Timeline



Jun 1, 2007:

9:40 PM DownloadPage edited by Jari Häkkinen
(diff)
10:13 AM Ticket #610 (Offline files are counted in the total quota in disk usage overview) updated by Martin Svensson
Status, Owner changed
9:49 AM DownloadPage edited by Jari Häkkinen
2.3 released. (diff)
8:36 AM Ticket #613 (The web client never calls Plugin.done() when doing contexts check) updated by Nicklas Nordborg
Status, Owner changed
8:35 AM Changeset [3437] by Nicklas Nordborg
Fixes #614: Cannot edit a plug-in definition when the plug-in jar is …
8:35 AM Ticket #614 (Cannot edit a plug-in definition when the plug-in jar is missing) closed by Nicklas Nordborg
fixed: (In [3437]) Fixes #614: Cannot edit a plug-in definition when the …
8:25 AM Ticket #609 ('Delete', 'Restore' and 'Share' doesn't work when listing disk ...) updated by Martin Svensson
Status, Owner changed
8:19 AM Ticket #614 (Cannot edit a plug-in definition when the plug-in jar is missing) updated by Nicklas Nordborg
Component changed
8:19 AM Ticket #614 (Cannot edit a plug-in definition when the plug-in jar is missing) updated by Nicklas Nordborg
Status changed
8:15 AM Ticket #575 (Spot image generator creates file with invalid size in database) closed by Nicklas Nordborg
fixed: (In [3436]) Fixes #575: Spot image generator creates file with invalid …
8:15 AM Changeset [3436] by Nicklas Nordborg
Fixes #575: Spot image generator creates file with invalid size in database
8:04 AM Changeset [3435] by Nicklas Nordborg
Changed version number to 2.3.1pre
12:37 AM Changeset [3434] by Jari Häkkinen
Bumped version number.
12:35 AM Changeset [3433] by Jari Häkkinen
Merged log:trunk#3267:3432 into the webservices branch.
12:25 AM Changeset [3432] by Jari Häkkinen
Removed carriage return characters.

May 31, 2007:

4:08 PM Milestone BASE 2.3 completed
Documentation release.
4:07 PM Tickets #294,​516,​517,​524,​525,​526,​527,​532,​533,​534,​540,​542,​543,​545,​547,​548,​549,​551,​553,​555,​557,​558,​565,​568,​584,​589,​594,​595,​596,​598,​601,​333,​337,​479,​521,​535,​536,​537,​561,​567,​570,​579,​580,​591,​603,​620,​353,​358,​372,​411,​426,​435,​446,​469,​481,​492,​500,​515,​522,​523,​528,​546,​564,​566,​573,​574,​586,​602,​146,​326,​375,​470,​485,​503,​504,​518,​529,​538,​544,​560,​571,​577,​582,​583,​593,​597,​599,​600,​605,​611,​615,​23,​132,​133,​134,​136,​212,​252,​349,​480,​498,​550,​552,​554,​556,​572,​592,​607,​616,​619 batch updated by Jari Häkkinen
Milestone changed
Milestone BASE 2.4 deleted
4:05 PM Tickets #516,​517,​524,​525,​526,​527,​532,​533,​534,​540,​542,​543,​545,​547,​548,​549,​551,​553,​555,​557,​565,​584,​589,​594,​595,​596,​598,​601,​333,​521,​535,​536,​537,​570,​579,​580,​603,​500,​515,​522,​523,​528,​546,​586,​602,​146,​529,​538,​544,​593,​597,​599,​600,​605,​615,​23,​132,​133,​134,​136,​212,​349,​550,​552,​554,​592,​607,​619 batch updated by Jari Häkkinen
Milestone changed
Milestone BASE 2.3 deleted
3:54 PM Ticket #624 (Update copyright in 'About' button) created by Jari Häkkinen
3:18 PM Changeset [3431] by Jari Häkkinen
Bug fix branch for 2.3
3:17 PM Changeset [3430] by Jari Häkkinen
Tagging version 2.3
3:12 PM WikiStart edited by Jari Häkkinen
pdf name changed. (diff)
3:10 PM Changeset [3429] by Jari Häkkinen
Spell checked.
3:09 PM Changeset [3428] by Jari Häkkinen
Added short intro to overview.
2:59 PM Changeset [3427] by Jari Häkkinen
Updated current contributor list.
2:58 PM Changeset [3426] by Jari Häkkinen
Removed version number from pdf document.
2:40 PM Changeset [3425] by Nicklas Nordborg
Bumped version number to 2.3.0
2:32 PM WikiStart edited by Nicklas Nordborg
(diff)
2:26 PM DeveloperInformation edited by Nicklas Nordborg
(diff)
2:19 PM Changeset [3424] by Nicklas Nordborg
2:07 PM Ticket #623 (suggestions for time-saving improvements) closed by Nicklas Nordborg
wontfix: There was a (somtimes hectic) discussion about similar issues on the …
1:53 PM Changeset [3423] by Nicklas Nordborg
Fixed image scaling issues in the PDF version
12:42 PM Ticket #605 (Illegal characters in directoryname) closed by Johan Enell
fixed: (In [3417]) Fixes #619
12:38 PM Ticket #565 (Read "Array LIMS" section) closed by Martin Svensson
fixed: (In [3422]) Fixes #565 Read Array LIMS
12:37 PM Changeset [3422] by Martin Svensson
Fixes #565 Read Array LIMS
12:27 PM Changeset [3421] by Johan Enell
added positionBather
12:20 PM Ticket #623 (suggestions for time-saving improvements) created by base
We have used BASE for protein microarray data, and would find the …
11:55 AM Ticket #565 (Read "Array LIMS" section) updated by Martin Svensson
(In [3420]) References #565
11:55 AM Changeset [3420] by Martin Svensson
References #565
11:29 AM Ticket #602 (Migration of BASE 1 plug-in definitions is broken.) closed by Nicklas Nordborg
fixed: (In [3419]) Fixes #602: Migration of BASE 1 plug-in definitions is broken.
11:29 AM Changeset [3419] by Nicklas Nordborg
Fixes #602: Migration of BASE 1 plug-in definitions is broken.
11:26 AM Ticket #602 (Migration of BASE 1 plug-in definitions is broken.) updated by Nicklas Nordborg
Owner, Status, Milestone changed
11:24 AM Ticket #622 (After restarting a job that has crashed an 'Item already exists' error ...) created by base
Hi, I receive an 'Item already exists' error when restarting a failed …
11:20 AM Changeset [3418] by Nicklas Nordborg
API change in FlatFileParser
11:07 AM Changeset [3417] by Johan Enell
fixed _allIntensities fixed none 2channel import
10:48 AM Changeset [3416] by Johan Enell
changed the regexp order in hasMoreData()
9:33 AM Tickets #553,​552,​554 batch updated by Nicklas Nordborg
(In [3415]) References #552, #553, #554: More information about …
9:33 AM Changeset [3415] by Nicklas Nordborg
References #552, #553, #554: More information about backwards …
8:43 AM Ticket #621 (Write 'Plate' section) updated by Martin Svensson
Owner changed
8:43 AM Ticket #621 (Write 'Plate' section) created by Martin Svensson
http://base.thep.lu.se/chrome/site/doc/html/userdoc/array_lims/array_li

May 30, 2007:

11:46 PM Ticket #565 (Read "Array LIMS" section) updated by Martin Svensson
(In [3414]) References #565. Major organizations, will read it one …
11:46 PM Changeset [3414] by Martin Svensson
References #565. Major organizations, will read it one more time …
5:44 PM Changeset [3413] by Martin Svensson
Removed 'term' element inside 'listitem' - not supported in the …
5:35 PM Ticket #545 (Read "Biomaterials" section.) closed by Martin Svensson
fixed: (In [3412]) Fixes #545
5:35 PM Changeset [3412] by Martin Svensson
Fixes #545
4:41 PM Changeset [3411] by Jari Häkkinen
Fixes #601.
4:41 PM Ticket #601 (Read "Appendix: jobagent.sh reference") closed by Jari Häkkinen
fixed: (In [3411]) Fixes #601.
4:17 PM Changeset [3410] by Jari Häkkinen
Added @version and @since where appropriate, however src/test was excluded.
3:35 PM Changeset [3409] by Nicklas Nordborg
References #552, #553, #554: Added information about backwards …
3:35 PM Tickets #553,​552,​554 batch updated by Nicklas Nordborg
(In [3409]) References #552, #553, #554: Added information about …
2:27 PM Changeset [3408] by Johan Enell
will work with older versions of configuration
2:26 PM Changeset [3407] by Johan Enell
added null chack to improve error text
11:52 AM Changeset [3406] by Nicklas Nordborg
References #551. Added section about export plug-ins
11:52 AM Ticket #551 (Read "Plugin developer" section) updated by Nicklas Nordborg
(In [3406]) References #551. Added section about export plug-ins
8:03 AM Ticket #613 (The web client never calls Plugin.done() when doing contexts check) updated by Nicklas Nordborg
The Plugin.done() method is never called when doing an immediate …

May 29, 2007:

8:11 PM Ticket #544 (Write "Array LIMS" section.) closed by Nicklas Nordborg
duplicate: Duplicate of #565.
1:54 PM Changeset [3405] by Nicklas Nordborg
Fixed problems related to some of the images in the PDF version: …
1:27 PM Changeset [3404] by Nicklas Nordborg
References #534. Added missing screen shot.
1:27 PM Ticket #534 (Read "Annotations" section.) updated by Nicklas Nordborg
(In [3404]) References #534. Added missing screen shot.
1:26 PM Changeset [3403] by Nicklas Nordborg
Fixes #533.
1:26 PM Ticket #533 (Read "Reporters" section.) closed by Nicklas Nordborg
fixed: (In [3403]) Fixes #533.
11:52 AM Ticket #601 (Read "Appendix: jobagent.sh reference") updated by Jari Häkkinen
Owner, Status changed
11:23 AM Ticket #533 (Read "Reporters" section.) updated by Nicklas Nordborg
Description, Owner, Status changed
11:21 AM Changeset [3402] by Nicklas Nordborg
Fixed FAQ chapters.
8:47 AM Changeset [3401] by Nicklas Nordborg
Made <warnings> in help text stand out.
8:47 AM Ticket #534 (Read "Annotations" section.) closed by Nicklas Nordborg
fixed: (In [3400]) Fixes #534.
8:47 AM Changeset [3400] by Nicklas Nordborg
Fixes #534.

May 28, 2007:

5:18 PM Changeset [3399] by Martin Svensson
References #545 Reorganisation, more to come..
5:18 PM Ticket #545 (Read "Biomaterials" section.) updated by Martin Svensson
(In [3399]) References #545 Reorganisation, more to come..
5:04 PM Changeset [3398] by Jari Häkkinen
Fixes #527.
5:04 PM Ticket #527 (Read "Trashcan" section.) closed by Jari Häkkinen
fixed: (In [3398]) Fixes #527.
5:02 PM Tickets #534,​540,​542,​543 batch updated by Nicklas Nordborg
(In [3397]) References #534, #540, #542, #543: Removed unused screen shots.
5:02 PM Changeset [3397] by Nicklas Nordborg
References #534, #540, #542, #543: Removed unused screen shots.
3:34 PM Ticket #534 (Read "Annotations" section.) updated by Nicklas Nordborg
(In [3396]) References #534. Added section about annotating items.
3:34 PM Changeset [3396] by Nicklas Nordborg
References #534. Added section about annotating items.
2:22 PM Ticket #534 (Read "Annotations" section.) updated by Nicklas Nordborg
(In [3395]) References #534. Major reorganisation. Swapped screen shots.
2:22 PM Changeset [3395] by Nicklas Nordborg
References #534. Major reorganisation. Swapped screen shots.
1:23 PM Changeset [3394] by Martin Svensson
Replaced the most common guibutton:s with entities
1:19 PM Changeset [3393] by Nicklas Nordborg
Reverted back to newest versions of images overwritten by older …
11:37 AM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) updated by base
This also fixes a problem with B1PE and serial format export, so …
11:21 AM Changeset [3392] by Nicklas Nordborg
References #534 and #546. Moved info about Tab2Mage to Experiments and …
11:21 AM Tickets #534,​546 batch updated by Nicklas Nordborg
(In [3392]) References #534 and #546. Moved info about Tab2Mage to …
10:41 AM Changeset [3391] by philippe
10:41 AM Ticket #546 (Write "Experiments and analysis" section.) updated by Jari Häkkinen
Priority changed
9:33 AM Ticket #534 (Read "Annotations" section.) updated by Nicklas Nordborg
Owner, Description, Status changed
9:27 AM Ticket #527 (Read "Trashcan" section.) updated by Jari Häkkinen
Owner, Status changed
9:27 AM Changeset [3390] by Nicklas Nordborg
Fixes #543. Major reorganisation. Added screen shots.
9:27 AM Ticket #543 (Read "Software" section.) closed by Nicklas Nordborg
fixed: (In [3390]) Fixes #543. Major reorganisation. Added screen shots.
9:17 AM Ticket #543 (Read "Software" section.) updated by Nicklas Nordborg
Status, Owner, Description changed
9:15 AM Changeset [3389] by Nicklas Nordborg
References #546: Added missing screen shot.
9:15 AM Ticket #546 (Write "Experiments and analysis" section.) updated by Nicklas Nordborg
(In [3389]) References #546: Added missing screen shot.
9:13 AM Changeset [3388] by Nicklas Nordborg
Fixes #542. Major reorganisation. Added screen shots.
9:13 AM Ticket #542 (Read "Hardware" section.) closed by Nicklas Nordborg
fixed: (In [3388]) Fixes #542. Major reorganisation. Added screen shots.
8:54 AM Ticket #542 (Read "Hardware" section.) updated by Nicklas Nordborg
Owner, Status, Description changed
8:53 AM Ticket #540 (Read "Protocols" section) closed by Nicklas Nordborg
fixed: (In [3387]) Fixes #540. Major reorganisation. Added screen shots.
8:53 AM Changeset [3387] by Nicklas Nordborg
Fixes #540. Major reorganisation. Added screen shots.
7:51 AM Ticket #540 (Read "Protocols" section) updated by Nicklas Nordborg
Description changed
7:50 AM Ticket #540 (Read "Protocols" section) updated by Nicklas Nordborg
Status, Owner changed

May 25, 2007:

5:11 PM Changeset [3386] by Martin Svensson
Moved the FAQs to a part of it's own and changed to use right tags for FAQs
2:21 PM Ticket #551 (Read "Plugin developer" section) updated by Nicklas Nordborg
(In [3385]) References #551. Transferred section about authentication …
2:21 PM Changeset [3385] by Nicklas Nordborg
References #551. Transferred section about authentication plug-ins …
12:59 PM Changeset [3384] by Johan Enell
corrected some backward compability errors
12:17 PM Ticket #551 (Read "Plugin developer" section) updated by Nicklas Nordborg
(In [3383]) References #551. Added section about FileUnpacker plug-ins.
12:17 PM Changeset [3383] by Nicklas Nordborg
References #551. Added section about FileUnpacker plug-ins.
11:31 AM Ticket #620 (Add 'write protected' property to File) created by Nicklas Nordborg
This will prevent users from accidentally removing a file or moving it …
11:11 AM Changeset [3382] by Martin Svensson
Fixed the organization of the output-files
10:46 AM Ticket #545 (Read "Biomaterials" section.) updated by Martin Svensson
Description changed
10:45 AM Ticket #545 (Read "Biomaterials" section.) updated by Martin Svensson
Description, Status, Owner changed
9:45 AM Ticket #565 (Read "Array LIMS" section) updated by Martin Svensson
(In [3381]) References #565. Minor fixes - pictures remain to be …
9:45 AM Changeset [3381] by Martin Svensson
References #565. Minor fixes - pictures remain to be checked in before …
9:31 AM Changeset [3380] by Johan Enell
jobParameter specification added as an configuration parameter

May 24, 2007:

9:59 PM Changeset [3379] by Nicklas Nordborg
Fixed classpath problems with Windows
9:54 PM Changeset [3378] by Nicklas Nordborg
Render <command> tags in monospace font.
9:52 PM Changeset [3377] by Nicklas Nordborg
Fixed strange directory in Appendix->Menuguide
9:51 PM Ticket #601 (Read "Appendix: jobagent.sh reference") updated by Nicklas Nordborg
Summary, Priority changed
9:50 PM Changeset [3376] by Nicklas Nordborg
References #601
9:50 PM Ticket #601 (Read "Appendix: jobagent.sh reference") updated by Nicklas Nordborg
(In [3376]) References #601
8:59 PM Ticket #353 (Create connectivity from R/BioConductor to BASE) updated by Jari Häkkinen
Type changed
8:59 PM Ticket #353 (Create connectivity from R/BioConductor to BASE) updated by Jari Häkkinen
Initial R/BASE connectivity is implemented through web services. See …
8:51 PM Ticket #619 (property on src/core/net/sf/basedb/core/plugin/AbstractPlugin.java) closed by Jari Häkkinen
fixed: (In [3375]) Fixes #619
8:51 PM Changeset [3375] by Jari Häkkinen
Fixes #619
8:50 PM Changeset [3374] by Jari Häkkinen
Minor fix.
8:48 PM Ticket #619 (property on src/core/net/sf/basedb/core/plugin/AbstractPlugin.java) updated by Jari Häkkinen
Milestone, Status, Owner changed
I'll fix it but Peter you have the privileges to do it.
7:52 PM Ticket #619 (property on src/core/net/sf/basedb/core/plugin/AbstractPlugin.java) created by Peter Johansson
In file …
4:26 PM Changeset [3373] by Martin Svensson
Correct some small compiling errors
10:48 AM Ticket #565 (Read "Array LIMS" section) updated by Martin Svensson
Owner, Status changed
10:45 AM Changeset [3372] by philippe
9:33 AM Changeset [3371] by Martin Svensson
Removed empty lines in programlistings
8:39 AM Ticket #565 (Read "Array LIMS" section) updated by Jari Häkkinen
Summary changed
8:38 AM Ticket #545 (Read "Biomaterials" section.) updated by Jari Häkkinen
Priority changed
8:38 AM Ticket #545 (Read "Biomaterials" section.) updated by Jari Häkkinen
Summary, Priority changed
8:38 AM Ticket #565 (Read "Array LIMS" section) updated by Jari Häkkinen
Owner, Priority, Status, Summary changed
8:37 AM Ticket #618 (Write inherited annotations in biomaterials section) created by Jari Häkkinen
8:36 AM Ticket #617 (Write plate management in array LIMS) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/html/userdoc/array_lims/array_li
8:16 AM Ticket #543 (Read "Software" section.) updated by Jari Häkkinen
Status, Priority, Owner, Summary changed
8:16 AM Ticket #533 (Read "Reporters" section.) updated by Jari Häkkinen
Status, Priority, Owner, Summary changed
8:15 AM Ticket #540 (Read "Protocols" section) updated by Jari Häkkinen
Status, Priority, Owner, Summary changed
8:15 AM Ticket #542 (Read "Hardware" section.) updated by Jari Häkkinen
Priority changed
8:14 AM Ticket #542 (Read "Hardware" section.) updated by Jari Häkkinen
Status, Summary, Owner changed
8:14 AM Ticket #534 (Read "Annotations" section.) updated by Jari Häkkinen
Status, Owner changed
8:14 AM Ticket #534 (Read "Annotations" section.) updated by Jari Häkkinen
Priority, Summary changed

May 23, 2007:

7:41 PM Ticket #615 (Write 'Installing job agents' section) updated by Nicklas Nordborg
This document exists in the old format: …
7:31 PM Changeset [3370] by philippe
5:00 PM Changeset [3369] by Martin Svensson
Removed the empty row at the top in each programlisting
4:08 PM Ticket #616 (AnyToAny.exists()) created by Johan Enell
A method AnyToAny.exists() could be handy to have. Don't know what …
2:39 PM Changeset [3368] by Martin Svensson
Fixes #516 Read "Installation and upgrade" section.
2:39 PM Ticket #516 (Read "Installation and upgrade" section.) closed by Martin Svensson
fixed: (In [3368]) Fixes #516 Read "Installation and upgrade" section.
2:35 PM Ticket #615 (Write 'Installing job agents' section) created by Martin Svensson
http://base.thep.lu.se/chrome/site/doc/docbook/html/admindoc/installati
2:23 PM Changeset [3367] by Martin Svensson
Insert linebreak automatically in programlisting when line to long to …
2:02 PM Ticket #614 (Cannot edit a plug-in definition when the plug-in jar is missing) created by Jari Häkkinen
I changed my plug-in jar file name from oldname.jar to newname.jar. …
12:56 PM Ticket #551 (Read "Plugin developer" section) updated by Nicklas Nordborg
(In [3366]) References #551. Added section about core and web client …
12:56 PM Changeset [3366] by Nicklas Nordborg
References #551. Added section about core and web client interaction …
12:28 PM Ticket #613 (The web client never calls Plugin.done() when doing contexts check) created by Nicklas Nordborg
In /www/common/plugin/index.jsp there is code that checks if a plugin …
12:25 PM Ticket #612 (Add checks in the core so that unsaved objects are not used in queries.) created by Nicklas Nordborg
This will generate a Hibernate exception similar to: […] The …
11:14 AM Ticket #516 (Read "Installation and upgrade" section.) updated by Martin Svensson
Owner, Status changed
11:12 AM Changeset [3365] by Martin Svensson
Fixes #598 Read "Appendix: jobagent.properties reference"
11:12 AM Ticket #598 (Read "Appendix: jobagent.properties reference") closed by Martin Svensson
fixed: (In [3365]) Fixes #598 Read "Appendix: jobagent.properties reference"
9:53 AM Ticket #598 (Read "Appendix: jobagent.properties reference") updated by Martin Svensson
Status, Owner changed
9:53 AM Ticket #527 (Read "Trashcan" section.) updated by Martin Svensson
Status, Priority, Owner, Summary changed
9:52 AM Ticket #527 (Read "Trashcan" section.) updated by Martin Svensson
(In [3364]) References #527 Ready for reading
9:52 AM Changeset [3364] by Martin Svensson
References #527 Ready for reading

May 22, 2007:

10:49 PM Ticket #598 (Read "Appendix: jobagent.properties reference") updated by Nicklas Nordborg
Priority, Owner, Status, Summary changed
10:48 PM Ticket #598 (Read "Appendix: jobagent.properties reference") updated by Nicklas Nordborg
(In [3363]) References #598
10:48 PM Changeset [3363] by Nicklas Nordborg
References #598
9:39 PM Ticket #598 (Read "Appendix: jobagent.properties reference") updated by Nicklas Nordborg
Owner, Status changed
3:05 PM Ticket #611 (Improvements of Trashcan) created by Martin Svensson
Here follows a suggestion of trashcan improvements: * Change the …
12:11 PM Changeset [3362] by Nicklas Nordborg
References #546: Added some information about experiments
12:11 PM Ticket #546 (Write "Experiments and analysis" section.) updated by Nicklas Nordborg
(In [3362]) References #546: Added some information about experiments
9:57 AM Changeset [3361] by Jari Häkkinen
Changing <style> to <xslt> since ant docbook complains.
9:17 AM Changeset [3360] by Nicklas Nordborg
Added tip about decreasing fontsize when taking screenshots
9:02 AM Changeset [3359] by Nicklas Nordborg
Added text about View -> All items and fixed some cross references.
8:49 AM Changeset [3358] by Nicklas Nordborg
Fixed spelling and some cross references
8:28 AM Ticket #549 (Read "Administrate users/groups/roles" section.) closed by Nicklas Nordborg
fixed: (In [3357]) Fixes #549.
8:28 AM Changeset [3357] by Nicklas Nordborg
Fixes #549.
8:18 AM Ticket #610 (Offline files are counted in the total quota in disk usage overview) created by Nicklas Nordborg
1. Go to Administrate -> Disk usage 2. Select 'Per user' or 'Per …
8:06 AM Ticket #527 (Read "Trashcan" section.) updated by Martin Svensson
Description, Priority, Status, Owner changed
8:06 AM Ticket #609 ('Delete', 'Restore' and 'Share' doesn't work when listing disk ...) created by Nicklas Nordborg
1. Go to Administrate -> Disk usage 2. Select 'Per user' or 'Per …
7:59 AM Ticket #608 (Delete 'removed' items directly from list views) created by Nicklas Nordborg
As it is now, 'removed' items can only be deleted from the trashcan. …

May 21, 2007:

4:46 PM Changeset [3356] by Jari Häkkinen
svndigest should ignore these autogenerated files.
4:41 PM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
Priority changed
4:41 PM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
Description, Summary, Owner, Status changed
4:40 PM Changeset [3355] by Jari Häkkinen
Addresses #516. Migration instructions done.
4:40 PM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
(In [3355]) Addresses #516. Migration instructions done.
12:02 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Nicklas Nordborg
Owner, Status changed
11:51 AM Changeset [3354] by Nicklas Nordborg
Fixes #584
11:51 AM Ticket #584 (Read "Appendix. Menu guide") closed by Nicklas Nordborg
fixed: (In [3354]) Fixes #584
11:44 AM Ticket #584 (Read "Appendix. Menu guide") updated by Nicklas Nordborg
Status, Owner, Description changed
11:42 AM Changeset [3353] by Nicklas Nordborg
Removed scaling parameters from small image.
11:42 AM Ticket #555 (Read the short document on how to write the BASE document.) closed by Nicklas Nordborg
fixed: (In [3352]) Fixes #555
11:42 AM Changeset [3352] by Nicklas Nordborg
Fixes #555
10:00 AM Changeset [3351] by Martin Svensson
Fixes '[fop] SEVERE: Couldn't find hyphenation pattern en' when …
8:54 AM Ticket #555 (Read the short document on how to write the BASE document.) updated by Nicklas Nordborg
Status, Type, Owner, Description changed
8:41 AM Ticket #551 (Read "Plugin developer" section) updated by Martin Svensson
Description changed
8:41 AM Ticket #551 (Read "Plugin developer" section) updated by Martin Svensson
Description changed
7:58 AM Ticket #607 ('ant docbook' fails to generated helptexts for web client) closed by Nicklas Nordborg
worksforme: The failure happens when generating the help texts for the web client, …

May 19, 2007:

8:19 PM Ticket #607 ('ant docbook' fails to generated helptexts for web client) updated by Martin Svensson
Works for me on: Apache Ant version 1.6.5 compiled on January 14 …
9:56 AM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
(In [3350]) Addresses #516. Upgrade and installation done.
9:56 AM Changeset [3350] by Jari Häkkinen
Addresses #516. Upgrade and installation done.
9:50 AM Ticket #607 ('ant docbook' fails to generated helptexts for web client) created by Jari Häkkinen
html is generated properly but then the build script stops with the …

May 16, 2007:

4:50 PM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) updated by Johan Enell
Owner changed
4:50 PM Ticket #503 (Display more info about items in Experiment overview) updated by Johan Enell
Owner changed
4:49 PM Ticket #481 (Reporter importer plug-in should report how many reporters were ...) updated by Johan Enell
Component, Version changed
4:47 PM Ticket #606 (Base1PluginExecuter plugin directory) created by Johan Enell
When Base1PluginExecuter detects that the plugin directory doesn't …
4:39 PM Ticket #605 (Illegal characters in directoryname) created by Johan Enell
The method that suggests the plugin directory for the …
4:29 PM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) created by Johan Enell
The description of a Base1PluginExecuter configuration should be set …
2:57 PM Ticket #603 (Clean up the docbook directory) closed by Martin Svensson
fixed: (In [3349]) Fixes #603 Done some clean-up
2:57 PM Changeset [3349] by Martin Svensson
Fixes #603 Done some clean-up
2:36 PM Changeset [3348] by Nicklas Nordborg
Updated documentation about how to add screenshots
2:24 PM Ticket #603 (Clean up the docbook directory) updated by Martin Svensson
Status changed
2:24 PM Ticket #603 (Clean up the docbook directory) created by Martin Svensson
There are eg. some subdirectories that aren't need in BASE documentation.
2:19 PM Ticket #594 (Read "Appendix: base.config reference") closed by Martin Svensson
fixed: (In [3347]) Fixes #594 Read "Appendix:base.config ref"
2:19 PM Changeset [3347] by Martin Svensson
Fixes #594 Read "Appendix:base.config ref"
2:10 PM Changeset [3346] by Nicklas Nordborg
Updated docbook PDF generation to use FOP 0.93 instead of 0.20
1:18 PM Ticket #594 (Read "Appendix: base.config reference") updated by Martin Svensson
Status, Owner changed
1:17 PM Changeset [3345] by Martin Svensson
Fixes #548
1:17 PM Ticket #548 (Read "Installing plug-ins" section) closed by Martin Svensson
fixed: (In [3345]) Fixes #548
9:50 AM Changeset [3344] by Martin Svensson
Insert page number in pdf for all xref-elements
8:57 AM Ticket #557 (Read File management doc) closed by Nicklas Nordborg
fixed: (In [3343]) Fixes #557: Read File management doc
8:57 AM Changeset [3343] by Nicklas Nordborg
Fixes #557: Read File management doc
8:19 AM Changeset [3342] by Nicklas Nordborg
Turn off image scaling for HTML output.

May 15, 2007:

8:05 PM Ticket #602 (Migration of BASE 1 plug-in definitions is broken.) created by Nicklas Nordborg
See log output: […]
2:21 PM Ticket #548 (Read "Installing plug-ins" section) updated by Martin Svensson
Owner, Status changed
2:09 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
Owner, Priority, Summary, Status changed
2:08 PM Changeset [3341] by Martin Svensson
References #584 Ready to be read…
2:08 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
(In [3341]) References #584 Ready to be read…
1:28 PM Ticket #557 (Read File management doc) updated by Nicklas Nordborg
Description, Status, Owner changed
1:23 PM Ticket #594 (Read "Appendix: base.config reference") updated by Nicklas Nordborg
Summary, Priority changed
1:23 PM Changeset [3340] by Nicklas Nordborg
References #594: Write "Appendix: base.config reference" Now ready …
1:23 PM Ticket #594 (Read "Appendix: base.config reference") updated by Nicklas Nordborg
(In [3340]) References #594: Write "Appendix: base.config reference" …
1:22 PM Ticket #601 (Read "Appendix: jobagent.sh reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.j
1:21 PM Ticket #600 (Write "Appendix: Other configuration files") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/html/appendix/appendix.otherconf
1:21 PM Ticket #599 (Write "Appendix: migrate.properties reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/html/appendix/appendix.migrate.p
1:20 PM Ticket #598 (Read "Appendix: jobagent.properties reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.j
1:19 PM Ticket #597 (Read "Appendix: web.xml reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/html/appendix/appendix.web.xml.html
1:19 PM Ticket #596 (Read "Appendix: raw-data-types.xml reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/trunk/html/appendix/appendix.rawdata
1:18 PM Ticket #595 (Read "Appendix: extended-properties.xml reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.e
1:18 PM Ticket #594 (Read "Appendix: base.config reference") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.b
1:17 PM Ticket #593 (Write "Appendix: Core plug-ins shipped with BASE") created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/doc/docbook/html/appendix/appendix.c
1:14 PM Ticket #548 (Read "Installing plug-ins" section) updated by Nicklas Nordborg
Summary, Description, Status, Owner, Priority changed
1:13 PM Changeset [3339] by Nicklas Nordborg
References #548: Write "Installing plug-ins" section Now ready for …
1:13 PM Ticket #548 (Read "Installing plug-ins" section) updated by Nicklas Nordborg
(In [3339]) References #548: Write "Installing plug-ins" section Now …
11:45 AM Changeset [3338] by Nicklas Nordborg
Fixed incorrrect setting in default base.config
10:44 AM Changeset [3337] by Jari Häkkinen
Fixes #592.
10:44 AM Ticket #592 (broken anchors in documentation) closed by Jari Häkkinen
fixed: (In [3337]) Fixes #592.
10:44 AM Ticket #592 (broken anchors in documentation) updated by Jari Häkkinen
Owner, Status, Milestone changed
10:21 AM Ticket #592 (broken anchors in documentation) created by Peter Johansson
I found a couple of broekn anchors in the documentation, for example, …
7:56 AM Ticket #586 (BioAssaySetExporter is missing permissions on formulas) updated by Nicklas Nordborg
Milestone changed
7:56 AM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) updated by Nicklas Nordborg
Milestone changed

May 14, 2007:

4:32 PM Changeset [3336] by Johan Enell
Fixes #586
4:32 PM Ticket #586 (BioAssaySetExporter is missing permissions on formulas) closed by Johan Enell
fixed: (In [3336]) Fixes #586
4:18 PM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) closed by Johan Enell
fixed: (In [3335]) fixes #589
4:18 PM Changeset [3335] by Johan Enell
fixes #589
3:27 PM Ticket #435 (A check for reporter information is needed when adding/using ...) updated by Johan Enell
Owner changed
3:26 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Johan Enell
Owner changed
12:15 PM Changeset [3334] by Nicklas Nordborg
Addded some more appendixes to docbook
9:32 AM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) created by Nicklas Nordborg
Currently you have to choose if you want to use job agents or the …
9:14 AM Ticket #576 (plugin web interface can't find (recent) file items emptied from trashcan) updated by Nicklas Nordborg
Milestone changed
9:14 AM Ticket #581 (DataCube.countSpotMappings should use SelectedExpression for it's ...) updated by Nicklas Nordborg
Milestone changed
9:09 AM Ticket #558 (Update to Hibernate 3.2.4) updated by Nicklas Nordborg
Description changed
9:09 AM Ticket #558 (Update to Hibernate 3.2.4) updated by Nicklas Nordborg
Summary, Description changed
9:07 AM Ticket #575 (Spot image generator creates file with invalid size in database) updated by Nicklas Nordborg
Milestone changed
8:54 AM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) updated by Nicklas Nordborg
Description changed
8:44 AM Ticket #590 (Create test program for BioAsssaySetExporter) created by Nicklas Nordborg
Thers is no test program for the BioAssaySet exporter. I think it is …
8:37 AM Ticket #589 (BioAssaySetExporter tries to commit changes on a closed DbControl) created by Nicklas Nordborg
Trying to export a bioassayset in serial BASEfile format. After …
8:31 AM Ticket #588 (BioAssaySetExporter uses incorrect alias names in queries) created by Nicklas Nordborg
When a formula column has been selected for export the …
8:25 AM Ticket #586 (BioAssaySetExporter is missing permissions on formulas) updated by Nicklas Nordborg
Description changed
8:24 AM Ticket #587 (NullPointerException in BioAssaySetExporter if no reporter columns are ...) created by Nicklas Nordborg
When exporting a bioassay set in BASEfile format you will get a …
8:21 AM Ticket #586 (BioAssaySetExporter is missing permissions on formulas) created by Nicklas Nordborg
No formulas will show up in the 'Fields' parameter list when exporting …

May 11, 2007:

5:04 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
(In [3333]) References #584 Weekend check-in
5:04 PM Changeset [3333] by Martin Svensson
References #584 Weekend check-in
3:57 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
Status changed
3:50 PM Ticket #526 (Read "Projects and the permission system") closed by Martin Svensson
fixed: (In [3332]) Fixes #526 Read "Projects and the permission system"
3:50 PM Changeset [3332] by Martin Svensson
Fixes #526 Read "Projects and the permission system"
2:47 PM Ticket #585 (Make the BASE file system pluggable) created by Nicklas Nordborg
The BASE file system is already an abstract thing for client …
2:34 PM Ticket #548 (Read "Installing plug-ins" section) updated by Nicklas Nordborg
Status changed
2:34 PM Changeset [3331] by Nicklas Nordborg
References #535: Added style for <important> tags
2:34 PM Ticket #535 (Use docbook's stylesheet in BASE2's helptexts) updated by Nicklas Nordborg
(In [3331]) References #535: Added style for <important> tags
2:31 PM Changeset [3330] by Nicklas Nordborg
References #546: Added spot image screen shot
2:31 PM Ticket #546 (Write "Experiments and analysis" section.) updated by Nicklas Nordborg
(In [3330]) References #546: Added spot image screen shot
2:20 PM Ticket #548 (Read "Installing plug-ins" section) updated by Nicklas Nordborg
(In [3329]) References #548: Write "Installing plug-ins" section
2:20 PM Changeset [3329] by Nicklas Nordborg
References #548: Write "Installing plug-ins" section
1:45 PM Changeset [3328] by Martin Svensson
References #584
1:45 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
(In [3328]) References #584
1:44 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
(In [3327]) References #584
1:44 PM Changeset [3327] by Martin Svensson
References #584
1:40 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
Description changed
1:39 PM Ticket #584 (Read "Appendix. Menu guide") updated by Martin Svensson
Description changed
1:32 PM Ticket #584 (Read "Appendix. Menu guide") created by Martin Svensson
This appendix should be a reference for those who quickly wants to …
12:06 PM Ticket #526 (Read "Projects and the permission system") updated by Martin Svensson
Status, Owner changed
12:04 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
Priority, Summary, Owner, Status changed
12:04 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
(In [3326]) References #549. Moved the helptext-tags inside the …
12:04 PM Changeset [3326] by Martin Svensson
References #549. Moved the helptext-tags inside the sect3-tags to …
9:28 AM Ticket #364 (Support for automatic install of non-core plugins) updated by Nicklas Nordborg
Type changed
A first step in this direction would be to make it easier to register …
9:17 AM Changeset [3325] by Jari Häkkinen
FIxed typo.
9:06 AM Changeset [3324] by Jari Häkkinen
web.gif has disappeared, removed it from the doc.
8:46 AM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
Priority, Owner, Summary, Status changed
The helptexts in the chapter has to be re-organized.
8:35 AM Ticket #570 (Write "Configuring core plugins" section) closed by Nicklas Nordborg
duplicate: Part of #548: Write "Installing plug-ins" section
8:34 AM Ticket #548 (Read "Installing plug-ins" section) updated by Nicklas Nordborg
Summary, Owner, Priority, Status, Description changed
The current text was very developer-centric. Needs to be rewritten.
8:23 AM Ticket #535 (Use docbook's stylesheet in BASE2's helptexts) closed by Nicklas Nordborg
fixed: Well, it is fixed, but we add missing styles when we find out about them.
8:18 AM Ticket #583 (Allow changing the array design of a raw bioasay when it has raw data) created by Nicklas Nordborg
This is currently not allowed because of validation issues. The …
8:03 AM Ticket #548 (Read "Installing plug-ins" section) updated by Martin Svensson
Owner, Summary, Status changed

May 10, 2007:

11:08 PM Changeset [3323] by Nicklas Nordborg
Added missing parts of a paragraph.
10:58 PM Changeset [3322] by Jari Häkkinen
Addresses #516.
10:58 PM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
(In [3322]) Addresses #516.
3:44 PM Changeset [3321] by Martin Svensson
Made the pdf generation to only print warnings and errors in the terminal
2:22 PM Changeset [3320] by Martin Svensson
Fixes #525 Read "Using the web client"
2:22 PM Ticket #525 (Read "Using the web client") closed by Martin Svensson
fixed: (In [3320]) Fixes #525 Read "Using the web client"
1:43 PM Ticket #546 (Write "Experiments and analysis" section.) updated by Nicklas Nordborg
Owner, Status changed
Handing this over to someone else with more knowledge of such things.
1:40 PM Changeset [3319] by Nicklas Nordborg
Fixed problem with incorrect links to <sect2> sections.
1:40 PM Changeset [3318] by Nicklas Nordborg
Split 'Experiments and analysis' into several files. Wrote 'Scans and …

May 9, 2007:

4:11 PM Changeset [3317] by Martin Svensson
Made the guilabels and guibuttons bold in the pdf output
3:06 PM Changeset [3316] by Nicklas Nordborg
It is not easier to see error/warning in the output from the docbook.
2:35 PM Changeset [3315] by Nicklas Nordborg
Synchronized table of contents for developer documentation with the …
1:52 PM Ticket #547 (Read"Import and Export data") closed by Nicklas Nordborg
fixed: (In [3314]) Fixes #547: Read"Import and Export data"
1:52 PM Changeset [3314] by Nicklas Nordborg
Fixes #547: Read"Import and Export data"
1:32 PM Ticket #525 (Read "Using the web client") updated by Martin Svensson
Owner, Status changed
1:30 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
Priority, Status, Summary, Owner changed
Chapter ready to be read.
1:22 PM Changeset [3313] by Martin Svensson
Reference #549. First revision of the whole chapter
1:03 PM Changeset [3312] by Nicklas Nordborg
Added column to help list that displays help as html.
12:43 PM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
(In [3311]) Addresses #516.
12:43 PM Changeset [3311] by Jari Häkkinen
Addresses #516.
9:18 AM Changeset [3310] by Martin Svensson
References #549. More text, mainly about quota
9:18 AM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
(In [3310]) References #549. More text, mainly about quota

May 8, 2007:

5:11 PM Changeset [3309] by Jari Häkkinen
config syntax changed
3:37 PM Ticket #547 (Read"Import and Export data") updated by Nicklas Nordborg
Owner, Status, Description changed
2:34 PM Changeset [3308] by Nicklas Nordborg
Wrote "Experiment overview" section in the "Experiment and analysis" …
2:30 PM Changeset [3307] by Nicklas Nordborg
Fixed output of <nohelp> tagged parts in HTML and PDF versions.
2:22 PM Changeset [3306] by Nicklas Nordborg
Allow parts of texts inside <helptext> tag to be skipped when …
1:57 PM Changeset [3305] by Nicklas Nordborg
Added option to not include <helptext> sections in the HTML or PDF …
11:00 AM Ticket #546 (Write "Experiments and analysis" section.) updated by Nicklas Nordborg
Description changed
11:00 AM Ticket #546 (Write "Experiments and analysis" section.) updated by Nicklas Nordborg
Status, Owner changed
10:04 AM Changeset [3304] by Nicklas Nordborg
Fixes #517: Read resources section
10:04 AM Ticket #517 (Read resources section) closed by Nicklas Nordborg
fixed: (In [3304]) Fixes #517: Read resources section
9:58 AM Changeset [3303] by Nicklas Nordborg
Do not generate section TOC for non-chunked sect1 sections.
8:58 AM Changeset [3302] by Nicklas Nordborg
Added missing images
8:57 AM Changeset [3301] by Nicklas Nordborg
Added option to stop the chunking of each sect1 in chapters and to …

May 7, 2007:

5:08 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
(In [3300]) References #549. More text, mainly about groups and roles
5:08 PM Changeset [3300] by Martin Svensson
References #549. More text, mainly about groups and roles
3:36 PM Ticket #517 (Read resources section) updated by Nicklas Nordborg
Status, Owner changed
3:13 PM Changeset [3299] by Jari Häkkinen
Addresses #516.
3:13 PM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
(In [3299]) Addresses #516.
2:52 PM Ticket #526 (Read "Projects and the permission system") updated by Nicklas Nordborg
Owner changed
2:51 PM Ticket #526 (Read "Projects and the permission system") updated by Nicklas Nordborg
Status, Description, Summary, Priority changed
2:50 PM Changeset [3298] by Nicklas Nordborg
References #526: Write "Projects and the permission system" Now ready …
2:50 PM Ticket #526 (Read "Projects and the permission system") updated by Nicklas Nordborg
(In [3298]) References #526: Write "Projects and the permission …
2:45 PM Ticket #582 ('Removed' option doesn't work when listing project items) created by Nicklas Nordborg
1. You must have a project with at least one item. 2. Go to View -> …
1:34 PM Changeset [3297] by Nicklas Nordborg
Do not hide form elements for browsers that can handle layers …
1:09 PM Changeset [3296] by Nicklas Nordborg
Changes to make web help texts look better.
12:27 PM Ticket #525 (Read "Using the web client") updated by Nicklas Nordborg
Owner, Summary, Status, Description, Priority changed
12:25 PM Ticket #525 (Read "Using the web client") updated by Nicklas Nordborg
(In [3295]) References #525: Write "Using the web client" Now ready …
12:25 PM Changeset [3295] by Nicklas Nordborg
References #525: Write "Using the web client" Now ready for reading.
12:10 PM Changeset [3294] by Jari Häkkinen
Added config file for svndigest.
10:12 AM Ticket #548 (Read "Installing plug-ins" section) updated by Jari Häkkinen
Priority changed
9:20 AM Changeset [3293] by Jari Häkkinen
Fixing svn prperties.
9:18 AM Changeset [3292] by Jari Häkkinen
Addresses #516. Upgrade instructions writing done.
9:18 AM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
(In [3292]) Addresses #516. Upgrade instructions writing done.
9:17 AM Changeset [3291] by Jari Häkkinen
Minor changes.

May 4, 2007:

4:10 PM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
(In [3290]) References #549. More new text
4:10 PM Changeset [3290] by Martin Svensson
References #549. More new text

May 3, 2007:

11:13 PM Changeset [3289] by Nicklas Nordborg
Create directories needed to build docbook documentation.
4:24 PM Changeset [3288] by Martin Svensson
Reference #549. More to come.…
9:34 AM Ticket #549 (Read "Administrate users/groups/roles" section.) updated by Martin Svensson
(In [3287]) References #549.
9:34 AM Changeset [3287] by Martin Svensson
References #549.
9:21 AM Ticket #555 (Read the short document on how to write the BASE document.) updated by Martin Svensson
(In [3286]) References #555 Complemented with information about using …
9:21 AM Changeset [3286] by Martin Svensson
References #555 Complemented with information about using XsltProc
8:48 AM Changeset [3285] by Martin Svensson
Fixed docbook-compilation-errors in Windows
Note: See TracTimeline for information about the timeline view.