Timeline



Mar 6, 2007:

5:37 PM Changeset [3167] by Johan Enell
5:32 PM Changeset [3166] by Johan Enell
added text to section interfaces/plugin
4:48 PM Changeset [3165] by Martin Svensson
Introduction to import and export data - documentation
4:04 PM Changeset [3164] by Martin Svensson
The first section in a chapter is now placed in a seperated file when …
1:32 PM Changeset [3163] by Martin Svensson
First text written
11:25 AM Changeset [3162] by Martin Svensson
Added copyright text to userdoc/index.xml and some more changes to TOC …
8:45 AM Changeset [3161] by Martin Svensson
Added "id" attribute to each part and chapter in the docbook book. …

Mar 5, 2007:

4:47 PM Changeset [3160] by Martin Svensson
Added the files for developer documentation and set the parser to …
4:24 PM Changeset [3159] by Martin Svensson
Changed the way the "chapter" files are included in the documentation …
3:09 PM Changeset [3158] by Martin Svensson
Created files for admin documentation
2:43 PM Changeset [3157] by Martin Svensson
Created files for user- and overview documentation
2:12 PM Ticket #505 (where should be were) updated by Nicklas Nordborg
Owner, Description, Milestone changed
Should be simple to fix. Search all list_*.jsp pages and replace.
1:47 PM Changeset [3156] by Nicklas Nordborg
Added info about how to build the docbook documentation. Clean up …
1:38 PM Changeset [3155] by Nicklas Nordborg
Ignore generated docbook documentation
1:35 PM Changeset [3154] by Martin Svensson
A couple of more new lines to the contents of documentation
1:34 PM Changeset [3153] by Nicklas Nordborg
Added docbook DTD:s and stylesheets

Mar 1, 2007:

2:48 PM Ticket #505 (where should be were) created by Peter Johansson
'Where' is displayed when 'were' is expected For example * No …

Feb 26, 2007:

12:22 PM Changeset [3152] by Nicklas Nordborg
Fixes #499: Add Hql.entity(BasicData) method
12:22 PM Ticket #499 (Add Hql.entity(BasicData) method) closed by Nicklas Nordborg
fixed: (In [3152]) Fixes #499: Add Hql.entity(BasicData) method
12:14 PM Ticket #499 (Add Hql.entity(BasicData) method) updated by Nicklas Nordborg
Status, Milestone changed
12:10 PM Changeset [3151] by Nicklas Nordborg
Added line about API changes and backwards compatibility
11:45 AM Ticket #501 (Make members of a project readable by all other members) closed by Nicklas Nordborg
fixed: (In [3150]) Fixes #501: Make members of a project readable by all …
11:44 AM Changeset [3150] by Nicklas Nordborg
Fixes #501: Make members of a project readable by all other members
10:49 AM Ticket #501 (Make members of a project readable by all other members) updated by Nicklas Nordborg
Status changed
10:48 AM Changeset [3149] by Nicklas Nordborg
Fixes #502: Experiment Overview warns about missing 'Required by …
10:48 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) closed by Nicklas Nordborg
fixed: (In [3149]) Fixes #502: Experiment Overview warns about missing …
10:47 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) updated by Nicklas Nordborg
Status, Summary changed

Feb 25, 2007:

6:12 PM Ticket #503 (Display more info about items in Experiment overview) updated by Nicklas Nordborg
Description changed
6:11 PM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) updated by Nicklas Nordborg
Description changed
11:34 AM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) created by Nicklas Nordborg
Also, display information about which item the annotation is inherited …
11:32 AM Ticket #503 (Display more info about items in Experiment overview) created by Nicklas Nordborg
When you click on an item in the tree on the left side the right side …
11:28 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) updated by Nicklas Nordborg
Owner, Component, Milestone changed
I am not sure but the […] on line 1581 seems strange. It should …

Feb 24, 2007:

7:10 PM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) created by base
WindowsXP Apache 5.5.15 Base2.3.0 trunk -AnnotationType defined and …
6:40 PM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) updated by base
Still on the Experiment Item View, Allow Editing of Experimental …

Feb 23, 2007:

8:45 PM Ticket #501 (Make members of a project readable by all other members) created by Nicklas Nordborg
To get READ permission for a USER item the logged in user must either …
8:42 PM Ticket #500 (Document the Include class) updated by Nicklas Nordborg
Owner, Component changed
8:42 PM Ticket #500 (Document the Include class) created by Nicklas Nordborg
As it is now it is not very useful. * There is no information about …
8:37 PM Ticket #499 (Add Hql.entity(BasicData) method) updated by Nicklas Nordborg
Summary changed
8:36 PM Ticket #499 (Add Hql.entity(BasicData) method) created by Nicklas Nordborg
To complement the Hql.entity(BasicItem) method.
4:12 PM Changeset [3148] by Martin Svensson
Contents of documentation
8:14 AM Changeset [3147] by Martin Svensson
References #146. Added help texts for user.preferences
8:14 AM Ticket #146 (Add help text to the web gui) updated by Martin Svensson
(In [3147]) References #146. Added help texts for user.preferences
5:54 AM Changeset [3146] by Martin Svensson
More added to the content of documentation

Feb 21, 2007:

3:37 PM Changeset [3145] by Martin Svensson
Added more to the content of documentation
3:24 PM Ticket #498 (Move Array batches on Array design view page) updated by Martin Svensson
Description changed
3:23 PM Ticket #498 (Move Array batches on Array design view page) created by Martin Svensson
Array batches tend to be very far down on a view page for an array …
11:05 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by Nicklas Nordborg
Summary changed

Feb 20, 2007:

3:13 PM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) closed by Martin Svensson
fixed: (In [3144]) Fixes #484 Export plug-in is not shown in plug-ins list
3:13 PM Changeset [3144] by Martin Svensson
Fixes #484 Export plug-in is not shown in plug-ins list
3:11 PM Changeset [3143] by Nicklas Nordborg
Added draft for table of contents of documentation
2:44 PM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by Johan Enell
Owner changed
Change the text to "Analyse" sounds like a good idea. This is web so I …
10:52 AM Changeset [3142] by Martin Svensson
Fixes #493 Trashcan display item owned by other users in some cases
10:52 AM Ticket #493 (Trashcan display item owned by other users in some cases) closed by Martin Svensson
fixed: (In [3142]) Fixes #493 Trashcan display item owned by other users in …
10:35 AM Changeset [3141] by Nicklas Nordborg
Bumped version to 2.2.2pre
9:12 AM Changeset [3140] by Nicklas Nordborg
Fixes #495: Pb when creating Hybs from Labeled Extracts View Page
9:12 AM Ticket #495 (Pb when creating Hybs from Labeled Extracts View Page) closed by Nicklas Nordborg
fixed: (In [3140]) Fixes #495: Pb when creating Hybs from Labeled Extracts …
9:12 AM Ticket #495 (Pb when creating Hybs from Labeled Extracts View Page) updated by Nicklas Nordborg
Milestone, Status, Owner changed
9:08 AM Ticket #496 (Minor Display Glitch on 'Annotation & Parameter' Tab on all Item View) closed by Nicklas Nordborg
fixed: (In [3139]) Fixes #496: Minor Display Glitch on 'Annotation & …
9:08 AM Changeset [3139] by Nicklas Nordborg
Fixes #496: Minor Display Glitch on 'Annotation & Parameter' Tab on …
9:05 AM Ticket #496 (Minor Display Glitch on 'Annotation & Parameter' Tab on all Item View) updated by Nicklas Nordborg
Milestone, Priority, Status, Owner changed
9:05 AM Ticket #493 (Trashcan display item owned by other users in some cases) updated by Martin Svensson
Owner, Status changed
8:34 AM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) closed by Nicklas Nordborg
fixed: (In [3138]) Fixes #497: Floating point numbers with leading zeroes in …
8:34 AM Changeset [3138] by Nicklas Nordborg
Fixes #497: Floating point numbers with leading zeroes in the decimal …
8:30 AM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) updated by Nicklas Nordborg
Summary changed
8:29 AM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) updated by Nicklas Nordborg
Priority, Status, Owner, Milestone changed

Feb 19, 2007:

1:55 PM Ticket #494 (Unexpected Error on JSP for Experiment Overview) closed by Martin Svensson
fixed: (In [3137]) Fixes #494 Unexpected Error on JSP for Experiment Overview
1:55 PM Changeset [3137] by Martin Svensson
Fixes #494 Unexpected Error on JSP for Experiment Overview
11:11 AM Ticket #466 (Remaining Quantity not display in extracts) closed by Martin Svensson
fixed: (In [3136]) Fixes #466 Remaining Quantity not displayed in extracts.
11:11 AM Changeset [3136] by Martin Svensson
Fixes #466 Remaining Quantity not displayed in extracts.

Feb 16, 2007:

9:10 AM Changeset [3135] by Jari Häkkinen
Added missing import statement.
9:04 AM Changeset [3134] by Jari Häkkinen
Changed to also get shared projects.
8:58 AM Changeset [3133] by Jari Häkkinen
Merged log:trunk#3001:3128 into this branch.

Feb 15, 2007:

3:11 PM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) created by base
Version BASE 2.3.0pre (build #3130; schema #29) Web server Apache …
11:06 AM Ticket #494 (Unexpected Error on JSP for Experiment Overview) updated by Nicklas Nordborg
Owner, Component, Milestone changed
I think this happens if there is a raw bioassay without annotations. …
9:56 AM Ticket #496 (Minor Display Glitch on 'Annotation & Parameter' Tab on all Item View) created by base
Version BASE 2.3.0pre (build #3130; schema #29) Web server Apache …
9:50 AM Ticket #495 (Pb when creating Hybs from Labeled Extracts View Page) created by base
Version BASE 2.3.0pre (build #3130; schema #29) Web server Apache …
9:40 AM Ticket #494 (Unexpected Error on JSP for Experiment Overview) created by base
I have loaded 2 experiments, one gives me the following problem …

Feb 13, 2007:

9:45 AM Ticket #493 (Trashcan display item owned by other users in some cases) created by Nicklas Nordborg
If logged in as a user with admin permissions this user is able to see …
9:35 AM Ticket #466 (Remaining Quantity not display in extracts) updated by Nicklas Nordborg
I don't think the updateToSchemaVersion29() works for Postgres. See …
8:49 AM Ticket #466 (Remaining Quantity not display in extracts) updated by Martin Svensson
Status changed
8:48 AM Ticket #466 (Remaining Quantity not display in extracts) updated by Martin Svensson
Owner, Status changed
2:05 AM Changeset [3132] by Jari Häkkinen
Removed stray carriage return characters.
2:03 AM Changeset [3131] by Jari Häkkinen
Removed stray carriage return characters.
1:42 AM Changeset [3130] by Jari Häkkinen
Fixed Id tag.

Feb 12, 2007:

1:31 PM Ticket #489 (Build #0 is reported after upgrade to 2.2 and 2.2.1) closed by Nicklas Nordborg
fixed: (In [3129]) Fixes #489: Build #0 is reported after upgrade to 2.2 and …
1:31 PM Changeset [3129] by Nicklas Nordborg
Fixes #489: Build #0 is reported after upgrade to 2.2 and 2.2.1 …
12:01 PM Ticket #489 (Build #0 is reported after upgrade to 2.2 and 2.2.1) updated by Jari Häkkinen
Milestone changed
12:00 PM Ticket #490 (BASE demo server issue) updated by Jari Häkkinen
Milestone changed
11:59 AM Ticket #490 (BASE demo server issue) closed by Jari Häkkinen
fixed
11:59 AM Ticket #486 (Import raw data from the Illumina platform) updated by Jari Häkkinen
Milestone changed
11:58 AM Ticket #485 (A user's group membership is not listed.) updated by Jari Häkkinen
Milestone changed
11:57 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by Jari Häkkinen
Milestone changed
11:56 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by Jari Häkkinen
Milestone changed
Change the 'run plug-in' message in GUI to 'run analysis'.
11:54 AM Ticket #481 (Reporter importer plug-in should report how many reporters were ...) updated by Jari Häkkinen
Milestone changed
11:53 AM Ticket #480 (Verify values in extended-properties.xml and raw-data-types.xml) updated by Jari Häkkinen
Milestone changed
11:52 AM Ticket #479 (BioAssaySetExport should allow immediate download.) updated by Jari Häkkinen
Milestone, Version changed
11:52 AM Ticket #470 (Improve batch upload to support tar:ed files) updated by Jari Häkkinen
Milestone, Version changed
11:51 AM Ticket #469 (Improve error handling of invalid values in import plugins) updated by Jari Häkkinen
Milestone changed
11:50 AM Ticket #456 (Mass edit) updated by Jari Häkkinen
Milestone changed
11:48 AM Ticket #446 (File browser should have a possiblity to show creation/modifcation time) updated by Jari Häkkinen
Milestone changed
11:48 AM Ticket #445 (Plug-in writers should check that the plug-in has the proper ...) updated by Jari Häkkinen
Milestone changed
11:44 AM Ticket #435 (A check for reporter information is needed when adding/using ...) updated by Jari Häkkinen
Milestone changed
11:44 AM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) updated by Jari Häkkinen
Milestone changed
11:41 AM Ticket #411 (Extending compressed file support and storage) updated by Jari Häkkinen
Milestone changed
11:37 AM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by Jari Häkkinen
Milestone changed
11:36 AM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) updated by Jari Häkkinen
Milestone changed
11:33 AM Ticket #358 (Better info from Migration tool) updated by Jari Häkkinen
Milestone changed
11:32 AM Ticket #353 (Create connectivity from R/BioConductor to BASE) updated by Jari Häkkinen
Milestone changed
11:32 AM Ticket #349 (Callback for events to plugins) closed by Jari Häkkinen
wontfix
11:31 AM Ticket #338 (Tab2Mage import plugin) updated by Jari Häkkinen
Milestone changed
11:31 AM Ticket #337 (Tab2Mage export plugin) updated by Jari Häkkinen
Milestone changed
11:30 AM Ticket #333 (Administrator documentation) updated by Jari Häkkinen
Milestone changed
11:30 AM Ticket #326 (Mass annotation plug-in) updated by Jari Häkkinen
Milestone changed
11:29 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by Jari Häkkinen
Performance tuning for the whole application is also needed.
11:28 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by Jari Häkkinen
Milestone changed
11:27 AM Ticket #252 (Make the trashcan smarter when deleting items) updated by Jari Häkkinen
Milestone changed
11:26 AM Ticket #212 (Array slide import plugin) closed by Jari Häkkinen
wontfix
11:23 AM Ticket #146 (Add help text to the web gui) updated by Jari Häkkinen
Milestone changed
11:22 AM Ticket #133 (Write documentation: 3c) Internals of the core API - Data validation) updated by Jari Häkkinen
Priority, Milestone changed
11:22 AM Ticket #136 (Write documentation: 3c) Internals of the core API - Job queue management) updated by Jari Häkkinen
Milestone changed
11:22 AM Ticket #134 (Write documentation: 3c) Internals of the core API - Checking quota) updated by Jari Häkkinen
Milestone changed
11:21 AM Ticket #133 (Write documentation: 3c) Internals of the core API - Data validation) updated by Jari Häkkinen
Priority changed
11:21 AM Ticket #132 (Write documentation: 3c) Internals of the core API - Transaction handling) updated by Jari Häkkinen
Milestone, Priority changed
11:20 AM Ticket #23 (Apply button in popup windows?) closed by Jari Häkkinen
wontfix
11:17 AM Ticket #338 (Tab2Mage import plugin) updated by Jari Häkkinen
Milestone changed
11:16 AM Ticket #492 (Web services) created by Jari Häkkinen
The outline for the web services implementation: 1. We are going to …

Feb 9, 2007:

10:26 PM WikiStart edited by Jari Häkkinen
Replaced 2.0 with 2. Also removed ref to old demo server. (diff)
4:39 PM Changeset [3128] by Johan Enell
Added javadoc
12:22 PM Ticket #491 (MeV plugin shows tag 'ExperimentalFactor' for genes in 'Display' menu) updated by Jari Häkkinen
Description changed
12:22 PM Ticket #491 (MeV plugin shows tag 'ExperimentalFactor' for genes in 'Display' menu) created by Jari Häkkinen
which it should not do. The ExperimentalFactors tag is an internal …
1:57 AM Ticket #490 (BASE demo server issue) created by base
[…]

Feb 8, 2007:

4:04 PM Milestone BASE 2.2.1 completed
Bug fixes for the 2.2 release.
4:04 PM Changeset [3127] by Jari Häkkinen
Removed obsolete branch 2.2.1.
3:57 PM Changeset [3126] by Johan Enell
Merged log:branches/2.2.1#3119:3123 trunk.
2:39 PM Ticket #489 (Build #0 is reported after upgrade to 2.2 and 2.2.1) created by Jari Häkkinen
2:35 PM DownloadPage edited by Jari Häkkinen
2.2.1 released. (diff)
2:28 PM Changeset [3125] by Jari Häkkinen
New bug six branch for 2.2
2:18 PM Changeset [3124] by Jari Häkkinen
Tagging version 2.2.1
2:17 PM Changeset [3123] by Jari Häkkinen
Bumped version to 2.2.1
2:04 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) closed by Jari Häkkinen
fixed: This issue is returned to the original ticket:466. The upgrade problem …
1:53 PM Ticket #466 (Remaining Quantity not display in extracts) reopened by Jari Häkkinen
Reopened since the previous upgrade failed.
12:11 PM Ticket #487 (Update script must check the schema version before trying to update) closed by Martin Svensson
fixed: (In [3122]) Fixes #487. Update script must check the schema version …
12:11 PM Changeset [3122] by Martin Svensson
Fixes #487. Update script must check the schema version before trying …
11:48 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Johan Enell
(In [3121]) References #488. Update schema version without validating …
11:47 AM Changeset [3121] by Johan Enell
References #488. Update schema version without validating the measured …
10:39 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Martin Svensson
(In [3120]) References #488. Update schema version without validating …
10:38 AM Changeset [3120] by Martin Svensson
References #488. Update schema version without validating the measured …
10:10 AM DownloadPage edited by Jari Häkkinen
(diff)
2:22 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Jari Häkkinen
I upgraded a couple of more servers. I noticed that servers that …
1:57 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Jari Häkkinen
Trying to run the update script once more on the same database gives …
1:53 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Jari Häkkinen
Updating another server gives a similar stack trace as Chrises […]
1:42 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Jari Häkkinen
I have successfully upgraded from 2.1.2 to 2.2. This is of course not …

Feb 7, 2007:

11:44 PM Ticket #487 (Update script must check the schema version before trying to update) updated by Nicklas Nordborg
I checked the code and the first place to check the schema version is …
11:24 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Nicklas Nordborg
Description changed
11:23 PM Ticket #487 (Update script must check the schema version before trying to update) updated by Nicklas Nordborg
Description changed
11:15 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by Nicklas Nordborg
Summary changed
11:14 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) created by Nicklas Nordborg
Here is the stacktrace: […] For more info see the mailing list …
11:10 PM Ticket #487 (Update script must check the schema version before trying to update) created by Nicklas Nordborg
If the schema version is higher than expected the update script must …
12:45 PM DownloadPage edited by Jari Häkkinen
(diff)
12:45 PM DownloadPage edited by Jari Häkkinen
(diff)
12:36 PM Milestone BASE 2.2 completed
Doc, help, larger feature changes.
12:36 PM DownloadPage edited by Jari Häkkinen
Releasing v2.2 (diff)
12:21 PM Changeset [3119] by Jari Häkkinen
New bug fix branch for 2.2
12:18 PM Ticket #457 (Update install instructions for release 2.2) closed by Jari Häkkinen
fixed
12:17 PM Changeset [3118] by Jari Häkkinen
Tagging version 2.2
12:15 PM Changeset [3117] by Jari Häkkinen
Changed link to BASE (MeV) hacks site.
11:14 AM Changeset [3116] by Jari Häkkinen
Bumped version number to 2.2.0. Added Micha to contribution list.
9:57 AM Changeset [3115] by Jari Häkkinen
Added text on how to stop unintentional migration.
2:14 AM Changeset [3114] by Jari Häkkinen
Cleaning.
2:13 AM Changeset [3113] by Jari Häkkinen
Updated installation document.
2:13 AM Changeset [3112] by Jari Häkkinen
Removed MeV export of an unneeded reporter column.
12:51 AM Changeset [3111] by Jari Häkkinen
Added MeV to the list of 3rd party components and to the tools list.

Feb 6, 2007:

4:18 PM Ticket #10 (Analysis: Hierarchical clustering) closed by Jari Häkkinen
fixed: Hierarchical clustering is now supported through MeV …
4:17 PM Ticket #352 (Connect parts of the TM4 software suite to BASE) closed by Jari Häkkinen
fixed: MeV is now integrated as a Java Web Start application. It requires …
3:59 PM Ticket #464 (Permission denied when creting AnyToAny) closed by Jari Häkkinen
fixed
3:55 PM Changeset [3110] by Jari Häkkinen
Addresses #10 and #352. Unique temporary filenames used at client side.
3:55 PM Tickets #10,​352 batch updated by Jari Häkkinen
(In [3110]) Addresses #10 and #352. Unique temporary filenames used at …
3:54 PM Changeset [3109] by Jari Häkkinen
Blank experimental factor labels are propagated properly in MeV export.
3:28 PM Changeset [3108] by Johan Enell
BASE1PluginExecuter uses BioAssaySetExporter to create basefile
3:26 PM Ticket #439 (Base file export) closed by Johan Enell
fixed: (In [3107]) Fixes #439
3:26 PM Changeset [3107] by Johan Enell
Fixes #439
3:11 PM Changeset [3106] by Jari Häkkinen
Addresses #10 and #352. Removed hard coded indexes for datamatrix …
3:11 PM Tickets #10,​352 batch updated by Jari Häkkinen
(In [3106]) Addresses #10 and #352. Removed hard coded indexes for …
3:09 PM Tickets #10,​352 batch updated by Jari Häkkinen
(In [3105]) Addresses #10 and #352. MeV uses system tmp directory …
3:09 PM Changeset [3105] by Jari Häkkinen
Addresses #10 and #352. MeV uses system tmp directory system properties.
11:03 AM Ticket #146 (Add help text to the web gui) updated by Martin Svensson
(In [3104]) References #146. Added help texts for view user
11:03 AM Changeset [3104] by Martin Svensson
References #146. Added help texts for view user
11:00 AM Ticket #146 (Add help text to the web gui) updated by Martin Svensson
(In [3103]) References #146. Modified the function of the toolbar that …
11:00 AM Changeset [3103] by Martin Svensson
References #146. Modified the function of the toolbar that is used to …
10:14 AM Ticket #486 (Import raw data from the Illumina platform) created by Nicklas Nordborg
A discussion about importing raw data from the Illumina platform was …

Feb 5, 2007:

11:02 PM Tickets #10,​352 batch updated by Jari Häkkinen
(In [3102]) Addresses #10 and #352. MeV jsp uses Servlet API to …
11:02 PM Changeset [3102] by Jari Häkkinen
Addresses #10 and #352. MeV jsp uses Servlet API to retrieve server …
9:02 PM Ticket #365 (Use java web start to launch plug-ins) closed by Jari Häkkinen
fixed: Mulit experiment viewer, http://www.tm4.org, is started with web …
8:55 PM Ticket #472 (java.lang.OutOfMemoryError: PermGen space) closed by Jari Häkkinen
fixed: Increasing the MaxPermSize solves the problem. Our server is still …
8:53 PM Ticket #471 (Filenames with () are not treated well by trac) closed by Jari Häkkinen
fixed: Fixed in changeset:3066
4:43 PM Tickets #10,​352 batch updated by Jari Häkkinen
(In [3101]) Addresses #10 and #352. Fixed problem with non-appearing …
4:43 PM Changeset [3101] by Jari Häkkinen
Addresses #10 and #352. Fixed problem with non-appearing tool icons in MeV.
3:36 PM Ticket #485 (A user's group membership is not listed.) updated by Martin Svensson
Component, Priority, Owner changed
This only seems to appear with the group/users created with 'test roles'
3:18 PM Ticket #485 (A user's group membership is not listed.) created by Martin Svensson
You have a group, lets say Group A, where some users have been added …
12:19 PM Changeset [3100] by Jari Häkkinen
Addresses #10 and #352. Now actually using the bioassayset used to …
12:19 PM Tickets #10,​352 batch updated by Jari Häkkinen
(In [3100]) Addresses #10 and #352. Now actually using the bioassayset …
12:03 PM Changeset [3099] by Jari Häkkinen
Moved max heap size tag to correct tag.
11:52 AM Ticket #10 (Analysis: Hierarchical clustering) updated by Nicklas Nordborg
(In [3098]) References #10: Hierarchical clustering Added servlet for …
11:52 AM Changeset [3098] by Nicklas Nordborg
References #10: Hierarchical clustering Added servlet for downloading …
11:49 AM Changeset [3097] by Nicklas Nordborg
Fixed permission check problem that caused a query to return items the …
11:37 AM Tickets #10,​352,​365 batch updated by Jari Häkkinen
(In [3096]) Addresses #10, #352, #365. First checkin for JWS use to …
11:37 AM Changeset [3096] by Jari Häkkinen
Addresses #10, #352, #365. First checkin for JWS use to launch MeV.
10:58 AM Changeset [3095] by Martin Svensson
Fixed so the list page of plate mappings not are corrupt when user …
9:31 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by Jari Häkkinen
Milestone changed
9:31 AM Ticket #337 (Tab2Mage export plugin) updated by Jari Häkkinen
Milestone changed
9:30 AM Ticket #333 (Administrator documentation) updated by Jari Häkkinen
Milestone changed
9:30 AM Ticket #146 (Add help text to the web gui) updated by Jari Häkkinen
Milestone changed
8:09 AM Changeset [3094] by Nicklas Nordborg
Fixes #483: Add a direct start icon for export of bioassaysets in …
8:09 AM Ticket #483 (Add a direct start icon for export of bioassaysets in analysis tree) closed by Nicklas Nordborg
fixed: (In [3094]) Fixes #483: Add a direct start icon for export of …
7:52 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by Nicklas Nordborg
Type, Priority changed
Export plugins are shown when you click the "Export" button. Analysis …
7:49 AM Ticket #483 (Add a direct start icon for export of bioassaysets in analysis tree) updated by Nicklas Nordborg
Status, Milestone, Owner, Priority changed
7:43 AM Ticket #483 (Add a direct start icon for export of bioassaysets in analysis tree) updated by Nicklas Nordborg
Type, Summary, Description changed
Split this ticket into two. See #484
7:42 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) created by Nicklas Nordborg
The export plug-in does not show up in the plug-in list for running …
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