Timeline



Sep 21, 2007:

4:35 PM Changeset [3766] by Martin Svensson
Reference #524 A start
3:41 PM Changeset [3765] by Martin Svensson
References #364, Correct inconsistent variable/property 'plugin.dir' …
3:41 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3765]) References #364, Correct inconsistent variable/property …
2:51 PM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3764]) References #721. Added data layer classes and some core …
2:51 PM Changeset [3764] by Nicklas Nordborg
References #721. Added data layer classes and some core classes.
2:44 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) reopened by Johan Vallon-Christersson
To display the experimental factors in a similar way as in the …
2:35 PM Changeset [3763] by Martin Svensson
References #364, Added instructions how to make ant put …
2:35 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3763]) References #364, Added instructions how to make ant put …
1:34 PM Ticket #772 (Exporting features from Array designs) updated by Nicklas Nordborg
Component, Milestone changed
It is probably a bug.
1:19 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) updated by Nicklas Nordborg
Inherited annotations can't be viewed in the list views, only …
12:38 PM Ticket #769 (Trying to configure AnnotationTypeCvImporter.jar) updated by base
yes that was the problem. Sorry! Bad typo.
10:47 AM Ticket #773 (Filter reporter table using array design) created by Johan Vallon-Christersson
It would be useful to filter reporter table using Array design. This …
10:39 AM Ticket #772 (Exporting features from Array designs) created by Johan Vallon-Christersson
When trying to export features from an array design (from the features …
10:27 AM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) updated by Johan Vallon-Christersson
Working on the onk installation BASE 2.4.1 (build #3722; schema #40) I …
10:20 AM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) updated by Johan Vallon-Christersson
I agree that it is logical to have the filter plugin configured …
10:01 AM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) updated by Jari Häkkinen
Shouldn't the JEP filter plugin come properly configured out-of-the-box?
9:49 AM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) updated by Johan Vallon-Christersson
I can verify that the plugin lacked permission to read reporter list. …
9:32 AM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) updated by Jari Häkkinen
In which version?
9:31 AM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) updated by Jari Häkkinen
Browsing through the jobs I notice that this is the problem occurs …
9:18 AM Tickets #411,​746,​554 batch updated by Nicklas Nordborg
(In [3762]) References #554, #746 and fixes #411. File and directories …
9:18 AM Changeset [3762] by Nicklas Nordborg
References #554, #746 and fixes #411. File and directories diagram …
8:36 AM Ticket #411 (Extending compressed file support and storage) updated by Nicklas Nordborg
Description changed
8:15 AM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
Description changed
7:55 AM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
Description changed

Sep 20, 2007:

11:12 PM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) updated by Nicklas Nordborg
Milestone, Component, Summary changed
I think it is the plug-in you are running that lacks permission to the …
11:03 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) closed by Nicklas Nordborg
worksforme: This has already been implemented.
8:03 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) created by Johan Vallon-Christersson
When viewing the bioassay table in a Bioassayset, allow the user to …
7:49 PM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) created by Johan Vallon-Christersson
Trying to run a filter that use my own Reporter list. Get error: …
4:57 PM Ticket #769 (Trying to configure AnnotationTypeCvImporter.jar) closed by Nicklas Nordborg
invalid: The first problem is related to ticket #655 which partly will be fixed …
4:37 PM Ticket #769 (Trying to configure AnnotationTypeCvImporter.jar) created by base
Went to Administrate -> Plugins > Definitions Got this non fatal …
3:56 PM Ticket #524 (Read "Overview of user documentation" section) updated by Martin Svensson
Description changed
3:47 PM Changeset [3761] by Martin Svensson
Fixes #689 Increase 99 hits per page limit (list views). The limit is …
3:47 PM Ticket #689 (Increase 99 hits per page limit (list views)) closed by Martin Svensson
fixed: (In [3761]) Fixes #689 Increase 99 hits per page limit (list views). …
2:56 PM Ticket #689 (Increase 99 hits per page limit (list views)) updated by Martin Svensson
Status, Owner changed
2:27 PM Ticket #759 (Automatically name Affymetrix array design after the name of the ...) closed by Nicklas Nordborg
wontfix: I just realized that once ticket #721 is fixed this can't be done.
1:35 PM Changeset [3760] by Martin Svensson
Fixes #364, Uses the existing JarClassLoader, when reading/loading …
1:35 PM Ticket #364 (Support for automatic install of non-core plugins) closed by Martin Svensson
fixed: (In [3760]) Fixes #364, Uses the existing JarClassLoader, when …
11:24 AM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3759]) References #364, documentation
11:23 AM Changeset [3759] by Martin Svensson
References #364, documentation
10:53 AM Ticket #621 (Write 'Plate' section) updated by Nicklas Nordborg
Component changed
10:39 AM Ticket #768 (Add information about running reporter update after migration if needed) updated by Jari Häkkinen
Status, Owner changed
10:39 AM Ticket #768 (Add information about running reporter update after migration if needed) created by Jari Häkkinen
9:54 AM Changeset [3758] by Nicklas Nordborg
Branch for working with ticket #721: Store data in files instead of in …
9:50 AM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3757]) References #721: Store data in files instead of in the …
9:50 AM Changeset [3757] by Nicklas Nordborg
References #721: Store data in files instead of in the database …
9:12 AM Changeset [3756] by Nicklas Nordborg
Allow 'entrytbl' tags to have a 'frame' attribute in the same way as …

Sep 19, 2007:

2:36 PM Changeset [3755] by Martin Svensson
References #364, documentation
2:36 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3755]) References #364, documentation
1:39 PM Ticket #767 (Migration fails if more than one user has the same quota) closed by Nicklas Nordborg
fixed: (In [3754]) Fixes #767: Migration fails if more than one user has the …
1:38 PM Changeset [3754] by Nicklas Nordborg
Fixes #767: Migration fails if more than one user has the same quota
1:25 PM Ticket #767 (Migration fails if more than one user has the same quota) updated by Nicklas Nordborg
Status changed
1:25 PM Ticket #767 (Migration fails if more than one user has the same quota) created by Nicklas Nordborg
The stacktrace is: […] The migration will create new quota items, …

Sep 18, 2007:

3:47 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3753]) References #364, documentation
3:47 PM Changeset [3753] by Martin Svensson
References #364, documentation
1:35 PM Ticket #524 (Read "Overview of user documentation" section) updated by Martin Svensson
Status, Owner changed
10:17 AM Ticket #732 (Link to basehacks has disappeard) closed by Jari Häkkinen
fixed: The information was already in 3rd-party-components.txt. This …
10:13 AM Changeset [3752] by Jari Häkkinen
Addresses #732.
10:13 AM Ticket #732 (Link to basehacks has disappeard) updated by Jari Häkkinen
(In [3752]) Addresses #732.
10:06 AM Ticket #617 (Write plate management in array LIMS) updated by Johan Enell
Status, Owner changed
9:45 AM ReleaseProcedure edited by Jari Häkkinen
Added item about updating link to latest stable BASE docs. (diff)
9:37 AM Changeset [3751] by Nicklas Nordborg
References #411. Migration should now automatically compress files …
9:37 AM Ticket #411 (Extending compressed file support and storage) updated by Nicklas Nordborg
(In [3751]) References #411. Migration should now automatically …
9:28 AM Ticket #411 (Extending compressed file support and storage) updated by Nicklas Nordborg
(In [3750]) References #411. Compiled AffxFusion.jar with target="1.5" …
9:28 AM Changeset [3750] by Nicklas Nordborg
References #411. Compiled AffxFusion.jar with target="1.5" to make it …
9:21 AM Ticket #761 (Not equal in filter doesn't support wildcards) closed by Nicklas Nordborg
fixed: (In [3749]) Fixes #761: Not equal in filter doesn't support wildcards
9:21 AM Changeset [3749] by Nicklas Nordborg
Fixes #761: Not equal in filter doesn't support wildcards
9:02 AM Ticket #761 (Not equal in filter doesn't support wildcards) updated by Nicklas Nordborg
Status changed
9:02 AM Ticket #765 (Deleting an Affymetrix raw bioassay from trashcan generates ...) closed by Nicklas Nordborg
fixed: (In [3748]) Fixes #765: Deleting an Affymetrix raw bioassay from …
9:02 AM Changeset [3748] by Nicklas Nordborg
Fixes #765: Deleting an Affymetrix raw bioassay from trashcan …
8:59 AM Ticket #766 (Batchers may be registered with a DbControl even if constructor throw ...) closed by Nicklas Nordborg
fixed: (In [3747]) Fixes #766: Batchers may be registered with a DbControl
8:59 AM Changeset [3747] by Nicklas Nordborg
Fixes #766: Batchers may be registered with a DbControl even if …
8:33 AM Ticket #766 (Batchers may be registered with a DbControl even if constructor throw ...) updated by Nicklas Nordborg
Status, Owner changed
8:33 AM Ticket #765 (Deleting an Affymetrix raw bioassay from trashcan generates ...) updated by Nicklas Nordborg
Status, Owner changed
See ticket #766 for more info about what is going on here.
8:32 AM Ticket #766 (Batchers may be registered with a DbControl even if constructor throw ...) created by Nicklas Nordborg
This issue is related to #765. What is happening there is that a …

Sep 17, 2007:

8:14 PM Ticket #765 (Deleting an Affymetrix raw bioassay from trashcan generates ...) updated by Nicklas Nordborg
Priority, Milestone, Component changed
8:13 PM Ticket #765 (Deleting an Affymetrix raw bioassay from trashcan generates ...) created by Nicklas Nordborg
Dominic Oyeniran wrote: > I am experiencing the problem with deletion …
8:08 PM Ticket #764 (Selecting Bioassays in the plot tool.) updated by Nicklas Nordborg
Type changed
3:14 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) updated by Nicklas Nordborg
Milestone changed
3:14 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) updated by Nicklas Nordborg
(In [3746]) References #655: Plugins -> defintions fails with 'illegal …
3:14 PM Changeset [3746] by Nicklas Nordborg
References #655: Plugins -> defintions fails with 'illegal attempt to …
3:10 PM Ticket #751 (Fail to delete item from table view) updated by Jari Häkkinen
This might be a problem due to very heavy load on mysql/tomcat during …
3:07 PM Changeset [3745] by Nicklas Nordborg
Fixes #752: Configuration parameters not preserved when Plugin …
3:07 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) closed by Nicklas Nordborg
fixed: (In [3745]) Fixes #752: Configuration parameters not preserved when …
3:07 PM Ticket #764 (Selecting Bioassays in the plot tool.) created by Johan Vallon-Christersson
Suggested enhancements for plot functionality would enable useful plot …
3:04 PM Changeset [3744] by Martin Svensson
Fixes #763
3:04 PM Ticket #763 (Unresolved id:s in documentation) closed by Martin Svensson
fixed: (In [3744]) Fixes #763
3:03 PM Ticket #763 (Unresolved id:s in documentation) reopened by Martin Svensson
The links don't work to terms inside varlistentry
2:53 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) updated by Nicklas Nordborg
Status, Owner changed
2:47 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) updated by Johan Enell
Version changed
* Create a plugin configuration * Edit your configuration * Copy …
2:47 PM Changeset [3743] by Nicklas Nordborg
Fixes #753: NullPointerException in plugin configuration list
2:47 PM Ticket #753 (NullPointerException in plugin configuration list) closed by Nicklas Nordborg
fixed: (In [3743]) Fixes #753: NullPointerException in plugin configuration list
2:46 PM Ticket #753 (NullPointerException in plugin configuration list) updated by Nicklas Nordborg
The same problem also appears on the single-item view page and on the …
2:16 PM RobotsTxt edited by Jari Häkkinen
(diff)
2:08 PM Ticket #751 (Fail to delete item from table view) updated by Jari Häkkinen
Milestone changed
2:06 PM Ticket #749 (TAR files with long files names are not supported) updated by Jari Häkkinen
Milestone changed
We are waiting for apache project to finish their code.
2:05 PM Ticket #742 (Refactor BioAssaySetExporter) updated by Jari Häkkinen
Milestone changed
2:05 PM Ticket #741 (Refactor Base1PluginExecuter) updated by Jari Häkkinen
Milestone changed
2:04 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) updated by Jari Häkkinen
Milestone changed
2:03 PM Ticket #748 (MeV application fail to load data) updated by Jari Häkkinen
Owner, Status, Milestone changed
2:02 PM Ticket #738 (Implement file upload as a pure servlet) updated by Jari Häkkinen
Milestone changed
2:02 PM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) updated by Jari Häkkinen
Milestone changed
2:01 PM Ticket #734 (Un-caught NullPointerException in plugin configurations list view.) closed by Jari Häkkinen
duplicate: Duplicate of ticket:753
1:59 PM Ticket #729 (./jobagent.sh should accept command `status`) updated by Jari Häkkinen
Milestone changed
1:49 PM Ticket #732 (Link to basehacks has disappeard) updated by Jari Häkkinen
Status changed
1:49 PM Ticket #185 (Refactor the Item class and DbControl and more...) updated by Jari Häkkinen
Priority changed
1:40 PM DeveloperInformation edited by Jari Häkkinen
(diff)
1:29 PM Ticket #753 (NullPointerException in plugin configuration list) updated by Nicklas Nordborg
Description, Status, Summary changed
1:25 PM WikiStart edited by Jari Häkkinen
Only show latest docs on first page. (diff)
1:16 PM Changeset [3742] by Nicklas Nordborg
Fixes #735: PermissionDeniedException on array design list view
1:16 PM Ticket #735 (PermissionDeniedException on array design list view) closed by Nicklas Nordborg
fixed: (In [3742]) Fixes #735: PermissionDeniedException on array design list view
1:16 PM Ticket #735 (PermissionDeniedException on array design list view) updated by Nicklas Nordborg
Component changed
1:16 PM Ticket #763 (Unresolved id:s in documentation) closed by Martin Svensson
wontfix: Seems to be some problem in the pdf-generator because the ids exists …
1:12 PM Ticket #735 (PermissionDeniedException on array design list view) updated by Nicklas Nordborg
Status, Owner changed
1:10 PM Ticket #758 (Store number of features in a database column of ArrayDesign) closed by Nicklas Nordborg
fixed: (In [3741]) Fixes #758: Store number of features in a database column …
1:10 PM Changeset [3741] by Nicklas Nordborg
Fixes #758: Store number of features in a database column of ArrayDesign
1:09 PM Ticket #763 (Unresolved id:s in documentation) updated by Martin Svensson
Status changed
1:08 PM Ticket #763 (Unresolved id:s in documentation) created by Martin Svensson
There are some complaints about unresolved ids when generating the …
12:58 PM Ticket #733 (Add support to select plugin configurations that should be imported) closed by Martin Svensson
fixed: (In [3740]) Fixes #733 Documentation
12:58 PM Changeset [3740] by Martin Svensson
Fixes #733 Documentation
9:48 AM WikiStart edited by Jari Häkkinen
Documentation moved somewhat to make place for trunk and latest stable … (diff)
9:29 AM Changeset [3739] by Jari Häkkinen
Removed invalid help info regarding 'ant doc' and 'ant docbook'.
9:29 AM Changeset [3738] by Jari Häkkinen
Removed invalid help info regarding 'ant doc' and 'ant docbook'.
9:28 AM Ticket #411 (Extending compressed file support and storage) updated by Nicklas Nordborg
(In [3737]) Added modified AffxFusion?.jar that can read from …
9:23 AM Changeset [3737] by Nicklas Nordborg
Added modified AffxFusion.jar that can read from InputStream for some …
8:24 AM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
Description changed

Sep 16, 2007:

8:09 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) updated by Nicklas Nordborg
Component, Milestone changed
It would be great to have this functionality. The syntax needs to be …
7:56 PM Ticket #761 (Not equal in filter doesn't support wildcards) updated by Nicklas Nordborg
Priority, Summary, Component, Milestone changed
Well, the filter does work. The problem is that it doesn't support the …

Sep 14, 2007:

4:22 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) created by Johan Vallon-Christersson
Expand the list of operators supported by the free-text filter. Add …
4:16 PM not_equal_bug.png attached to Ticket #761 by Johan Enell
4:16 PM Ticket #761 (Not equal in filter doesn't support wildcards) created by Johan Enell
When I try to filter a String column with not equal ( <> ) it does nothing.
3:54 PM Changeset [3736] by Johan Enell
3:52 PM Changeset [3735] by Johan Enell
removed some system.out lines…
3:51 PM Ticket #760 (Make the Base1PluginExecuter use position batcher again.) closed by Johan Enell
fixed: (In [3734]) Fixes #760
3:51 PM Changeset [3734] by Johan Enell
Fixes #760
2:08 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3733]) References #364 The functionallity is more or less done. …
2:08 PM Changeset [3733] by Martin Svensson
References #364 The functionallity is more or less done. The internal …
2:03 PM Changeset [3732] by Martin Svensson
References #733 The PluginConfigurationImporter class can be used …
2:03 PM Ticket #733 (Add support to select plugin configurations that should be imported) updated by Martin Svensson
(In [3732]) References #733 The PluginConfigurationImporter class can …
12:52 PM Ticket #760 (Make the Base1PluginExecuter use position batcher again.) updated by Nicklas Nordborg
Summary, Description changed
11:25 AM Ticket #760 (Make the Base1PluginExecuter use position batcher again.) created by Johan Enell
10:59 AM Ticket #731 (Extend mapping in Base1PluginExecuter) closed by Johan Enell
fixed: (In [3731]) Fixes #731 Added mapping for all hard coded data. …
10:59 AM Changeset [3731] by Johan Enell
Fixes #731 Added mapping for all hard coded data. Corrected some …
9:57 AM Ticket #735 (PermissionDeniedException on array design list view) updated by Nicklas Nordborg
Priority, Milestone changed
I think we need a try-catch around the problematic part in …
8:41 AM Ticket #759 (Automatically name Affymetrix array design after the name of the ...) created by Nicklas Nordborg
The file name is actually used to verify that a CEL file matches the …
8:28 AM Ticket #758 (Store number of features in a database column of ArrayDesign) updated by Nicklas Nordborg
Owner, Status changed
8:28 AM Ticket #758 (Store number of features in a database column of ArrayDesign) created by Nicklas Nordborg
The current implementation doesn't store this information. We must …

Sep 13, 2007:

4:32 PM Changeset [3730] by Johan Enell
Fixes #757
4:32 PM Ticket #757 (BASEFile export wrong name for external id) closed by Johan Enell
fixed: (In [3730]) Fixes #757
4:17 PM Ticket #757 (BASEFile export wrong name for external id) created by Johan Enell
The name for the externl id of a reporter should be reporterId.
4:08 PM Changeset [3729] by Johan Enell
Fixes #739 Removes AnyToAny
4:08 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) closed by Johan Enell
fixed: (In [3729]) Fixes #739 Removes AnyToAny
3:46 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) reopened by Johan Enell
The AnyToAny link should also be removed.
3:42 PM Ticket #756 (BioAssaySetExporter BASEFile) closed by Johan Enell
fixed: (In [3728]) Fixes #756
3:42 PM Changeset [3728] by Johan Enell
Fixes #756
3:34 PM Ticket #756 (BioAssaySetExporter BASEFile) created by Johan Enell
The ExtraValue names should be exported with the prefix _xc_
3:32 PM Changeset [3727] by Johan Enell
Fixes #739
3:32 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) closed by Johan Enell
fixed: (In [3727]) Fixes #739
2:20 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) updated by Johan Enell
Status changed
2:19 PM Changeset [3726] by Johan Enell
Fixes #755
2:19 PM Ticket #755 (Base1PluginExecuter permission) closed by Johan Enell
fixed: (In [3726]) Fixes #755
2:18 PM Ticket #755 (Base1PluginExecuter permission) created by Johan Enell
The Base1PluginExecuter needs CREATE and USE permisison on ExtraValueType
12:59 AM Changeset [3725] by Jari Häkkinen
Merged patch release 2.4.1 to the trunk. Delta 2.4.1 - 2.4.
12:58 AM ReleaseProcedure edited by Jari Häkkinen
(diff)
12:55 AM Changeset [3724] by Jari Häkkinen
Merged patch release 2.4.1 to the webservices bracnh. Delta 2.4.1 - 2.4.
12:37 AM Milestone BASE 2.4.1 completed
Revision Log: log:branches/2.4-stable@3693:3722
12:37 AM ReleaseProcedure edited by Jari Häkkinen
(diff)
12:35 AM Ticket #744 (Make it possible to resume the migration program in case of a failure) closed by Jari Häkkinen
fixed
12:32 AM DownloadPage edited by Jari Häkkinen
Releasing 2.4.1 (diff)
12:20 AM Changeset [3723] by Jari Häkkinen
Changes for future release 2.4.2
12:06 AM Changeset [3722] by Jari Häkkinen
Tagging release 2.4.1

Sep 12, 2007:

10:25 PM Changeset [3721] by Jari Häkkinen
Preparing release 2.4.1
4:36 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) updated by Johan Enell
Owner changed
4:01 PM Ticket #733 (Add support to select plugin configurations that should be imported) updated by Martin Svensson
(In [3720]) References #733. The PluginConfigurationImporter can now …
4:01 PM Changeset [3720] by Martin Svensson
References #733. The PluginConfigurationImporter can now import a …
3:03 PM Ticket #411 (Extending compressed file support and storage) updated by Nicklas Nordborg
(In [3719]) References #411: Most of the basic functionality is now in …
3:02 PM Changeset [3719] by Nicklas Nordborg
References #411: Most of the basic functionality is now in place and …
2:57 PM Ticket #751 (Fail to delete item from table view) updated by Nicklas Nordborg
If the page doesn't refresh, there is probably some error somewhere. …
2:55 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) updated by Nicklas Nordborg
Please provide step-by-step instruction about how to reproduce this. …
1:31 PM Ticket #753 (NullPointerException in plugin configuration list) updated by Johan Enell
I think the exception comes from line 492 in the file …
1:28 PM Changeset [3718] by Johan Enell
References #753 Added null check in the NameablePluginAdaptor
1:28 PM Ticket #753 (NullPointerException in plugin configuration list) updated by Johan Enell
(In [3718]) References #753 Added null check in the NameablePluginAdaptor
1:01 PM Changeset [3717] by Johan Enell
removed some unused code
1:00 PM Ticket #754 (Base1PluginExecuter throws NullPointer) closed by Johan Enell
fixed: (In [3716]) Fixes #754
1:00 PM Changeset [3716] by Johan Enell
Fixes #754
11:51 AM Ticket #754 (Base1PluginExecuter throws NullPointer) created by Johan Enell
The Base1PluginExecuter throws a NullPointer from the isInContext method.
11:29 AM Ticket #753 (NullPointerException in plugin configuration list) created by Johan Enell
If I try to list plugin configurations (with the definition column) …
11:18 AM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) updated by Johan Vallon-Christersson
Enell suggests that it might be a problem with version handling, …
10:59 AM Ticket #751 (Fail to delete item from table view) updated by Johan Vallon-Christersson
Replying to nicklas: > Any error messages? It works fine …
10:45 AM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) updated by Johan Vallon-Christersson
Replying to nicklas: > This sounds like you have mixed up …

Sep 11, 2007:

8:57 PM Ticket #750 (Raw bioassays: display plugin configuration used to import data) closed by Nicklas Nordborg
wontfix: This information is not stored so it can't be displayed.
8:57 PM Ticket #751 (Fail to delete item from table view) updated by Nicklas Nordborg
Any error messages? It works fine when I try it.
8:55 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) updated by Nicklas Nordborg
This sounds like you have mixed up your configurations. I am not able …
4:37 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) created by Johan Vallon-Christersson
When creating a new Plugin configuration by copying an existing …
4:10 PM Ticket #751 (Fail to delete item from table view) created by Johan Vallon-Christersson
When in table view an item is marked (by check box). Selecting delete …
3:52 PM Ticket #750 (Raw bioassays: display plugin configuration used to import data) created by Johan Vallon-Christersson
For Raw bioassays display the plugin and plugin configuration used to …
2:03 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) reopened by Nicklas Nordborg
We never fixed the "Add file format" button from the auto-detect file …
1:19 PM Ticket #411 (Extending compressed file support and storage) updated by Nicklas Nordborg
Status changed
1:13 PM Tickets #746,​554 batch updated by Nicklas Nordborg
(In [3715]) References #746 and #554. Added new new UML file for …
1:13 PM Changeset [3715] by Nicklas Nordborg
References #746 and #554. Added new new UML file for MagicDraw 12.5. …
1:11 PM Ticket #554 (Write "Core developer reference.") updated by Nicklas Nordborg
Description changed
12:56 PM Ticket #749 (TAR files with long files names are not supported) created by Nicklas Nordborg
The package for TAR that is used in BASE …

Sep 10, 2007:

4:17 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3714]) References #364.
4:17 PM Changeset [3714] by Martin Svensson
References #364.
2:42 PM Ticket #748 (MeV application fail to load data) created by Johan Vallon-Christersson
When trying to launch MeV (through the BASE 2 demo site) data fails to …

Sep 7, 2007:

11:23 AM Ticket #744 (Make it possible to resume the migration program in case of a failure) updated by Jari Häkkinen
(In [3713]) Addresses #744. Added information about migration restart …
11:23 AM Changeset [3713] by Jari Häkkinen
Addresses #744. Added information about migration restart do documentation.

Sep 6, 2007:

10:48 PM Ticket #747 (Problem trying to install RMAExpress plugin on Windows) updated by Nicklas Nordborg
...or you could also use 1.6…
10:46 PM Ticket #747 (Problem trying to install RMAExpress plugin on Windows) closed by Nicklas Nordborg
invalid: I think I have seen this before... It was a long time ago (before BASE …
9:28 PM Ticket #747 (Problem trying to install RMAExpress plugin on Windows) updated by base
jessepaquette@… I hope this is what I was supposed to do. …
9:25 PM Ticket #747 (Problem trying to install RMAExpress plugin on Windows) created by base
java.lang.ClassFormatError on page …
2:56 PM Changeset [3712] by Martin Svensson
References #364. Most of the plugin settings can be saved now, but …
2:56 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3712]) References #364. Most of the plugin settings can be saved …
1:56 PM Ticket #728 (./jobagent.sh start does not work) closed by Nicklas Nordborg
invalid: This is as expected. The script by default only looks in the current …
12:28 PM Ticket #746 (Transfer existing (data-layer) UML diagrams to latest MagicDraw) updated by Nicklas Nordborg
I will start with this and draw some of the old diagrams, some new …
12:26 PM Ticket #746 (Transfer existing (data-layer) UML diagrams to latest MagicDraw) updated by Nicklas Nordborg
Owner, Status changed
12:26 PM Ticket #746 (Transfer existing (data-layer) UML diagrams to latest MagicDraw) created by Nicklas Nordborg
MagicDraw now has a free "Community Edition" that is designed for open …
9:47 AM Changeset [3711] by Nicklas Nordborg
Fixes #736: Incorrect error message is displayed if a file upload fails
9:47 AM Ticket #736 (Incorrect error message is displayed if a file upload fails) closed by Nicklas Nordborg
fixed: (In [3711]) Fixes #736: Incorrect error message is displayed if a file …
9:39 AM Ticket #736 (Incorrect error message is displayed if a file upload fails) updated by Nicklas Nordborg
Owner, Status changed
9:39 AM Changeset [3710] by Nicklas Nordborg
Fixes #745: NullPointerException in File.getSize() References #628 and …
9:39 AM Tickets #575,​628,​745 batch updated by Nicklas Nordborg
(In [3710]) Fixes #745: NullPointerException in File.getSize() …
9:32 AM Ticket #745 (NullPointerException in File.getSize()) updated by Nicklas Nordborg
Status, Owner changed
9:32 AM Ticket #745 (NullPointerException in File.getSize()) created by Nicklas Nordborg
I get a NullPointerException in File.getSize() after a migration with …
9:28 AM Ticket #744 (Make it possible to resume the migration program in case of a failure) updated by Nicklas Nordborg
(In [3709]) References #744: Make it possible to resume the migration …
9:28 AM Changeset [3709] by Nicklas Nordborg
References #744: Make it possible to resume the migration program in …

Sep 5, 2007:

5:48 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3708]) References #364 Configuring the installation is allmost done.
5:48 PM Changeset [3708] by Martin Svensson
References #364 Configuring the installation is allmost done.
11:45 AM Ticket #744 (Make it possible to resume the migration program in case of a failure) updated by Nicklas Nordborg
Status, Owner changed
11:42 AM Ticket #744 (Make it possible to resume the migration program in case of a failure) created by Nicklas Nordborg
The migration program can take a very long time to run if there is a …
11:33 AM Ticket #743 (Scientific numbers with a + sign in the exponent are not parsed correctly) closed by Nicklas Nordborg
fixed: Fixed in [3703]
11:33 AM Ticket #743 (Scientific numbers with a + sign in the exponent are not parsed correctly) created by Nicklas Nordborg
we have noted that none of the value in the data file such as …
11:29 AM Changeset [3707] by Nicklas Nordborg
Fixes #740: Missing AnyToAny item causes ItemNotFoundException when …
11:29 AM Ticket #740 (Missing AnyToAny item causes ItemNotFoundException when viewing a ...) closed by Nicklas Nordborg
fixed: (In [3707]) Fixes #740: Missing AnyToAny item causes …
11:03 AM Ticket #731 (Extend mapping in Base1PluginExecuter) updated by Jari Häkkinen
Summary, Description changed
9:47 AM Ticket #740 (Missing AnyToAny item causes ItemNotFoundException when viewing a ...) updated by Nicklas Nordborg
Status, Owner changed
9:33 AM Ticket #741 (Refactor Base1PluginExecuter) updated by Nicklas Nordborg
Description changed
9:33 AM Ticket #742 (Refactor BioAssaySetExporter) created by Nicklas Nordborg
There has been requests on the mailing list to be able to subclass the …
9:32 AM Ticket #741 (Refactor Base1PluginExecuter) created by Nicklas Nordborg
There has been requests on the mailing list to be able to subclass the …
9:15 AM Ticket #740 (Missing AnyToAny item causes ItemNotFoundException when viewing a ...) created by Nicklas Nordborg
A transformation may have AnyToAny links to other items (files). Due …
9:03 AM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) created by Nicklas Nordborg
The stdin.txt is always deleted and the stdout.txt is always kept. The …

Sep 3, 2007:

8:34 AM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) updated by Nicklas Nordborg
The extra new line is converted into a call to out.print("\n")
8:34 AM Ticket #738 (Implement file upload as a pure servlet) created by Nicklas Nordborg
The JSP:s used for file upload are sensitive to line breaks in the JSP …

Aug 31, 2007:

9:38 AM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) updated by Jari Häkkinen
Status, Owner changed
I'll add an ticket to the svndigest project and request that they …

Aug 30, 2007:

11:07 PM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) created by Nicklas Nordborg
I am not sure if the extra new line at the end of …
10:58 PM Ticket #736 (Incorrect error message is displayed if a file upload fails) created by Nicklas Nordborg
The JSP page that should take care of the error and display it has a …
3:59 PM Changeset [3706] by Martin Svensson
References #364 Started updating the GUI to support auto installation …
3:59 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3706]) References #364 Started updating the GUI to support auto …

Aug 29, 2007:

8:50 PM Changeset [3705] by Peter Johansson
refs #639
8:50 PM Ticket #639 (exportPureMatrix method) updated by Peter Johansson
(In [3705]) refs #639

Aug 28, 2007:

4:42 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3704]) References #364 Moved the PluginInfo class to another …
4:42 PM Changeset [3704] by Martin Svensson
References #364 Moved the PluginInfo class to another package, added a …
4:21 PM Ticket #735 (PermissionDeniedException on array design list view) updated by base
yes that fixed it (sharing the cdf file to Everyone).
4:20 PM Ticket #735 (PermissionDeniedException on array design list view) created by base
As a normal user, another blank list view with the following in …
3:37 PM Ticket #734 (Un-caught NullPointerException in plugin configurations list view.) created by base
As an admin user I can create and view plugin configurations fine. As …
3:29 PM Ticket #733 (Add support to select plugin configurations that should be imported) updated by Martin Svensson
Description changed

Aug 27, 2007:

12:56 PM Ticket #733 (Add support to select plugin configurations that should be imported) updated by Martin Svensson
Status, Milestone, Description changed
12:53 PM Ticket #733 (Add support to select plugin configurations that should be imported) created by Martin Svensson
The plugin-configuration-importer plugin should offer a possibility …
10:03 AM Changeset [3703] by Martin Svensson
Fixes the problem with '+' before the exponent (when its 0). The '+' …

Aug 24, 2007:

3:39 PM Ticket #706 (Averagemethod on raw data types) updated by Jari Häkkinen
Summary changed
3:39 PM Ticket #667 (Move ch. 7 to a lower level) updated by Jari Häkkinen
Status, Owner changed
3:38 PM Ticket #593 (Write "Appendix: Core plug-ins shipped with BASE") updated by Jari Häkkinen
Status, Owner changed
3:37 PM Ticket #732 (Link to basehacks has disappeard) updated by Jari Häkkinen
(In [3702]) Addresses #732. Fixing broken basehacks link.
3:37 PM Changeset [3702] by Jari Häkkinen
Addresses #732. Fixing broken basehacks link.
3:36 PM Changeset [3701] by Jari Häkkinen
Addresses #732. Fixing broken basehacks link.
3:36 PM Ticket #732 (Link to basehacks has disappeard) updated by Jari Häkkinen
(In [3701]) Addresses #732. Fixing broken basehacks link.
1:53 PM Ticket #732 (Link to basehacks has disappeard) created by Jari Häkkinen
We need to keep a link to http://trac.thep.lu.se/trac/basehacks
10:44 AM Ticket #731 (Extend mapping in Base1PluginExecuter) created by Johan Enell
The mapping in the executer should be extended. For instance …

Aug 23, 2007:

1:42 PM Changeset [3700] by Martin Svensson
References #364 The main functions in core is now done for this. A …
1:42 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3700]) References #364 The main functions in core is now done for …
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