Timeline



Aug 31, 2007:

9:38 AM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) updated by Jari Häkkinen
Owner, Status changed
I'll add an ticket to the svndigest project and request that they …

Aug 30, 2007:

11:07 PM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) created by Nicklas Nordborg
I am not sure if the extra new line at the end of …
10:58 PM Ticket #736 (Incorrect error message is displayed if a file upload fails) created by Nicklas Nordborg
The JSP page that should take care of the error and display it has a …
3:59 PM Changeset [3706] by Martin Svensson
References #364 Started updating the GUI to support auto installation …
3:59 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3706]) References #364 Started updating the GUI to support auto …

Aug 29, 2007:

8:50 PM Changeset [3705] by Peter Johansson
refs #639
8:50 PM Ticket #639 (exportPureMatrix method) updated by Peter Johansson
(In [3705]) refs #639

Aug 28, 2007:

4:42 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3704]) References #364 Moved the PluginInfo class to another …
4:42 PM Changeset [3704] by Martin Svensson
References #364 Moved the PluginInfo class to another package, added a …
4:21 PM Ticket #735 (PermissionDeniedException on array design list view) updated by base
yes that fixed it (sharing the cdf file to Everyone).
4:20 PM Ticket #735 (PermissionDeniedException on array design list view) created by base
As a normal user, another blank list view with the following in …
3:37 PM Ticket #734 (Un-caught NullPointerException in plugin configurations list view.) created by base
As an admin user I can create and view plugin configurations fine. As …
3:29 PM Ticket #733 (Add support to select plugin configurations that should be imported) updated by Martin Svensson
Description changed

Aug 27, 2007:

12:56 PM Ticket #733 (Add support to select plugin configurations that should be imported) updated by Martin Svensson
Status, Description, Milestone changed
12:53 PM Ticket #733 (Add support to select plugin configurations that should be imported) created by Martin Svensson
The plugin-configuration-importer plugin should offer a possibility …
10:03 AM Changeset [3703] by Martin Svensson
Fixes the problem with '+' before the exponent (when its 0). The '+' …

Aug 24, 2007:

3:39 PM Ticket #706 (Averagemethod on raw data types) updated by Jari Häkkinen
Summary changed
3:39 PM Ticket #667 (Move ch. 7 to a lower level) updated by Jari Häkkinen
Status, Owner changed
3:38 PM Ticket #593 (Write "Appendix: Core plug-ins shipped with BASE") updated by Jari Häkkinen
Owner, Status changed
3:37 PM Ticket #732 (Link to basehacks has disappeard) updated by Jari Häkkinen
(In [3702]) Addresses #732. Fixing broken basehacks link.
3:37 PM Changeset [3702] by Jari Häkkinen
Addresses #732. Fixing broken basehacks link.
3:36 PM Changeset [3701] by Jari Häkkinen
Addresses #732. Fixing broken basehacks link.
3:36 PM Ticket #732 (Link to basehacks has disappeard) updated by Jari Häkkinen
(In [3701]) Addresses #732. Fixing broken basehacks link.
1:53 PM Ticket #732 (Link to basehacks has disappeard) created by Jari Häkkinen
We need to keep a link to http://trac.thep.lu.se/trac/basehacks
10:44 AM Ticket #731 (Extend mapping in Base1PluginExecuter) created by Johan Enell
The mapping in the executer should be extended. For instance …

Aug 23, 2007:

1:42 PM Changeset [3700] by Martin Svensson
References #364 The main functions in core is now done for this. A …
1:42 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3700]) References #364 The main functions in core is now done for …

Aug 22, 2007:

12:42 PM Changeset [3699] by Jari Häkkinen
URL to demo server change
11:11 AM WikiStart edited by Jari Häkkinen
URL to demo server change (diff)

Aug 21, 2007:

4:17 PM Changeset [3698] by Martin Svensson
References #364 Automatic install non-core plugins. First check-in, …
4:17 PM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
(In [3698]) References #364 Automatic install non-core plugins. First …
3:59 PM Changeset [3697] by Jari Häkkinen
Removed 'reference reference' repeat.
3:14 PM Ticket #730 (Documentation figures should be centered by default) created by Jari Häkkinen
It would also be nice to be able to have figures with text next to it …
2:08 PM Changeset [3696] by Jari Häkkinen
Removing obsolete branch. Superseeded by …
11:58 AM Changeset [3695] by Jari Häkkinen
Merged log:trunk#3650:3691 into the webservices branch.

Aug 20, 2007:

4:14 PM WikiStart edited by Jari Häkkinen
Added feature list. (diff)
4:02 PM Milestone BASE 2.4 completed
The aim is to fix various outstanding issues. Major features such as …
4:02 PM Ticket #729 (./jobagent.sh should accept command `status`) created by Jari Häkkinen
status should return if the agent is running or not. Needed for …
3:59 PM Ticket #728 (./jobagent.sh start does not work) created by Jari Häkkinen
The response is: […] Issuing `./jobagent.sh -c …
3:55 PM Ticket #659 (Add wiki page describing BASE features) closed by Jari Häkkinen
fixed: First version added as http://base.thep.lu.se/wiki/Features
3:32 PM Features edited by Jari Häkkinen
More features. (diff)
3:28 PM Features created by Jari Häkkinen
First list of features.
3:22 PM ReleaseProcedure edited by Jari Häkkinen
More fixes to the release procedures. (diff)
2:58 PM ReleaseProcedure edited by Jari Häkkinen
Added link to announcement mail (diff)
2:51 PM DownloadPage edited by Jari Häkkinen
(diff)
2:49 PM ReleaseProcedure edited by Jari Häkkinen
(diff)
2:49 PM DownloadPage edited by Jari Häkkinen
Releasing 2.4 (diff)
2:22 PM Changeset [3694] by Jari Häkkinen
Changes for future release 2.4.1
2:18 PM ReleaseProcedure edited by Jari Häkkinen
(diff)
2:04 PM Changeset [3693] by Jari Häkkinen
Tagging version 2.4
1:56 PM Changeset [3692] by Jari Häkkinen
Preparing release 2.4
1:50 PM Changeset [3691] by Jari Häkkinen
Changes for future release 2.5
1:49 PM Changeset [3690] by Jari Häkkinen
Forking new minor version 2.4 branch.
1:42 PM ReleaseProcedure edited by Jari Häkkinen
Improving procedure. (diff)
12:04 PM Changeset [3689] by Jari Häkkinen
Fixes #615.
12:04 PM Ticket #615 (Write 'Installing job agents' section) closed by Jari Häkkinen
fixed: (In [3689]) Fixes #615.
12:03 PM Changeset [3688] by Jari Häkkinen
Updated link to release procedures.
12:02 PM Changeset [3687] by Jari Häkkinen
Removed links to deleted files.
9:34 AM Changeset [3686] by Jari Häkkinen
Refs #615 and fixed spelling.
9:34 AM Ticket #615 (Write 'Installing job agents' section) updated by Jari Häkkinen
(In [3686]) Refs #615 and fixed spelling.
9:33 AM Changeset [3685] by Jari Häkkinen
Removed obsolete files.

Aug 17, 2007:

4:56 PM Ticket #664 (Remove chapter 6.1.3) closed by Jari Häkkinen
fixed: (In [3684]) Fixes #664
4:56 PM Changeset [3684] by Jari Häkkinen
Fixes #664
4:28 PM Changeset [3683] by Jari Häkkinen
Spelling.
3:45 PM Changeset [3682] by Jari Häkkinen
Added Peter Johansson.
1:59 PM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
Description changed
1:56 PM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
(In [3681]) References #721: Store data in files instead of in the …
1:56 PM Changeset [3681] by Nicklas Nordborg
References #721: Store data in files instead of in the database First …
1:20 PM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
Description changed
1:00 PM Ticket #653 (Implement DbControl.flush() method) updated by Nicklas Nordborg
Milestone changed
1:00 PM Ticket #185 (Refactor the Item class and DbControl and more...) updated by Nicklas Nordborg
Milestone changed
12:04 PM Ticket #727 (Add presentations and publications to the wiki) created by Jari Häkkinen
11:43 AM Ticket #726 (Add nice screen shots to the documentation section in the wiki.) created by Jari Häkkinen
This is for the marketing department.
11:26 AM Changeset [3680] by Nicklas Nordborg
Removed explicit call to System.gc(). Better command line parameters …
11:26 AM Ticket #364 (Support for automatic install of non-core plugins) updated by Martin Svensson
Owner, Status changed
11:09 AM Ticket #725 (Transfer all old documentation to the new wiki system.) updated by Jari Häkkinen
Status changed
11:09 AM Ticket #725 (Transfer all old documentation to the new wiki system.) created by Jari Häkkinen
11:04 AM Ticket #695 (implement run method in AbstractPlugin??) closed by Jari Häkkinen
wontfix
11:02 AM Ticket #689 (Increase 99 hits per page limit (list views)) updated by Jari Häkkinen
Milestone changed
11:00 AM Ticket #683 (Holding down SHIFT, CTRL or ALT when creating a new item should ...) updated by Jari Häkkinen
Milestone changed
10:59 AM Ticket #668 (Displaying icons in the text) updated by Jari Häkkinen
Milestone changed
10:58 AM Ticket #667 (Move ch. 7 to a lower level) updated by Jari Häkkinen
Milestone changed
10:58 AM Ticket #666 (Image in chapter 6.2.3) updated by Jari Häkkinen
Milestone changed
10:57 AM Ticket #665 (Links in the documentation) updated by Jari Häkkinen
Milestone changed
10:57 AM Ticket #664 (Remove chapter 6.1.3) updated by Jari Häkkinen
Status, Milestone, Owner changed
10:56 AM Ticket #664 (Remove chapter 6.1.3) updated by Jari Häkkinen
Milestone changed
10:55 AM Ticket #585 (Make the BASE file system pluggable) updated by Jari Häkkinen
Milestone changed
10:53 AM Ticket #560 (Deleting reporters) updated by Jari Häkkinen
Milestone changed
10:52 AM Ticket #608 (Delete 'removed' items directly from list views) updated by Jari Häkkinen
Milestone changed
10:51 AM Ticket #608 (Delete 'removed' items directly from list views) updated by Jari Häkkinen
Milestone changed
10:50 AM Ticket #425 (Store the character encoding for text files) updated by Jari Häkkinen
Milestone changed
10:48 AM Ticket #376 (Better system for checking which plugins that can be executed in a ...) updated by Jari Häkkinen
Milestone changed
10:37 AM Ticket #706 (Averagemethod on raw data types) updated by Jari Häkkinen
Owner changed
10:35 AM Ticket #636 (Kill a running job) updated by Jari Häkkinen
Milestone, Summary changed
10:30 AM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) updated by Jari Häkkinen
Priority changed
10:20 AM Ticket #450 (Plugin for importing Imagene raw data) updated by Jari Häkkinen
Description changed
Send a request to the mailing lists asking for test data. If no one is …
10:04 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by Jari Häkkinen
Milestone changed
9:18 AM Changeset [3679] by Jari Häkkinen
Changing the pesky "a (ä) character to a.
9:12 AM ReleaseProcedure edited by Jari Häkkinen
Added a warning about breaking UTF-8 character encoding. (diff)
8:29 AM Changeset [3678] by Nicklas Nordborg
Require DTD files to be encoded in ISO-8859-1

Aug 16, 2007:

8:13 PM Changeset [3677] by Jari Häkkinen
Added copyright statement.
6:36 PM Changeset [3676] by Jari Häkkinen
Trying to fix illegal character problem.
4:47 PM WikiStart edited by Jari Häkkinen
Added link to svndigest output. (diff)
4:16 PM Changeset [3675] by Jari Häkkinen
Fixing copyright statements. Fixing svn properties.
2:52 PM ReleaseProcedure edited by Jari Häkkinen
(diff)
2:45 PM ReleaseProcedure edited by Jari Häkkinen
Packages moved to http://base2.thep.lu.se (diff)
2:42 PM Ticket #721 (Store data in files instead of in the database) updated by Nicklas Nordborg
Owner, Status changed
2:40 PM DownloadPage edited by Jari Häkkinen
Moved all downloadable packages to http://base2.thep.lu.se (diff)
11:43 AM Changeset [3674] by Jari Häkkinen
Added Dominic to .svndigest config.
11:27 AM Changeset [3673] by Jari Häkkinen
Updated .svndigest config.
11:21 AM ReleaseProcedure edited by Jari Häkkinen
svndigest information related fixes. (diff)
11:01 AM Changeset [3672] by Jari Häkkinen
Removed obsolete links and information.
10:07 AM Ticket #656 (Update release procedure) closed by Jari Häkkinen
fixed: (In [3671]) Fixes #656. New release procedures are added to …
10:07 AM Changeset [3671] by Jari Häkkinen
Fixes #656. New release procedures are added to wiki:ReleaseProcedure.
10:04 AM ReleaseProcedure edited by Jari Häkkinen
Working on ticket:656. This is the last draft before actually trying … (diff)
9:33 AM ReleaseProcedure edited by Jari Häkkinen
Working on ticket:656 (diff)
9:30 AM DownloadPage edited by Jari Häkkinen
Typo, changed svndigest to base. (diff)
9:21 AM ReleaseProcedure edited by Jari Häkkinen
Working on ticket:656 (diff)
9:02 AM DownloadPage edited by Jari Häkkinen
Restructurred the download page. (diff)

Aug 15, 2007:

12:37 PM ReleaseProcedure edited by Jari Häkkinen
Working on the release procedure. Refs ticket:656 (diff)
12:02 PM Changeset [3670] by Nicklas Nordborg
Included numbers with scientific notation in the test.
11:50 AM Changeset [3669] by Jari Häkkinen
Removing obsolete file.
11:01 AM Ticket #724 (Nullpointer exception when 'overwrite' is not set in export-plugin ...) closed by Martin Svensson
fixed: (In [3668]) Fixes #724 Nullpointer exception when 'overwrite' is not …
11:01 AM Changeset [3668] by Martin Svensson
Fixes #724 Nullpointer exception when 'overwrite' is not set in …
10:57 AM Changeset [3667] by Nicklas Nordborg
Display free memory before AND after System.gc().
10:52 AM ReleaseProcedure created by Jari Häkkinen
Creating release procedure page. This version is stolen from …
10:51 AM DeveloperInformation edited by Jari Häkkinen
Adding release procedures, refs ticket:656 (diff)
9:46 AM Ticket #337 (Tab2Mage export plugin) closed by Jari Häkkinen
fixed: This plugin is developed and distributed through …
9:43 AM Ticket #338 (Tab2Mage import plugin) closed by Jari Häkkinen
fixed: This plugin is developed and distributed through …
9:33 AM Ticket #724 (Nullpointer exception when 'overwrite' is not set in export-plugin ...) updated by Martin Svensson
Status changed
9:31 AM Ticket #724 (Nullpointer exception when 'overwrite' is not set in export-plugin ...) created by Martin Svensson
This appear in the configuration process when no value has been …

Aug 14, 2007:

7:46 PM Ticket #469 (Improve error handling of invalid values in import plugins) updated by Nicklas Nordborg
(In [3666]) References #469: Added negative numbers to test case with …
7:46 PM Changeset [3666] by Nicklas Nordborg
References #469: Added negative numbers to test case with dirty data
4:55 PM WikiStart edited by Jari Häkkinen
Fixed sponsor links and images. (diff)
4:05 PM Ticket #723 (Update list with core plugins) closed by Martin Svensson
duplicate: This will be done when the core-plugin page is re-written into current …
2:53 PM Ticket #514 (Change permissions in Power User) closed by Martin Svensson
fixed: (In [3665]) Fixes #514 Change permissions in Power User
2:53 PM Changeset [3665] by Martin Svensson
Fixes #514 Change permissions in Power User
2:50 PM Changeset [3664] by Nicklas Nordborg
Fixes #722: Create DynamicReporterQuery
2:50 PM Ticket #722 (Create DynamicReporterQuery) closed by Nicklas Nordborg
fixed: (In [3664]) Fixes #722: Create DynamicReporterQuery
2:05 PM Ticket #723 (Update list with core plugins) created by Martin Svensson
The list with core plugins needs to be updated with configurations to …
12:47 PM Ticket #722 (Create DynamicReporterQuery) updated by Nicklas Nordborg
Owner, Status changed
12:47 PM Ticket #722 (Create DynamicReporterQuery) created by Nicklas Nordborg
This will allow programs to load exactly the needed reporter …
12:01 PM Ticket #514 (Change permissions in Power User) updated by Martin Svensson
Status changed
11:23 AM Ticket #514 (Change permissions in Power User) updated by Jari Häkkinen
Priority, Owner, Status, Type changed
After deep consideration we have decided to remove the create and …
9:25 AM Ticket #364 (Support for automatic install of non-core plugins) updated by Nicklas Nordborg
Milestone changed
9:21 AM Ticket #721 (Store data in files instead of in the database) created by Nicklas Nordborg
As I see it there are four basic problems: 1. Make it possible to …
9:09 AM Changeset [3663] by Nicklas Nordborg
Measure performance for reporter migration.
8:54 AM Changeset [3662] by Martin Svensson
Fixes #551 Read "Plugin developer" section
8:54 AM Ticket #551 (Read "Plugin developer" section) closed by Martin Svensson
fixed: (In [3662]) Fixes #551 Read "Plugin developer" section
8:16 AM Ticket #720 (Progress reporter when emptying trashcan) updated by Nicklas Nordborg
(In [3661]) References #720: Progress reporter when emptying trashcan …
8:15 AM Changeset [3661] by Nicklas Nordborg
References #720: Progress reporter when emptying trashcan Progress …

Aug 13, 2007:

1:25 PM Ticket #294 (Performance testing: Plugin-in execution time) updated by Nicklas Nordborg
Owner, Status changed
1:09 PM Ticket #595 (Read "Appendix: extended-properties.xml reference") closed by Martin Svensson
fixed: (In [3660]) Fixes #595 Read "Appendix: extended-properties.xml reference"
1:09 PM Changeset [3660] by Martin Svensson
Fixes #595 Read "Appendix: extended-properties.xml reference"
12:57 PM Ticket #294 (Performance testing: Plugin-in execution time) updated by Nicklas Nordborg
Milestone changed
12:55 PM Ticket #294 (Performance testing: Plugin-in execution time) updated by Nicklas Nordborg
(In [3659]) References #294: Performance testing Added framework for …
12:55 PM Changeset [3659] by Nicklas Nordborg
References #294: Performance testing Added framework for testing BASE …
12:51 PM Ticket #595 (Read "Appendix: extended-properties.xml reference") updated by Martin Svensson
Status, Owner changed
11:44 AM Changeset [3658] by Nicklas Nordborg
Show stacktrace when a plug-in reports an error
11:26 AM Changeset [3657] by Nicklas Nordborg
Migrate reporters first.
10:57 AM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) closed by Jari Häkkinen
wontfix
10:49 AM Ticket #523 (Write "Overview of BASE" section in Overview part) updated by Jari Häkkinen
Milestone changed
10:49 AM Ticket #522 (Write "Why use BASE" section) updated by Jari Häkkinen
Milestone changed
10:48 AM Ticket #445 (Plug-in writers should check that the plug-in has the proper ...) closed by Jari Häkkinen
wontfix: Plug-ins should check that it has proper credential before it starts …
8:03 AM Ticket #719 (Add support for JEP if() function) closed by Nicklas Nordborg
fixed: (In [3656]) Fixes #719: Add support for JEP if() function
8:03 AM Changeset [3656] by Nicklas Nordborg
Fixes #719: Add support for JEP if() function

Aug 10, 2007:

2:50 PM Ticket #719 (Add support for JEP if() function) updated by Nicklas Nordborg
Status, Owner changed
2:22 PM Ticket #720 (Progress reporter when emptying trashcan) closed by Nicklas Nordborg
fixed: (In [3655]) Fixes #720: Progress reporter when emptying trashcan
2:22 PM Changeset [3655] by Nicklas Nordborg
Fixes #720: Progress reporter when emptying trashcan
1:26 PM Changeset [3654] by Jari Häkkinen
Copying another missing file from trunk.
12:59 PM Changeset [3653] by Jari Häkkinen
Merged log:trunk#3581:3649 into the wwebservices branch.
12:53 PM Changeset [3652] by Jari Häkkinen
Adding missing files. These files exist in trunk but was not included …
12:17 PM Changeset [3651] by Jari Häkkinen
Fixed svn properties issues.
11:46 AM Changeset [3650] by Nicklas Nordborg
Fixed performance problem with reporter migration. Added support for …
9:10 AM Changeset [3649] by Nicklas Nordborg
Make sure list of formulas get loaded to avoid …
8:48 AM Ticket #720 (Progress reporter when emptying trashcan) updated by Nicklas Nordborg
Status, Owner changed
8:48 AM Ticket #720 (Progress reporter when emptying trashcan) created by Nicklas Nordborg
Emptying the trashcan can take a very long time. Right now it is hard …

Aug 9, 2007:

4:31 PM Ticket #639 (exportPureMatrix method) updated by Peter Johansson
Milestone changed
The interface of this method is not mature enough to be included in …
4:28 PM Ticket #639 (exportPureMatrix method) updated by Peter Johansson
(In [3648]) refs #639 removing the exportPlainMatrix method.
4:28 PM Changeset [3648] by Peter Johansson
refs #639 removing the exportPlainMatrix method.
3:03 PM Ticket #719 (Add support for JEP if() function) created by Nicklas Nordborg
JEP supports an if() function with the following syntax: …
11:11 AM Changeset [3647] by Nicklas Nordborg
Fixes #718: BioAssaySet tries to calculate number of spots and …
11:11 AM Ticket #718 (BioAssaySet tries to calculate number of spots and reporter on ...) closed by Nicklas Nordborg
fixed: (In [3647]) Fixes #718: BioAssaySet tries to calculate number of spots …
9:47 AM Ticket #718 (BioAssaySet tries to calculate number of spots and reporter on ...) updated by Nicklas Nordborg
Status, Owner changed
9:46 AM Ticket #451 (Zipped download) updated by Nicklas Nordborg
(In [3646]) References #451: Zipped download Fixed test program and …
9:46 AM Changeset [3646] by Nicklas Nordborg
References #451: Zipped download Fixed test program and added it to …

Aug 8, 2007:

7:43 PM Ticket #718 (BioAssaySet tries to calculate number of spots and reporter on ...) created by Nicklas Nordborg
Stop with the following stack trace: […] The …
7:28 PM Ticket #639 (exportPureMatrix method) updated by Peter Johansson
(In [3645]) refs #639 stupid version of exportPureMatrix method that …
7:28 PM Changeset [3645] by Peter Johansson
refs #639 stupid version of exportPureMatrix method that simply …
2:52 PM Ticket #294 (Performance testing: Plugin-in execution time) updated by Nicklas Nordborg
Status, Owner changed
I will start to create a BASE 2 test framework that can be used to: …
2:45 PM Ticket #716 (Plugin configuration import should be able ot set the permission on ...) closed by Nicklas Nordborg
fixed: (In [3644]) Fixes #716: Plugin configuration import should be able ot …
2:45 PM Changeset [3644] by Nicklas Nordborg
Fixes #716: Plugin configuration import should be able ot set the …
2:32 PM Changeset [3643] by Nicklas Nordborg
Fixes #451: Zipped download Added user and plug-in developer documentation
2:32 PM Ticket #451 (Zipped download) closed by Nicklas Nordborg
fixed: (In [3643]) Fixes #451: Zipped download Added user and plug-in …
1:42 PM Changeset [3642] by Nicklas Nordborg
Fixes #715: Install should set same permission on plugin …
1:42 PM Ticket #715 (Install should set same permission on plugin configurations as on the ...) closed by Nicklas Nordborg
fixed: (In [3642]) Fixes #715: Install should set same permission on plugin …
1:38 PM Ticket #717 (Make initdb, updatedb and other scripts accept a username) created by Nicklas Nordborg
The current implementation forces the root user account to be named …
1:32 PM Ticket #451 (Zipped download) updated by Nicklas Nordborg
(In [3641]) References #451: Zipped download Major redesign of the …
1:32 PM Changeset [3641] by Nicklas Nordborg
References #451: Zipped download Major redesign of the packing …
12:59 PM Ticket #716 (Plugin configuration import should be able ot set the permission on ...) created by Nicklas Nordborg
This should probably be an option in the wizard. See also ticket #715.
12:57 PM Ticket #715 (Install should set same permission on plugin configurations as on the ...) created by Nicklas Nordborg

Aug 7, 2007:

5:20 PM Changeset [3640] by Johan Enell
a plugin can have no parameters
3:44 PM Ticket #714 (Base1PluginExecutor.JobParameter.toString() may generate incorrect XML) closed by Johan Enell
fixed: (In [3639]) Fixes #714
3:44 PM Changeset [3639] by Johan Enell
Fixes #714
1:40 PM Ticket #714 (Base1PluginExecutor.JobParameter.toString() may generate incorrect XML) updated by Johan Enell
Milestone, Status, Owner changed
12:49 PM Ticket #451 (Zipped download) updated by Nicklas Nordborg
Status changed
12:49 PM Ticket #451 (Zipped download) updated by Nicklas Nordborg
Owner, Status changed
12:09 PM Ticket #625 (Improve error/warning message display when selecting plug-ins) closed by Nicklas Nordborg
fixed
12:08 PM Ticket #698 (Fix Javadoc warnings) closed by Nicklas Nordborg
fixed
12:07 PM Ticket #663 (TOC is to big) closed by Nicklas Nordborg
wontfix
12:06 PM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) closed by Nicklas Nordborg
wontfix
11:35 AM Ticket #714 (Base1PluginExecutor.JobParameter.toString() may generate incorrect XML) created by Nicklas Nordborg
The Base1PluginExecutor.JobParameter.toString() method is used to …
11:30 AM Ticket #713 (Differences in the configuration file from base1) closed by Nicklas Nordborg
fixed: (In [3638]) Fixes #713: Differences in the configuration file from base1
11:30 AM Changeset [3638] by Nicklas Nordborg
Fixes #713: Differences in the configuration file from base1
11:17 AM Ticket #710 (Allow subclasses to AbstractFlatFileParser to participate in ...) closed by Nicklas Nordborg
fixed: (In [3637]) Fixes #710: Allow subclasses to AbstractFlatFileParser to …
11:17 AM Changeset [3637] by Nicklas Nordborg
Fixes #710: Allow subclasses to AbstractFlatFileParser to participate …
11:13 AM Ticket #486 (Import raw data from the Illumina platform) updated by Nicklas Nordborg
(In [3636]) References #486: Added Jeremy Davis-Turak to credits.txt …
11:13 AM Changeset [3636] by Nicklas Nordborg
References #486: Added Jeremy Davis-Turak to credits.txt for helping …
8:10 AM Ticket #710 (Allow subclasses to AbstractFlatFileParser to participate in ...) updated by Nicklas Nordborg
Status, Milestone, Owner changed

Aug 6, 2007:

2:49 PM Changeset [3635] by Nicklas Nordborg
References #358: Better info from Migration tool Show log message …
2:49 PM Ticket #358 (Better info from Migration tool) updated by Nicklas Nordborg
(In [3635]) References #358: Better info from Migration tool Show log …
2:48 PM Ticket #573 (Trim whitespace when checking for unique values) closed by Nicklas Nordborg
fixed: (In [3634]) Fixes #573: Trim whitespace when checking for unique values
2:48 PM Changeset [3634] by Nicklas Nordborg
Fixes #573: Trim whitespace when checking for unique values
12:35 PM Ticket #573 (Trim whitespace when checking for unique values) reopened by Nicklas Nordborg
As it turns out, BASE 1 only removed trailing white spaces...not …
9:36 AM Ticket #574 (Handle database differences with case sensitivity) updated by Nicklas Nordborg
(In [3633]) References #574. Test program didn't report error properly
9:36 AM Changeset [3633] by Nicklas Nordborg
References #574. Test program didn't report error properly

Aug 3, 2007:

4:53 PM Ticket #713 (Differences in the configuration file from base1) reopened by Nicklas Nordborg
new Integer(options) exists in several other places in the …
4:10 PM Changeset [3632] by Johan Enell
Fixes #713
4:10 PM Ticket #713 (Differences in the configuration file from base1) closed by Johan Enell
fixed: (In [3632]) Fixes #713
4:02 PM Ticket #713 (Differences in the configuration file from base1) created by Johan Enell
The options value for the enumeration parameter can be empty. The …
3:09 PM Ticket #701 (JarClassLoader should be able to auto-reload based on timestamp) closed by Nicklas Nordborg
fixed: (In [3631]) Fixes #701: JarClassLoader should be able to auto-reload …
3:09 PM Changeset [3631] by Nicklas Nordborg
Fixes #701: JarClassLoader should be able to auto-reload based on timestamp
2:32 PM Ticket #701 (JarClassLoader should be able to auto-reload based on timestamp) updated by Nicklas Nordborg
Status, Milestone, Owner changed
2:10 PM illumina-raw-data.xml attached to Ticket #486 by Nicklas Nordborg
This replaces the older raw-data-types.xml. It incorrectly set one …
2:02 PM Changeset [3630] by Nicklas Nordborg
Fixes #704: Make sure DbControl is closed from www/common/import/index.jsp
2:02 PM Ticket #704 (Make sure DbControl is closed from www/common/import/index.jsp) closed by Nicklas Nordborg
fixed: (In [3630]) Fixes #704: Make sure DbControl is closed from …
1:58 PM Ticket #704 (Make sure DbControl is closed from www/common/import/index.jsp) updated by Nicklas Nordborg
Status, Owner changed
1:53 PM Tickets #711,​712 batch updated by Nicklas Nordborg
fixed: (In [3629]) Fixes #712, References #711
1:53 PM Changeset [3629] by Nicklas Nordborg
Fixes #712, References #711
1:51 PM Ticket #711 (Deleting a bioassayset doesn't decrease used quota as much as expected) updated by Nicklas Nordborg
The good news is that the problem with the experiment beeing updated …
1:48 PM Ticket #711 (Deleting a bioassayset doesn't decrease used quota as much as expected) closed by Nicklas Nordborg
duplicate: Duplicate of #712
1:47 PM Ticket #712 (DbControl.commit() may call onBeforeCommit() multiple times for the ...) created by Nicklas Nordborg
See ticket #711 for a symptom of this defect. The …
1:09 PM Ticket #711 (Deleting a bioassayset doesn't decrease used quota as much as expected) updated by Nicklas Nordborg
Owner, Priority, Status changed
I have made some initial checks and the problem seems to be unrelated …
12:07 PM Ticket #711 (Deleting a bioassayset doesn't decrease used quota as much as expected) created by Nicklas Nordborg
1. I started out with a new fresh experiment. It used 0 bytes. 2. A …
12:00 PM Changeset [3628] by Nicklas Nordborg
References #625: PrintMapFlatFileImporter.isInContext now checks if …
12:00 PM Ticket #625 (Improve error/warning message display when selecting plug-ins) updated by Nicklas Nordborg
(In [3628]) References #625: PrintMapFlatFileImporter.isInContext now …
11:49 AM Ticket #710 (Allow subclasses to AbstractFlatFileParser to participate in ...) created by Nicklas Nordborg
This is currently an affair for the AbstractFlatFileParser only. The …
11:39 AM Ticket #709 (Install should install missing plug-in configurations when updating) updated by Nicklas Nordborg
(In [3627]) References #709: Forgot to add predefined query
11:39 AM Changeset [3627] by Nicklas Nordborg
References #709: Forgot to add predefined query
11:38 AM Ticket #486 (Import raw data from the Illumina platform) closed by Nicklas Nordborg
fixed: (In [3626]) Fixes #486: Import raw data from the Illumina platform
11:38 AM Changeset [3626] by Nicklas Nordborg
Fixes #486: Import raw data from the Illumina platform
11:24 AM Changeset [3625] by Nicklas Nordborg
Fixes #709: Install should install missing plug-in configurations when …
11:24 AM Ticket #709 (Install should install missing plug-in configurations when updating) closed by Nicklas Nordborg
fixed: (In [3625]) Fixes #709: Install should install missing plug-in …
10:58 AM Ticket #709 (Install should install missing plug-in configurations when updating) updated by Nicklas Nordborg
Status changed
10:58 AM Ticket #709 (Install should install missing plug-in configurations when updating) created by Nicklas Nordborg
Currently, plug-in configurations are only installed if it is a new …
9:42 AM Changeset [3624] by Nicklas Nordborg
Fixes #708: "NaN" and "Infinity" values in files causes SqlException
9:42 AM Ticket #708 ("NaN" and "Infinity" values in files causes SqlException) closed by Nicklas Nordborg
fixed: (In [3624]) Fixes #708: "NaN" and "Infinity" values in files causes …
9:42 AM Ticket #708 ("NaN" and "Infinity" values in files causes SqlException) updated by Nicklas Nordborg
Summary changed
9:06 AM Ticket #708 ("NaN" and "Infinity" values in files causes SqlException) updated by Nicklas Nordborg
Status, Owner changed
9:06 AM Ticket #708 ("NaN" and "Infinity" values in files causes SqlException) updated by Nicklas Nordborg
Doing it at the batcher level turned out to a bad idea. The reason is …
8:42 AM Ticket #708 ("NaN" and "Infinity" values in files causes SqlException) created by Nicklas Nordborg
The string "NaN" when parsed by Java is seen as a valid numeric value …
7:44 AM Ticket #707 (Can't unlink items that have been put in the trashcan) updated by Nicklas Nordborg
Priority, Milestone, Description, Summary changed

Aug 2, 2007:

2:03 PM Ticket #707 (Can't unlink items that have been put in the trashcan) created by Nicklas Nordborg
Items that have been marked for removal can't be unlinked with other …
12:37 PM Ticket #706 (Averagemethod on raw data types) updated by Johan Enell
(In [3623]) References #706 Added average for genepix.flags
12:37 PM Changeset [3623] by Johan Enell
References #706 Added average for genepix.flags
12:36 PM Tickets #700,​590 batch updated by Johan Enell
fixed: (In [3622]) Fixes #700, #590
12:36 PM Changeset [3622] by Johan Enell
Fixes #700, #590
12:09 PM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) closed by Nicklas Nordborg
fixed: (In [3621]) Fixes #669
12:09 PM Changeset [3621] by Nicklas Nordborg
Fixes #669
11:59 AM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) reopened by Nicklas Nordborg
NullPointerException when creating a formula type that shouldn't have …
11:40 AM Ticket #706 (Averagemethod on raw data types) created by Johan Enell
Go through the raw-data-types.xml and add appropriate average method …
9:00 AM Ticket #486 (Import raw data from the Illumina platform) updated by Nicklas Nordborg
An example file from the Tab2Mage project …
8:41 AM Ticket #705 (Add preset to "Test with file" for regular expression that can split a ...) updated by Nicklas Nordborg
Description changed
8:40 AM Ticket #705 (Add preset to "Test with file" for regular expression that can split a ...) closed by Nicklas Nordborg
fixed: (In [3620]) Fixes #705: Add preset to "Test with file" for regular …
8:40 AM Changeset [3620] by Nicklas Nordborg
Fixes #705: Add preset to "Test with file" for regular expression that …
8:28 AM Ticket #705 (Add preset to "Test with file" for regular expression that can split a ...) updated by Nicklas Nordborg
Description changed
8:23 AM Ticket #705 (Add preset to "Test with file" for regular expression that can split a ...) updated by Nicklas Nordborg
Owner, Status changed
8:22 AM Ticket #705 (Add preset to "Test with file" for regular expression that can split a ...) created by Nicklas Nordborg
This regexp seems to work: […] Thanks to Raimond Brookman …

Aug 1, 2007:

2:13 PM Ticket #704 (Make sure DbControl is closed from www/common/import/index.jsp) updated by Nicklas Nordborg
Description changed
2:13 PM Ticket #704 (Make sure DbControl is closed from www/common/import/index.jsp) created by Nicklas Nordborg
The following stack trace appears in Tomcat log file: […]
1:36 PM Ticket #486 (Import raw data from the Illumina platform) updated by Nicklas Nordborg
Status changed
1:35 PM Changeset [3619] by Nicklas Nordborg
Include test for selecting a parameter expression in SQL: SELECT …
1:19 PM Ticket #702 (Add lineNum() function(s) to mapping expressions supported by the ...) closed by Nicklas Nordborg
fixed: (In [3618]) Fixes #702: Add lineNum() function(s) to mapping …
1:19 PM Changeset [3618] by Nicklas Nordborg
Fixes #702: Add lineNum() function(s) to mapping expressions supported …
12:06 PM Ticket #702 (Add lineNum() function(s) to mapping expressions supported by the ...) updated by Nicklas Nordborg
Owner, Status changed
12:05 PM Ticket #703 (Error message when loading invalid XML files doesn't include the file name) closed by Nicklas Nordborg
fixed: (In [3617]) Fixes #703: Error message when loading invalid XML files …
12:05 PM Changeset [3617] by Nicklas Nordborg
Fixes #703: Error message when loading invalid XML files doesn't …
11:00 AM Ticket #703 (Error message when loading invalid XML files doesn't include the file name) updated by Nicklas Nordborg
Status, Owner changed
10:40 AM Ticket #703 (Error message when loading invalid XML files doesn't include the file name) created by Nicklas Nordborg
For example: […]
10:06 AM Ticket #486 (Import raw data from the Illumina platform) updated by Nicklas Nordborg
From Jeremy Davis-Turak: Here is a brief summary of what the data …
10:02 AM Ticket #486 (Import raw data from the Illumina platform) updated by Nicklas Nordborg
Description changed
10:02 AM Ticket #702 (Add lineNum() function(s) to mapping expressions supported by the ...) created by Nicklas Nordborg
With this function we can import data and use the current line number …
9:53 AM Ticket #701 (JarClassLoader should be able to auto-reload based on timestamp) created by Nicklas Nordborg
This would simplify plug-in development since you would only have to …
8:49 AM Ticket #698 (Fix Javadoc warnings) updated by Nicklas Nordborg
(In [3616]) References #698: Fix Javadoc warnings Removed all …
8:49 AM Changeset [3616] by Nicklas Nordborg
References #698: Fix Javadoc warnings Removed all existing warnings. …
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