Opened 16 years ago
Last modified 16 years ago
#939 closed defect
BioAssaySetExporter doesn't export BASEfiles for multiple array designs correctly — at Initial Version
| Reported by: | base | Owned by: | everyone |
|---|---|---|---|
| Priority: | minor | Milestone: | BASE 2.6.1 |
| Component: | coreplugins | Version: | |
| Keywords: | Cc: |
Description
I am finding problems with BASEfile export, averaged over reporter or not. It's something to do with the select "_position" in the spot data query I think. But I do not have a patch for this problem.
I will try to attach a gzipped BASE file (averaged over reporter, made by the base1pluginexecutor for hierarchical clustering) where you can see the main chunk of 19,388 averaged reporters (I think the data is correct) and then all the other reporters again (several times). The file should only have around 20k lines.
When I filter the bioassayset to include just one array design, it works fine.
Analysis of this multi-array design expt has been working fine in BASE. We have a 4k array and a 20k array (all 4k reporters are on the 20k array). I'll assign it minor priority because we only have one expt like this!
More details gladly supplied.
Bob MacCallum.
