Timeline



Jan 27, 2006:

2:55 PM Changeset [1857] by Gregory Vincic
Added view_bioassayset.jsp
2:51 PM Changeset [1856] by Nicklas Nordborg
View scan now use the new view page design Added pages for scan images
1:46 PM Changeset [1855] by Nicklas Nordborg
View raw bioassays now use the new view page design
12:05 PM Changeset [1854] by Nicklas Nordborg
View experiment now use the new view page design
11:57 AM Changeset [1853] by Nicklas Nordborg
View reporter now use the new view page design
11:47 AM Changeset [1852] by Nicklas Nordborg
Plate geometries use the new view page design
11:39 AM Changeset [1851] by Nicklas Nordborg
New design for view and list pages Plate types is the first example

Jan 26, 2006:

3:48 PM Changeset [1850] by Nicklas Nordborg
Plate mapping now uses the new list design
3:05 PM Ticket #30 (Preset is not removed from drop-downlist after it had been deleted) closed by Nicklas Nordborg
fixed: Sort of fixed. The preset is not removed from the list, but no …
3:04 PM Changeset [1849] by Nicklas Nordborg
Partly fixed bug #30: Preset is not removed from drop-downlist after …
2:22 PM Changeset [1848] by Nicklas Nordborg
Plate types are ownable and the owner is now displayed and included in …
2:15 PM Changeset [1847] by Nicklas Nordborg
Plates now use the new list design
1:47 PM Changeset [1846] by Martin Svensson
First revision
12:03 PM Changeset [1845] by Nicklas Nordborg
Added log4j.properties.in and removed log4j.properties so everyone can …
11:57 AM Ticket #24 (Adding an administrator name with non-US characters looks strange) closed by Nicklas Nordborg
fixed: Updated base.config.in to not include any characterEncoding setting.
11:56 AM Ticket #3 (Update doesn't create indexes) closed by Nicklas Nordborg
fixed
11:54 AM Changeset [1844] by Nicklas Nordborg
Switched from SchemaUpdate to SchemaExport in createStaticTables so …
11:53 AM Ticket #33 (The fields in "Columns " button are sometimes too short, i.e. the text ...) created by Jari Häkkinen
When I'm editing "Set column order and visiblity" in the "edit raw …
11:51 AM Ticket #22 (Server configuration. Setting unlimited with G or Gb does not change ...) closed by Nicklas Nordborg
fixed: i) Fixed. Tried to stora too large value in an int. Changed to long.
11:08 AM Ticket #32 (A plugin must set a response status ) created by Nicklas Nordborg
If a plugin doesn't set a respose status, null is returned to the web …
10:36 AM Ticket #31 (Changing list columns - list of visible columns becomes empty) created by Martin Svensson
Webpage: Experiments Step1.Select 'Default Columns' in the drop …
8:40 AM Ticket #18 (BioMaterialEvent.addSource and BioMaterialEvent.removeSource doesn't work) closed by Nicklas Nordborg
fixed
8:37 AM Changeset [1843] by Nicklas Nordborg
Fixed bug #18: BioMaterialEvent.addSource and …
8:36 AM Changeset [1842] by Nicklas Nordborg
vertical align of td and th removed since it didn't work as intended
12:35 AM Changeset [1841] by Jari Häkkinen
Fixed latex to html translation.

Jan 25, 2006:

5:09 PM Ticket #25 (Changing information on how to get an account does not propagete to ...) updated by Nicklas Nordborg
Owner, Status changed
The cause of this behaviour is that those settings are loaded into the …
4:57 PM Changeset [1840] by Nicklas Nordborg
Fixed most of bug #22: Server configuration. Setting unlimited with G …
4:56 PM Ticket #22 (Server configuration. Setting unlimited with G or Gb does not change ...) updated by Nicklas Nordborg
Owner changed
i) Please clarify! Either there is a value OR the unlimited option is …
4:12 PM Changeset [1839] by Nicklas Nordborg
Protocol types now use the new list design
4:12 PM Changeset [1838] by Nicklas Nordborg
Ordinal now gets a default value of 1, instead of 0 which is invalid.
4:04 PM Changeset [1837] by Nicklas Nordborg
System items can no longer be deleted.
2:35 PM Ticket #30 (Preset is not removed from drop-downlist after it had been deleted) created by Martin Svensson
Experiments->Mangage(preset)->Delete a preset. The preset is not …
1:12 PM Changeset [1836] by Gregory Vincic
Added date column and moved 'Run Plugin' button to the BioAssaySet view
11:58 AM Changeset [1835] by Nicklas Nordborg
Removed meta-tag setting the character set. It doesn't work and was …
11:48 AM Changeset [1834] by Nicklas Nordborg
Deleted unused jsp page
11:46 AM Changeset [1833] by Nicklas Nordborg
Plate types and Plate event types now use the new list design
11:45 AM Changeset [1832] by Nicklas Nordborg
Added 'delete' method to RemovableUtil
11:07 AM Changeset [1831] by Gregory Vincic
If page taglib parameter title is null no title is written. This way …
11:05 AM Changeset [1830] by Gregory Vincic
Added LIMIT values to user query
10:21 AM Changeset [1829] by Gregory Vincic
Linked title breadcrumbs to their views
9:55 AM Changeset [1828] by Gregory Vincic
Implemented restore functionality for bioassaysets in the analysis view
9:45 AM Ticket #29 (Filtering News on dates) created by Martin Svensson
Filter News on Start-, News- or End date There is nothing that …
8:47 AM Ticket #3 (Update doesn't create indexes) updated by Nicklas Nordborg
Priority changed
8:46 AM Ticket #24 (Adding an administrator name with non-US characters looks strange) updated by Nicklas Nordborg
Owner changed
This is probably a server configuration problem. The file …
8:25 AM Changeset [1827] by Nicklas Nordborg
Plate geometry now uses the new list design
7:47 AM Changeset [1826] by Nicklas Nordborg
Fixed bug #17: ItemContext.configureQuery doesn't LEFT JOIN properties …
7:46 AM Ticket #17 (ItemContext.configureQuery doesn't LEFT JOIN properties with more than ...) closed by Nicklas Nordborg
fixed
7:41 AM Changeset [1825] by Nicklas Nordborg
Changed "Scan" to "Hybridization"

Jan 24, 2006:

4:45 PM Ticket #28 (Returning to mainpage from viewing all the news) created by Martin Svensson
It could be useful to have a way to get back to mainpage from the …
4:08 PM Changeset [1824] by Nicklas Nordborg
ItemContext now LEFT JOIN:s filters if it is an association.
3:41 PM Ticket #27 (Analyze button in the experiment view) updated by Gregory Vincic
Type changed
3:40 PM Ticket #27 (Analyze button in the experiment view) created by Gregory Vincic
Add an "Analyze" button to the view experiment toolbar.
3:31 PM Changeset [1823] by Gregory Vincic
Added Run Plugin button which uses the default plugin selection view
2:39 PM Changeset [1822] by Jari Häkkinen
First draft of Server configuration test.
2:38 PM Ticket #26 (Cannot navigate to page 1 on list pages) closed by Nicklas Nordborg
fixed
2:38 PM Changeset [1821] by Nicklas Nordborg
Fixed bug #26: Cannot navigate to page 1 on list pages
2:26 PM Changeset [1820] by Nicklas Nordborg
Array designs and features now use the new list design
1:45 PM Changeset [1819] by Gregory Vincic
Indexed rows and fixed starting level of tree
1:43 PM Changeset [1818] by Gregory Vincic
Indexed rows and fixed starting level of tree
1:28 PM Ticket #25 (Changing information on how to get an account does not propagete to ...) updated by Jari Häkkinen
Description changed
1:25 PM Ticket #26 (Cannot navigate to page 1 on list pages) created by Nicklas Nordborg
If you have navigated to another page than page 1 it is not possible …
1:24 PM Ticket #25 (Changing information on how to get an account does not propagete to ...) created by Jari Häkkinen
Read this tickets short summary. Do the change, logout, try to click …
1:16 PM Ticket #24 (Adding an administrator name with non-US characters looks strange) created by Jari Häkkinen
Try adding "Jari Häkkinen" to the Administrator name in Server setting …
1:13 PM Ticket #23 (Apply button in popup windows?) created by Jari Häkkinen
It would be nice with an apply button in popups that pushes changes …
1:00 PM Ticket #22 (Server configuration. Setting unlimited with G or Gb does not change ...) created by Jari Häkkinen
i) Setting unlimited with G or Gb does not change value when saved. …
12:37 PM Changeset [1817] by Gregory Vincic
Bioassaysets are now represented by a redish folder, should probably …
11:32 AM Ticket #21 (ProgressReporter in IntensityCalculatorUtil methods) created by Nicklas Nordborg
Add a ProgressReporter parameter to …
11:32 AM Changeset [1816] by Gregory Vincic
Renamed treeline images to lowercase
11:30 AM Changeset [1815] by Gregory Vincic
Renamed treeLine to treeline
11:22 AM Changeset [1814] by Gregory Vincic
Added dynamic analysis tree in the analysis view.
11:15 AM Changeset [1813] by Nicklas Nordborg
Changed "Array batch" to new list design
10:30 AM Changeset [1812] by Nicklas Nordborg
Changed "Array slides" to the new design
9:06 AM Changeset [1811] by Nicklas Nordborg
Display annotations on "view item" page
8:46 AM Ticket #20 (Display and link to associated item from view page) created by Nicklas Nordborg
When viewing a single item which has associations to other items, only …
8:43 AM Ticket #19 (Show/hide option for various section on a "view item" page) created by Nicklas Nordborg
When viewing a single item, for example a hybridization, it should be …
8:16 AM Ticket #18 (BioMaterialEvent.addSource and BioMaterialEvent.removeSource doesn't work) created by Nicklas Nordborg
If the "usedQuantity" parameter has been set to null for a source …
7:56 AM Changeset [1810] by Nicklas Nordborg
Fixed NPE in Base.getAndSetCurrentContext if no "rowsperpage" …

Jan 23, 2006:

3:59 PM Changeset [1809] by Nicklas Nordborg
Fixed problem with lists displaying all items if a negative …
3:42 PM Changeset [1808] by Nicklas Nordborg
View hybridization page now lists labeled extracts
2:17 PM Changeset [1807] by Nicklas Nordborg
Added "Today" button to calendar popup.
2:10 PM Changeset [1806] by Nicklas Nordborg
Hybridizations now use the new list design
1:20 PM Ticket #17 (ItemContext.configureQuery doesn't LEFT JOIN properties with more than ...) updated by Nicklas Nordborg
Status, Description changed
The same if true if we have a filter on that property. It will not …
1:03 PM Changeset [1805] by Nicklas Nordborg
Names of days now have three letters
12:16 PM Changeset [1804] by Nicklas Nordborg
Removed debug alert message
11:57 AM Ticket #17 (ItemContext.configureQuery doesn't LEFT JOIN properties with more than ...) created by Nicklas Nordborg
This results in queries which doesn't return any items with null …
11:33 AM Changeset [1803] by Nicklas Nordborg
The new file manager has now fully replace the old one.
8:08 AM Changeset [1802] by Nicklas Nordborg
Fixed vertical alignment of tables

Jan 21, 2006:

1:08 PM Changeset [1801] by Nicklas Nordborg
Removed lots of unused imports.

Jan 20, 2006:

4:08 PM Changeset [1800] by Nicklas Nordborg
Fixed some problems with loading proxies and many-to-any mapping in …
2:42 PM Changeset [1799] by Nicklas Nordborg
TestSpotImages is now displaying spot images (was commented out since …
2:32 PM Changeset [1798] by Nicklas Nordborg
The file manager is now working as a standalone part.
1:32 PM Changeset [1797] by Gregory Vincic
Fixed bug where roles where not assigned due to a closed DbControl
11:12 AM Ticket #13 (Removing experiment while job exists leaves the job waiting indefinitly) closed by Nicklas Nordborg
fixed: Fixed. The error is now reported in the same way as any other job …
11:11 AM Ticket #15 (DemoServer not working even for basic testing) closed by Nicklas Nordborg
duplicate: Fixed some time ago. Shouldn't be a problem once the demo server is …
11:06 AM Changeset [1796] by Nicklas Nordborg
Internal job queue no longer chokes on missing item parameters. …
10:38 AM Ticket #16 (Configurable link to Report a bug) created by Nicklas Nordborg
The help meny has an item "Reporter a bug" which leads to a …

Jan 19, 2006:

8:48 PM Changeset [1795] by Nicklas Nordborg
Removed lots of unused imports.
2:54 PM Changeset [1794] by Nicklas Nordborg
Added File manager with the new list design. The old is still …
2:26 PM Changeset [1793] by Johan Enell
PrintMapFlatFileImporter version1.0
12:11 PM Changeset [1792] by Jari Häkkinen
Inital infrastructure for test documents.

Jan 18, 2006:

5:33 PM Changeset [1791] by Gregory Vincic
Plugin test updated. Analysis gui updated. Changed log4j properties …
4:50 PM Changeset [1790] by Johan Enell
Handles sections correct
3:56 PM Changeset [1789] by Nicklas Nordborg
The current context can now be passed on to plugins when configuring …
2:23 PM Changeset [1788] by Nicklas Nordborg
Changed login page so that the encrypted password is sent in a hidden …
2:04 PM Changeset [1787] by Nicklas Nordborg
Plugins can now use customized JSP pages. Test case with NullPlugin.
1:30 PM Ticket #15 (DemoServer not working even for basic testing) created by base2demo
Seems to be serious serverside problems today 18.01.06. Trying to …
9:33 AM Changeset [1786] by Nicklas Nordborg
Fixed vertical alignment
9:15 AM Ticket #14 (Viewing arrays throws error) closed by Johan Enell
fixed: Changes cast of 'asc desc' to 'ASC DESC'.
9:07 AM Changeset [1785] by Nicklas Nordborg
Fixed vertical alignment of column headers
8:59 AM Changeset [1784] by Nicklas Nordborg
Fixed vertical alignment of messages
8:55 AM Changeset [1783] by Johan Enell
TestJob.test_execute() returns infomation about axit status
8:30 AM Changeset [1782] by Nicklas Nordborg
TestExperiment now cleans up and executes job immediately
8:29 AM Changeset [1781] by Nicklas Nordborg
Reverted NullPlugin to previous state so we can test required parameters

Jan 17, 2006:

5:09 PM Changeset [1780] by Nicklas Nordborg
Fixed bugs in test program related to the updated invokation routines
4:34 PM Changeset [1779] by Nicklas Nordborg
Fixed bugs in test program related to the updated NullPlugin test plugin
1:08 PM Changeset [1778] by Johan Enell
TestAll works again
11:59 AM Changeset [1777] by Nicklas Nordborg
Changed to new design for Software, Hardware, Protocol and Experiment. …

Jan 16, 2006:

4:00 PM Changeset [1776] by Nicklas Nordborg
Fixed validation bug on Edit scan page
3:05 PM Changeset [1775] by Nicklas Nordborg
Changed "View / Scans" to the new page design Made many small changes …
12:51 PM Changeset [1774] by Gregory Vincic
Cleaned up superfluous import statements and unused variables.
12:15 PM Changeset [1773] by Nicklas Nordborg
Several minor changes to import user interface
11:28 AM Changeset [1772] by Nicklas Nordborg
The web import interface should now be more robust and supports …
8:06 AM Changeset [1771] by Nicklas Nordborg
removed update="false" from RawBioAssay.getRawDataType

Jan 13, 2006:

6:16 PM Ticket #14 (Viewing arrays throws error) created by epugh@…
org.jdom.input.JDOMParseException on page …
5:15 PM Changeset [1770] by Gregory Vincic
Errors and commands are now handeled by create_root_bioassayset.jsp …
4:01 PM Changeset [1769] by Nicklas Nordborg
It is now possible to create spot images through the web interface
3:04 PM Changeset [1768] by Gregory Vincic
Intensities are now done with the IntensityCalculatorPlugin
2:47 PM Changeset [1767] by Gregory Vincic
Added IntensityCalculationPlugin test
1:39 PM Changeset [1766] by Nicklas Nordborg
Fixed a bug that caused it to be impossible to create and set …
12:09 PM Changeset [1765] by Nicklas Nordborg
A first version of View / Raw bioassays with the new design is now working
11:42 AM Ticket #13 (Removing experiment while job exists leaves the job waiting indefinitly) created by Gregory Vincic
If you manage to remove an experiment while a waiting job exists the …
11:16 AM Changeset [1764] by Gregory Vincic
Fixed nullPointerException when creating a Job without a …

Jan 12, 2006:

3:12 PM Changeset [1763] by Nicklas Nordborg
Moved the job ID to the ParmeterValues object.
3:00 PM Changeset [1762] by Nicklas Nordborg
The ID of the current job is now available to an executing plugin.
2:51 PM Changeset [1761] by Nicklas Nordborg
Fixed bug in Job that caused it to loose information about which …
2:05 PM Changeset [1760] by Nicklas Nordborg
List page now warns when there are hidden columsn with a filter
12:24 PM Changeset [1759] by Nicklas Nordborg
Plugin configuration now supports item and file parameters
9:36 AM Ticket #12 (Plugin configuration forgets parameter values) created by Nicklas Nordborg
If there is an error in one or more parameters when configuring a …
9:31 AM Changeset [1758] by Nicklas Nordborg
Fixed some of the remaining issues in plugin configuration

Jan 11, 2006:

9:23 PM Tickets #5,​11,​4,​6,​7 batch updated by Jari Häkkinen
Milestone changed
Milestone beta1 deleted
9:23 PM Ticket #1 (column names in flatfile parser) updated by Jari Häkkinen
Milestone changed
9:22 PM Ticket #8 (PrintMapBlockFileImporter) updated by Jari Häkkinen
Milestone changed
9:05 PM Changeset [1757] by Nicklas Nordborg
Replaced the list box with a more fance div-tagged list
3:10 PM Changeset [1756] by Nicklas Nordborg
The start of a new and improved look for configure plugin
2:06 PM Changeset [1755] by Nicklas Nordborg
Error message now doesn't resize a popup window to a smaller size …
1:32 PM Changeset [1754] by Nicklas Nordborg
Plugin configuration can now handle long, float, double, boolean and …

Jan 10, 2006:

8:20 PM Changeset [1753] by Nicklas Nordborg
Updated development status
8:17 PM Changeset [1752] by Nicklas Nordborg
Fixed Internet explorer bug.
8:17 PM Changeset [1751] by Nicklas Nordborg
Bug fix for certain database dialects
3:53 PM Changeset [1750] by Nicklas Nordborg
First step of plugin configuration is now working
9:48 AM Changeset [1749] by Nicklas Nordborg
Manage contexts is now working

Jan 9, 2006:

4:15 PM Changeset [1748] by Gregory Vincic
Added additional requirements specifications
4:12 PM Changeset [1747] by Gregory Vincic
Removing old design and updating status
4:10 PM Changeset [1746] by Gregory Vincic
Added Images and Files section and updated Plates section
4:08 PM Changeset [1745] by Gregory Vincic
Cleaned up comments
4:07 PM Changeset [1744] by Nicklas Nordborg
First prototype for manage contexts
3:38 PM Changeset [1743] by Nicklas Nordborg
PresetSelector should not show "Owned by others" option for …
1:57 PM Changeset [1742] by Nicklas Nordborg
Added prototype analysis
1:17 PM Changeset [1741] by Nicklas Nordborg
Alpha 6 was release 2005-12-21 not 2005-09-09
1:13 PM Changeset [1740] by Nicklas Nordborg
Fixed bug that made it impossible to view other pages but the first in …
1:00 PM Changeset [1739] by Nicklas Nordborg
Added "Edit" images
12:12 PM Changeset [1738] by Nicklas Nordborg
View / Reporters should now be more or less functional

Jan 4, 2006:

10:16 AM Changeset [1737] by Gregory Vincic
Added a sequence diagram describing a general transfer

Jan 3, 2006:

4:59 PM Changeset [1736] by Gregory Vincic
Added operations to most top classes
4:24 PM Changeset [1735] by Gregory Vincic
Initial revision of umbrello design
Note: See TracTimeline for information about the timeline view.