Timeline



Mar 26, 2007:

8:59 PM Ticket #555 (Read the short document on how to write the BASE document.) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/developerdoc/write_ …
8:41 PM Ticket #554 (Write "Core developer reference.") created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/html/developerdoc/core_ref/core_ …
8:40 PM Ticket #553 (Read "Javadoc" section) created by Jari Häkkinen
the section should describe how to write Javadoc within BASE. There is …
8:40 PM Ticket #552 (Write "API overview" section) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/html/developerdoc/api/api_overvi
8:38 PM Ticket #551 (Read "Plugin developer" section) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/html/developerdoc/plugin_develop
8:36 PM Ticket #523 (Write "Overview of BASE" section in Overview part) updated by Jari Häkkinen
Description, Summary changed
8:36 PM Ticket #550 (Write "Overview of BASE" section in Developer documentation part) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/html/developerdoc/develop_overvi
8:34 PM Ticket #549 (Read "Administrate users/groups/roles" section.) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/admindoc/user_admin
8:33 PM Ticket #548 (Read "Installing plug-ins" section) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/admindoc/plugin_ins
8:32 PM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
Summary changed
8:31 PM Ticket #547 (Read"Import and Export data") created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/userdoc/import_expo
8:30 PM Ticket #546 (Write "Experiments and analysis" section.) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/html/userdoc/analysis/experiment
8:29 PM Ticket #545 (Read "Biomaterials" section.) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/userdoc/biomaterial
8:28 PM Ticket #544 (Write "Array LIMS" section.) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/array_lims.html
8:27 PM Ticket #543 (Read "Software" section.) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/userdoc/software/so
8:26 PM Ticket #542 (Read "Hardware" section.) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/userdoc/hardware/ha
6:21 PM Changeset [3216] by dominic
5:03 PM Ticket #528 (Write "File management" section) updated by Martin Svensson
(In [3215]) References #528. File management doc.
5:03 PM Changeset [3215] by Martin Svensson
References #528. File management doc.
4:01 PM Changeset [3214] by Nicklas Nordborg
Using the menu bar section.
2:39 PM Changeset [3213] by Nicklas Nordborg
Fixes #541: 'Edit plugin' page doesn't work for Internet Explorer
2:39 PM Ticket #541 ('Edit plugin' page doesn't work for Internet Explorer) closed by Nicklas Nordborg
fixed: (In [3213]) Fixes #541: 'Edit plugin' page doesn't work for Internet …
2:37 PM edit_plugin_ie.png attached to Ticket #541 by Nicklas Nordborg
Corrupt display in IE
2:35 PM Ticket #541 ('Edit plugin' page doesn't work for Internet Explorer) created by Nicklas Nordborg
Internet explorer reportes an error and the display is corrupt.
2:30 PM Changeset [3212] by dominic
constants and sample pooling
2:16 PM Changeset [3211] by Nicklas Nordborg
Border and background around warnings in the same way as around notes.
1:21 PM Ticket #525 (Read "Using the web client") updated by Nicklas Nordborg
Status, Owner changed
1:19 PM Ticket #520 (SpotBatcher doesn't handle Float.NaN values) closed by Nicklas Nordborg
fixed: (In [3210]) Fixes #520: SpotBatcher doesn't handle Float.NaN values …
1:19 PM Changeset [3210] by Nicklas Nordborg
Fixes #520: SpotBatcher doesn't handle Float.NaN values Also changed …
1:18 PM Ticket #520 (SpotBatcher doesn't handle Float.NaN values) updated by Nicklas Nordborg
Summary changed
10:54 AM Changeset [3209] by dominic
default export file names and added annotations
9:46 AM Ticket #520 (SpotBatcher doesn't handle Float.NaN values) updated by Nicklas Nordborg
I have now investigated this further. The error only happens if the …

Mar 24, 2007:

12:12 PM Ticket #540 (Read "Protocols" section) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/userdoc/protocols/p

Mar 23, 2007:

4:57 PM Changeset [3208] by Martin Svensson
Added more subsections to file_system.xml. More information to export …
3:09 PM Ticket #539 (Change the message when failing with connecting to a DB to be more clear) created by Martin Svensson
As it is now the messages when BASE fails with connecting to a …
2:27 PM Ticket #538 (Add tag name to the documentation) closed by Martin Svensson
fixed: (In [3207]) Fixes #538 Add tag name to the documentation
2:27 PM Changeset [3207] by Martin Svensson
Fixes #538 Add tag name to the documentation
1:51 PM Ticket #536 (Generate helptext import file when running ant dist) updated by Martin Svensson
Description changed
1:36 PM Ticket #538 (Add tag name to the documentation) updated by Martin Svensson
Status changed
1:36 PM Ticket #538 (Add tag name to the documentation) created by Martin Svensson
The tag name should also be included at the same place where revision …
1:31 PM Ticket #537 (Import documentation helptexts when installing BASE2) created by Martin Svensson
The helptext-file that is generated from docbook documentation should …
1:24 PM Ticket #536 (Generate helptext import file when running ant dist) created by Martin Svensson
The generation of help text from docbook documentation should be made …
1:17 PM Ticket #535 (Use docbook's stylesheet in BASE2's helptexts) created by Martin Svensson
The helptexts generated from the documentation(docbook) source need …
1:08 PM Ticket #534 (Read "Annotations" section.) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/userdoc/annotations
1:07 PM Ticket #532 (Read "Jobs" section) updated by Jari Häkkinen
Type changed
1:07 PM Ticket #533 (Read "Reporters" section.) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/userdoc/reporters/r
1:07 PM Ticket #532 (Read "Jobs" section) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/html/userdoc/jobs/jobs.html
12:58 PM Ticket #528 (Write "File management" section) updated by Jari Häkkinen
Summary changed
11:36 AM Changeset [3206] by Martin Svensson
Fixes #529 Add link to helptext in 'upload new file' pop-up
11:36 AM Ticket #529 (Add link to help text in 'upload new file'- pop-up) closed by Martin Svensson
fixed: (In [3206]) Fixes #529 Add link to helptext in 'upload new file' pop-up
11:34 AM Ticket #529 (Add link to help text in 'upload new file'- pop-up) updated by Martin Svensson
Status, Milestone changed
9:15 AM Changeset [3205] by Martin Svensson
Fixes #531 Table exporter plugin should have immediate execution permission
9:15 AM Ticket #531 (Table exporter plugin should have immediate execution permission) closed by Martin Svensson
fixed: (In [3205]) Fixes #531 Table exporter plugin should have immediate …
8:35 AM Ticket #531 (Table exporter plugin should have immediate execution permission) updated by Martin Svensson
Status, Owner changed

Mar 22, 2007:

7:52 PM Ticket #531 (Table exporter plugin should have immediate execution permission) created by Nicklas Nordborg
The installation program doesn't give the …
6:20 PM Changeset [3204] by dominic
fixes to experimental factor values
6:07 PM Ticket #530 (Create an 'Archive and Download' button from the 'File and ...) closed by Nicklas Nordborg
duplicate: See #451
5:14 PM Ticket #530 (Create an 'Archive and Download' button from the 'File and ...) created by base
Rationale: Help the Process of depositing data to public repositories. …
4:00 PM Changeset [3203] by Martin Svensson
References #528 First outline of file system documentation
4:00 PM Ticket #528 (Write "File management" section) updated by Martin Svensson
(In [3203]) References #528 First outline of file system documentation
2:49 PM Ticket #529 (Add link to help text in 'upload new file'- pop-up) created by Martin Svensson
Currently there is no link to any help text in the pop-up window when …
2:28 PM Ticket #528 (Write "File management" section) updated by Martin Svensson
Owner, Status changed
2:21 PM Ticket #515 (Add date of html pages generation to the first page) closed by Martin Svensson
fixed: (In [3202]) Fixes #515 Add date of html pages generation to the first …
2:21 PM Changeset [3202] by Martin Svensson
Fixes #515 Add date of html pages generation to the first page. The …
10:25 AM Changeset [3201] by dominic
New changes to fix the shifting of parameter and biomaterialxteristics …
8:15 AM Ticket #515 (Add date of html pages generation to the first page) updated by Martin Svensson
Owner, Status changed

Mar 21, 2007:

11:15 PM Ticket #528 (Write "File management" section) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/file_system.html
11:14 PM Ticket #527 (Read "Trashcan" section.) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/userdoc/trashcan/tr
11:12 PM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
Type, Summary changed
http://base.thep.lu.se/chrome/site/doc/docbook/installation_upgrade.html
11:11 PM Ticket #526 (Read "Projects and the permission system") created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/userdoc/project_per
11:09 PM Ticket #525 (Read "Using the web client") created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/docbook/html/userdoc/webclient/w
11:08 PM Ticket #524 (Read "Overview of user documentation" section) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/html/userdoc/about/about.html
11:06 PM Ticket #523 (Write "Overview of BASE" section in Overview part) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/html/overviewdoc/overview/base_o
11:05 PM Ticket #522 (Write "Why use BASE" section) created by Jari Häkkinen
http://base.thep.lu.se/chrome/site/doc/html/overviewdoc/why_base/why_ba
11:02 PM Ticket #521 (Add creation of PDF document of the BASE docbook) created by Jari Häkkinen
Following items need to be adjusted in the pdf-output(please feel free …
4:09 PM Changeset [3200] by Martin Svensson
Some changes in the chapter of import and export of data in the …
10:49 AM Changeset [3199] by dominic
New changes to fix the shifting of parameter columns

Mar 20, 2007:

11:15 PM Ticket #520 (SpotBatcher doesn't handle Float.NaN values) updated by Nicklas Nordborg
Owner, Status, Milestone changed
An empty line is legal and will be imported. If you want to avoid this …
4:52 PM Ticket #520 (SpotBatcher doesn't handle Float.NaN values) created by base
From Steve Taylor An is generated error when trying to create a New …
2:42 PM Changeset [3198] by Martin Svensson
Added an ant task and a xsl stylesheet for helptext-import-file generation.

Mar 19, 2007:

6:35 PM Ticket #519 (Copy Set of Annotations from one Template Item to Several Items in one go) created by base
For Annotating 10 Samples with 10 Annotation Type values / samples, …
5:06 PM Ticket #518 (Database version in about view) created by Johan Enell
The sql database version should be displayed in the about view.
2:31 PM Changeset [3197] by Nicklas Nordborg
More documentation about the web client
9:10 AM Ticket #517 (Read resources section) created by Jari Häkkinen
We should have a section describing the available resources such as …
9:05 AM Ticket #515 (Add date of html pages generation to the first page) updated by Jari Häkkinen
Type changed
9:05 AM Ticket #516 (Read "Installation and upgrade" section.) updated by Jari Häkkinen
Component, Status changed
9:05 AM Ticket #516 (Read "Installation and upgrade" section.) created by Jari Häkkinen
Job agents will be written later.
9:00 AM Ticket #515 (Add date of html pages generation to the first page) created by Jari Häkkinen
I think there should be date displayed on the first page of the …
7:49 AM Changeset [3196] by Nicklas Nordborg
Moved docbook images to figures directory.

Mar 16, 2007:

6:09 PM Ticket #513 (unable to view samples on "samples" page) closed by Nicklas Nordborg
duplicate: See #509
4:34 PM Ticket #512 (Feature request: switch user stays on same page if possible) updated by base
Replying to nicklas: > That was how it worked at first. …
1:32 PM Ticket #514 (Change permissions in Power User) updated by Nicklas Nordborg
What is the reason for the change? When the roles were specified the …
9:33 AM Ticket #514 (Change permissions in Power User) created by Johan Enell
I think that the permission to create Reporters should be removed from …
7:37 AM Ticket #513 (unable to view samples on "samples" page) created by base
There appears to be a problem with the "samples" page (on …

Mar 15, 2007:

5:41 PM Ticket #512 (Feature request: switch user stays on same page if possible) updated by Nicklas Nordborg
Type changed
That was how it worked at first. Then we got into problems if the new …
4:49 PM Ticket #512 (Feature request: switch user stays on same page if possible) created by base
I don't know if this would be possible, or desirable in general, but …

Mar 14, 2007:

3:43 PM Ticket #511 (MGH Plugins from BASE2 not working) closed by Johan Enell
fixed: (In [3195]) Fixes #511
3:43 PM Changeset [3195] by Johan Enell
Fixes #511
3:11 PM Ticket #511 (MGH Plugins from BASE2 not working) updated by Johan Enell
Status, Milestone changed
11:32 AM Ticket #511 (MGH Plugins from BASE2 not working) created by base
I am trying to get the MGH plugins working under base2. I thought I …
1:43 AM Changeset [3194] by Jari Häkkinen
Merged log:trunk#3129:3193 into this branch.
12:20 AM Ticket #349 (Callback for events to plugins) updated by Jari Häkkinen
Milestone changed
12:20 AM Ticket #212 (Array slide import plugin) updated by Jari Häkkinen
Milestone changed
12:19 AM Ticket #23 (Apply button in popup windows?) updated by Jari Häkkinen
Milestone changed
12:18 AM Milestone BASE 2.2.2 completed
Bug fixes for the 2.2.1 release.
12:18 AM Changeset [3193] by Jari Häkkinen
Removed obsolete branch 2.2.2 superseded by source:/branches/2.2.3

Mar 13, 2007:

4:27 PM Changeset [3192] by Martin Svensson
Changed the DOCTYPE in each xml-file of documentation to use the local …
1:34 PM Changeset [3191] by Martin Svensson
Added a helptext element to the documentation-dtd to be used for …
11:05 AM Changeset [3190] by Johan Enell
Merged log:branches/2.2.2#3116:3186 to trunk.

Mar 12, 2007:

11:38 PM Ticket #510 (typos on Trac Developer Information) created by Peter Johansson
In paragraph entitled Test data, "We have an core developers..." …
10:00 PM DownloadPage edited by Jari Häkkinen
2.2.2 released. (diff)
9:55 PM Changeset [3189] by Jari Häkkinen
Bumped version number.
9:49 PM Changeset [3188] by Jari Häkkinen
New bug fix branch for 2.2
8:39 PM Changeset [3187] by Jari Häkkinen
Tagging version 2.2.2
8:38 PM Changeset [3186] by Jari Häkkinen
Bumped version number.
8:36 PM Ticket #491 (MeV plugin shows tag 'ExperimentalFactor' for genes in 'Display' menu) closed by Jari Häkkinen
duplicate: This is not a problem in BASE but rather in the hacked MeV. The issue …
8:12 PM Ticket #508 ('We' shouldn't be looking for file formats) closed by Jari Häkkinen
fixed: (In [3185]) Fixes #508.
8:12 PM Changeset [3185] by Jari Häkkinen
Fixes #508.
7:57 PM Ticket #508 ('We' shouldn't be looking for file formats) updated by Jari Häkkinen
Status, Owner changed
7:57 PM Ticket #491 (MeV plugin shows tag 'ExperimentalFactor' for genes in 'Display' menu) updated by Jari Häkkinen
Status changed
7:34 PM Changeset [3184] by Nicklas Nordborg
Added missing images for list pages
4:54 PM Changeset [3183] by Martin Svensson
More documentation about import and export data
4:48 PM Changeset [3182] by Johan Enell
4:01 PM Changeset [3181] by Nicklas Nordborg
Added some text about list pages
4:01 PM Changeset [3180] by Nicklas Nordborg
Added style to some gui elements. Changed to sans-serif body text.
11:11 AM Changeset [3179] by Martin Svensson
Docbook - chunked files now named after their ids.
9:54 AM Changeset [3178] by Johan Enell
added the section from the draft file
9:52 AM Ticket #509 (Adding new sample prevents other samples from being viewed) closed by Nicklas Nordborg
invalid: This is a problem with MySQL 5.0.27. See mailing list archive: …

Mar 9, 2007:

12:13 PM Ticket #509 (Adding new sample prevents other samples from being viewed) updated by base
Have just noticed we are using MySQL 5.0.27 with BASE 2.2.1, and that …
9:39 AM Ticket #509 (Adding new sample prevents other samples from being viewed) created by base
After creating a new Sample in BASE 2.2.1 I got the error Object …

Mar 8, 2007:

9:18 PM extended-properties.xml attached to Ticket #486 by base
Extended properties file edited by Jeremy Davis-Turak to include …
4:45 PM Changeset [3177] by Martin Svensson
Import data doc
2:24 PM Ticket #508 ('We' shouldn't be looking for file formats) updated by Martin Svensson
Description changed
11:27 AM Changeset [3176] by Johan Enell
added image
10:57 AM Changeset [3175] by Johan Enell
fixed linkes fixed some methodname tags
10:32 AM Changeset [3174] by Nicklas Nordborg
Fixed problem with building docbook in windows.
10:02 AM Ticket #508 ('We' shouldn't be looking for file formats) created by Martin Svensson
The message when no file format were found look like this: 'We …
9:01 AM Changeset [3173] by Martin Svensson
Added a job chapter in the documentation
8:51 AM Ticket #505 (where should be were) closed by Martin Svensson
fixed: (In [3172]) Fixes #505 where should be were
8:50 AM Changeset [3172] by Martin Svensson
Fixes #505 where should be were
8:38 AM Ticket #507 (Path to icons in bioassayset list contains double slash) closed by Martin Svensson
fixed: (In [3171]) Fixes #507 Path to icons in bioassayset list contains …
8:38 AM Changeset [3171] by Martin Svensson
Fixes #507 Path to icons in bioassayset list contains double slash
8:05 AM Ticket #507 (Path to icons in bioassayset list contains double slash) updated by Martin Svensson
Status changed

Mar 7, 2007:

11:10 PM Illumina conversion.txt attached to Ticket #486 by base
R script to convert a multi-array Illumina .csv output file into …
8:22 PM Ticket #507 (Path to icons in bioassayset list contains double slash) created by Nicklas Nordborg
See the report on the mailing list: …
8:00 PM Ticket #506 (Tried to move a file a caused an error) closed by Nicklas Nordborg
invalid: The error message might be a bit cryptic but actually means that there …
6:15 PM Changeset [3170] by Johan Enell
jsp section added and some examples removed
3:18 PM Changeset [3169] by Johan Enell
checked with aspell
2:31 PM Ticket #506 (Tried to move a file a caused an error) created by base
Tried to move a file from Administrator's hom account to template/raw …
12:46 PM Changeset [3168] by Johan Enell
text for InteractivePlugin.getRequestInformation added

Mar 6, 2007:

5:37 PM Changeset [3167] by Johan Enell
5:32 PM Changeset [3166] by Johan Enell
added text to section interfaces/plugin
4:48 PM Changeset [3165] by Martin Svensson
Introduction to import and export data - documentation
4:04 PM Changeset [3164] by Martin Svensson
The first section in a chapter is now placed in a seperated file when …
1:32 PM Changeset [3163] by Martin Svensson
First text written
11:25 AM Changeset [3162] by Martin Svensson
Added copyright text to userdoc/index.xml and some more changes to TOC …
8:45 AM Changeset [3161] by Martin Svensson
Added "id" attribute to each part and chapter in the docbook book. …

Mar 5, 2007:

4:47 PM Changeset [3160] by Martin Svensson
Added the files for developer documentation and set the parser to …
4:24 PM Changeset [3159] by Martin Svensson
Changed the way the "chapter" files are included in the documentation …
3:09 PM Changeset [3158] by Martin Svensson
Created files for admin documentation
2:43 PM Changeset [3157] by Martin Svensson
Created files for user- and overview documentation
2:12 PM Ticket #505 (where should be were) updated by Nicklas Nordborg
Description, Owner, Milestone changed
Should be simple to fix. Search all list_*.jsp pages and replace.
1:47 PM Changeset [3156] by Nicklas Nordborg
Added info about how to build the docbook documentation. Clean up …
1:38 PM Changeset [3155] by Nicklas Nordborg
Ignore generated docbook documentation
1:35 PM Changeset [3154] by Martin Svensson
A couple of more new lines to the contents of documentation
1:34 PM Changeset [3153] by Nicklas Nordborg
Added docbook DTD:s and stylesheets

Mar 1, 2007:

2:48 PM Ticket #505 (where should be were) created by Peter Johansson
'Where' is displayed when 'were' is expected For example * No …

Feb 26, 2007:

12:22 PM Changeset [3152] by Nicklas Nordborg
Fixes #499: Add Hql.entity(BasicData) method
12:22 PM Ticket #499 (Add Hql.entity(BasicData) method) closed by Nicklas Nordborg
fixed: (In [3152]) Fixes #499: Add Hql.entity(BasicData) method
12:14 PM Ticket #499 (Add Hql.entity(BasicData) method) updated by Nicklas Nordborg
Status, Milestone changed
12:10 PM Changeset [3151] by Nicklas Nordborg
Added line about API changes and backwards compatibility
11:45 AM Ticket #501 (Make members of a project readable by all other members) closed by Nicklas Nordborg
fixed: (In [3150]) Fixes #501: Make members of a project readable by all …
11:44 AM Changeset [3150] by Nicklas Nordborg
Fixes #501: Make members of a project readable by all other members
10:49 AM Ticket #501 (Make members of a project readable by all other members) updated by Nicklas Nordborg
Status changed
10:48 AM Changeset [3149] by Nicklas Nordborg
Fixes #502: Experiment Overview warns about missing 'Required by …
10:48 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) closed by Nicklas Nordborg
fixed: (In [3149]) Fixes #502: Experiment Overview warns about missing …
10:47 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) updated by Nicklas Nordborg
Summary, Status changed

Feb 25, 2007:

6:12 PM Ticket #503 (Display more info about items in Experiment overview) updated by Nicklas Nordborg
Description changed
6:11 PM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) updated by Nicklas Nordborg
Description changed
11:34 AM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) created by Nicklas Nordborg
Also, display information about which item the annotation is inherited …
11:32 AM Ticket #503 (Display more info about items in Experiment overview) created by Nicklas Nordborg
When you click on an item in the tree on the left side the right side …
11:28 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) updated by Nicklas Nordborg
Component, Milestone, Owner changed
I am not sure but the […] on line 1581 seems strange. It should …
Note: See TracTimeline for information about the timeline view.