Nicklas Nordborg
fixed: (In [4166]) Fixes #938: BioAssaySetExporter: last line can have …
8:41 AM Ticket #938 (BioAssaySetExporter: last line can have missing columns) updated by Nicklas Nordborg
Status, Owner, Summary changed
8:33 AM Ticket #942 (BioAssaySetExporter should export ratio values instead of log-ratio ...) closed by Nicklas Nordborg
fixed: (In [4165]) Fixes #942: BioAssaySetExporter should export ratio values …
8:33 AM Changeset [4165] by Nicklas Nordborg
Fixes #942: BioAssaySetExporter should export ratio values instead of …
8:10 AM mev.png attached to Ticket #942 by Nicklas Nordborg
MeV: Spot information
8:09 AM Ticket #942 (BioAssaySetExporter should export ratio values instead of log-ratio ...) created by Nicklas Nordborg
MeV expects ratio-values. Using the "Launch MeV" tool in BASE loads …

Feb 29, 2008:

3:08 PM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) updated by base
I agree that adressing #941 will almost certainly fix this problem. Bob.
1:55 PM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) updated by Nicklas Nordborg
I think that this issue may be related to #941. I am not very familiar …
1:48 PM Ticket #941 (SQLException when exporting "merged on reporters" with BioAssaySet ...) created by Nicklas Nordborg
This may be related to #939, but I am not sure. In any case, here is …
12:03 PM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) updated by base
Just added two exported BASEfiles. The first, you could argue, is …
12:00 PM new.bioassayset.export.reporteraveraged.txt attached to Ticket #939 by base
AVERAGED on reporter
11:59 AM new.bioassayset.export.txt attached to Ticket #939 by base
NOT averaged on reporter
9:58 AM Ticket #938 (BioAssaySetExporter: last line can have missing columns) updated by Nicklas Nordborg
Description, Milestone changed
The line numbers match the version in that branch. I guess diffs needs …
9:46 AM Ticket #936 (Clearer exception from jobagent) updated by Nicklas Nordborg
Milestone changed
9:46 AM Ticket #935 (jobagent status) updated by Nicklas Nordborg
Milestone changed
8:18 AM Ticket #940 (Can't generate web services wsdl files with ant 1.7) closed by Nicklas Nordborg
fixed: (In [4164]) Fixes #940: Can't generate web services wsdl files with ant 1.7
8:18 AM Changeset [4164] by Nicklas Nordborg
Fixes #940: Can't generate web services wsdl files with ant 1.7

Feb 28, 2008:

11:47 PM Ticket #938 (BioAssaySetExporter: last line can have missing columns) updated by base
I think the problem is that it was not moved out of the if() statement …
11:35 PM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) updated by base
I'll make a smaller demo tomorrow (good suggestion) and get back to …
10:57 PM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) updated by Nicklas Nordborg
From your description I don't understand what the problem is. Do you …
9:30 PM Ticket #938 (BioAssaySetExporter: last line can have missing columns) updated by Nicklas Nordborg
Hmmm... I would be nice with some information about the bug... From …
8:43 PM Ticket #940 (Can't generate web services wsdl files with ant 1.7) updated by Nicklas Nordborg
Status, Owner changed
I checked the source code for the Java2WSDLTask class at …
8:17 PM Ticket #940 (Can't generate web services wsdl files with ant 1.7) updated by Nicklas Nordborg
Running ant with the -verbose options yields a very long stacktrace, …
8:16 PM Ticket #940 (Can't generate web services wsdl files with ant 1.7) created by Nicklas Nordborg
Compiling BASE with ant 1.7.0 fails when generating wsdl files. The …
5:11 PM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) updated by base
oh dear, it was just over the 4MB limit... email me and i'll send it …
5:09 PM Ticket #939 (BioAssaySetExporter doesn't export BASEfiles for multiple array ...) created by base
I am finding problems with BASEfile export, averaged over reporter or …
4:03 PM Ticket #938 (BioAssaySetExporter: last line can have missing columns) updated by Johan Enell
Milestone changed
2:33 PM Ticket #938 (BioAssaySetExporter: last line can have missing columns) created by base
This little bug was preventing base1 hierarchical clustering (due to …
10:54 AM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4163]) References #436: Create extension system for the web …
10:54 AM Changeset [4163] by Nicklas Nordborg
References #436: Create extension system for the web application The …

Feb 26, 2008:

7:54 PM Changeset [4162] by Nicklas Nordborg
References #937: Spelling of method name: Xml --> XML
7:54 PM Ticket #937 (Extend XMLUtil with methods that can validate an XML file agains a ...) updated by Nicklas Nordborg
(In [4162]) References #937: Spelling of method name: Xml --> XML
1:28 PM Changeset [4161] by Nicklas Nordborg
Merged log:trunk#4159:4160 into extensions branch
1:21 PM Changeset [4160] by Nicklas Nordborg
Fixes #937: Extend XMLUtil with methods that can validate an XML file …
1:21 PM Ticket #937 (Extend XMLUtil with methods that can validate an XML file agains a ...) closed by Nicklas Nordborg
fixed: (In [4160]) Fixes #937: Extend XMLUtil with methods that can validate …
11:55 AM Ticket #937 (Extend XMLUtil with methods that can validate an XML file agains a ...) created by Nicklas Nordborg
This is needed for the the xml files used by the Extensions API (see …
10:59 AM ReleaseProcedure edited by Jari Häkkinen
Added document generation note for trac. (diff)

Feb 25, 2008:

6:00 PM Ticket #936 (Clearer exception from jobagent) updated by Johan Enell
Well once again i was testing with wrong version…
5:56 PM Ticket #935 (jobagent status) closed by Johan Enell
invalid: Because I was testing my script on a server that was to old…
12:01 PM Ticket #936 (Clearer exception from jobagent) closed by Nicklas Nordborg
worksforme: This is probably because the log4j has been configured to print log …
11:52 AM Ticket #935 (jobagent status) updated by Nicklas Nordborg
My jobagent does. Here is the output: […] What makes you think …
11:41 AM Ticket #936 (Clearer exception from jobagent) updated by Johan Enell
Owner, Component changed
11:40 AM Ticket #936 (Clearer exception from jobagent) created by Johan Enell
When doing a 'jobagent.sh info' on a jobagent I get a ConnectException
11:32 AM Ticket #935 (jobagent status) created by Johan Enell
The documentation about jobagent.sh describes the command status but …
11:01 AM Changeset [4159] by Johan Enell
Changes for future release 2.6.1
10:54 AM Milestone BASE 2.6 completed
The major aim with this milestone is to fix all issues related to …
10:54 AM DownloadPage edited by Johan Enell
(diff)
10:52 AM DownloadPage edited by Johan Enell
(diff)
10:52 AM DownloadPage edited by Johan Enell
added the .0 (diff)
10:50 AM DownloadPage edited by Johan Enell
added 2.6 release (diff)

Feb 22, 2008:

2:47 PM Changeset [4158] by Nicklas Nordborg
References #436: Create extension system for the web application …
2:47 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4158]) References #436: Create extension system for the web …
2:28 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
(In [4157]) References #436: Creating branch for prototyping web extensions
2:28 PM Changeset [4157] by Nicklas Nordborg
References #436: Creating branch for prototyping web extensions

Feb 21, 2008:

6:31 PM DownloadPage edited by Jari Häkkinen
Removed links to packages older than 2.5 (diff)
4:28 PM Changeset [4156] by Johan Enell
Tagging version 2.6
2:17 PM Ticket #934 (Move the BASE subversion repository to the new server) created by Nicklas Nordborg
The new URL of the subversion repository is: …
11:09 AM WikiStart edited by Jari Häkkinen
(diff)
10:48 AM Changeset [4155] by Nicklas Nordborg
Preparing release 2.6.0
10:47 AM Changeset [4154] by Nicklas Nordborg
Changes for future release 2.7
10:44 AM Changeset [4153] by Nicklas Nordborg
Forking new minor version 2.6 branch
10:43 AM Changeset [4152] by Nicklas Nordborg
Updated credits.txt before 2.6 release
10:36 AM WikiStart edited by Nicklas Nordborg
Link to correct version of GPL (diff)
9:14 AM Ticket #834 (Trashcan cannot be emptied) closed by Nicklas Nordborg
invalid: Since there is no new information about this, I close this ticket as …
7:44 AM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
Priority, Description, Milestone changed
7:44 AM Ticket #933 (Create extension points for some selected places in the web client) created by Nicklas Nordborg
Depends on #436. An extension point is needed in the bioassayset tree …
7:41 AM Ticket #932 (Convert the MeV launcher to an extension) created by Nicklas Nordborg
Depends on #436
7:38 AM Ticket #927 (Image Macro fails on Feature Trac Page) updated by Nicklas Nordborg
Milestone changed

Feb 20, 2008:

3:00 PM Ticket #436 (Create extension system for the web application) updated by Nicklas Nordborg
Summary, Status, Description changed
11:46 AM Changeset [4151] by Martin Svensson
Base-hacks site has been moved to a new location - updated links
11:25 AM Changeset [4150] by Martin Svensson
Base-hacks has been moved to a new location - updated link in documentation
10:49 AM DeveloperInformation edited by Nicklas Nordborg
Location for testdata has changed (diff)

Feb 19, 2008:

12:53 PM Ticket #552 (Write "API overview" section) updated by Martin Svensson
Description changed
Documentation has been moved - updated link
12:51 PM Ticket #550 (Write "Overview of BASE" section in Developer documentation part) updated by Martin Svensson
Description changed
Documentation has been moved - updated link
12:50 PM Ticket #621 (Write 'Plate' section) closed by Martin Svensson
duplicate: see #617
12:49 PM Ticket #617 (Write plate management in array LIMS) updated by Martin Svensson
Description changed
Added a link to the section
12:41 PM Ticket #600 (Write "Appendix: Other configuration files") updated by Martin Svensson
Description changed
Documentation has been moved - updated link
12:40 PM Ticket #599 (Write "Appendix: migrate.properties reference") updated by Martin Svensson
Description changed
Documentation has been moved - updated link
12:39 PM Ticket #597 (Read "Appendix: web.xml reference") updated by Martin Svensson
Description changed
Documentation has been moved - updated link
12:37 PM Ticket #532 (Read "Jobs" section) updated by Martin Svensson
Description changed
Documentation has been moved - updated link
11:24 AM Ticket #522 (Write "Why use BASE" section) updated by Martin Svensson
Description changed
Documentation has been moved - updated link
11:22 AM Ticket #523 (Write "Overview of BASE" section in Overview part) updated by Martin Svensson
Description changed
Documentation has been moved - updated the link
11:19 AM Ticket #546 (Write "Experiments and analysis" section.) updated by Martin Svensson
Description changed
11:17 AM Ticket #621 (Write 'Plate' section) updated by Martin Svensson
Description changed
11:00 AM Changeset [4149] by Martin Svensson
Fixed some typos in the documentation
8:36 AM Ticket #930 (Read 'Server settings' section) closed by Nicklas Nordborg
fixed: (In [4148]) Fixes #930: Read 'Server settings' section
8:36 AM Changeset [4148] by Nicklas Nordborg
Fixes #930: Read 'Server settings' section
8:03 AM Ticket #930 (Read 'Server settings' section) updated by Nicklas Nordborg
Status, Owner changed

Feb 18, 2008:

2:34 PM Ticket #896 (Stop generating too long URL:s) closed by Nicklas Nordborg
fixed: Have now worked through the 'roles' test procedure and not found any …
2:18 PM Changeset [4147] by Nicklas Nordborg
References #868: Support for chips with multiple arrays Fixes broken …
2:18 PM Ticket #868 (Support for chips with multiple arrays) updated by Nicklas Nordborg
(In [4147]) References #868: Support for chips with multiple arrays …
2:15 PM Changeset [4146] by Martin Svensson
Typo
1:16 PM Ticket #909 (Move some static fields from AbstractFlatFileImporter to a separate class) updated by Nicklas Nordborg
(In [4145]) References #909: Move some static fields from …
1:16 PM Changeset [4145] by Nicklas Nordborg
References #909: Move some static fields from AbstractFlatFileImporter
11:37 AM Ticket #930 (Read 'Server settings' section) updated by Martin Svensson
Description, Status, Owner, Priority, Summary changed
11:33 AM Changeset [4144] by Martin Svensson
References #930 Ready for reading
11:33 AM Ticket #930 (Read 'Server settings' section) updated by Martin Svensson
(In [4144]) References #930 Ready for reading

Feb 15, 2008:

2:21 PM Ticket #903 (Experiment Explorer is slow) updated by Nicklas Nordborg
I guess deletions may suffer from the same problems as insertions. I …
1:41 PM Ticket #896 (Stop generating too long URL:s) updated by Nicklas Nordborg
(In [4143]) References #896: Stop generating too long URL:s The POST …
1:41 PM Changeset [4143] by Nicklas Nordborg
References #896: Stop generating too long URL:s The POST is now in …
1:40 PM Ticket #896 (Stop generating too long URL:s) updated by Nicklas Nordborg
Priority, Owner, Milestone, Status changed
I'll change the "GET" request to a "POST" instead. The only issue with …
12:14 PM Ticket #903 (Experiment Explorer is slow) updated by base
No problem. Happy to do what ever testing time permits. I did forget …
10:30 AM Ticket #931 (Share items to EVERYONE without SHARE_TO_EVERYONE permission) closed by Nicklas Nordborg
fixed: (In [4142]) Fixes #931: Share items to EVERYONE without …
10:30 AM Changeset [4142] by Nicklas Nordborg
Fixes #931: Share items to EVERYONE without SHARE_TO_EVERYONE permission
9:59 AM Ticket #931 (Share items to EVERYONE without SHARE_TO_EVERYONE permission) updated by Nicklas Nordborg
Owner, Status changed
9:59 AM Ticket #931 (Share items to EVERYONE without SHARE_TO_EVERYONE permission) created by Nicklas Nordborg
This is somewhat related to ticket #929. It seems like there is …
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