Opened 17 years ago

Last modified 16 years ago

#639 closed task

exportPureMatrix method — at Version 12

Reported by: Peter Johansson Owned by: Jari Häkkinen
Priority: minor Milestone: BASE 2.7.1
Component: coreplugins Version: 2.7
Keywords: Cc:

Description (last modified by Jari Häkkinen)

It would be useful to have a method exporting a BioAssaySet to pure matrix, in other words, a matrix with no additional header or reporter information. Each column in the matrix corresponds to a sample, and each row corresponds to a reporter.

Passed arguments may be a BioAssaySet (of course) and something holding the information what variable should be exported (e.g. ch1, ch2 or log2ratio).

Change History (12)

comment:1 by Peter Johansson, 17 years ago

Status: newassigned

comment:2 by Peter Johansson, 17 years ago

(In [3509]) References #639. First non-tested non-generic version of the matrix export method.

comment:3 by Peter Johansson, 17 years ago

(In [3645]) refs #639 stupid version of exportPureMatrix method that simply exports channel 1.

comment:4 by Peter Johansson, 17 years ago

(In [3648]) refs #639 removing the exportPlainMatrix method.

comment:5 by Peter Johansson, 17 years ago

Milestone: BASE 2.4BASE 2.5

The interface of this method is not mature enough to be included in the 2.4 release.

comment:6 by Peter Johansson, 17 years ago

(In [3705]) refs #639

comment:7 by Jari Häkkinen, 16 years ago

Milestone: BASE 2.5BASE 2.x+
Owner: Peter Johansson removed
Status: assignednew

comment:8 by Johan Enell, 16 years ago

Milestone: BASE 2.x+BASE 2.6

comment:9 by Nicklas Nordborg, 16 years ago

Priority: majorminor

comment:10 by Nicklas Nordborg, 16 years ago

Milestone: BASE 2.6BASE 2.x+

This ticket will remain at 2.x unless a proper specification is made.

comment:11 by Jari Häkkinen, 16 years ago

Milestone: BASE 2.x+BASE 2.7.1
Owner: set to Jari Häkkinen
Status: newassigned
Version: trunk2.7

comment:12 by Jari Häkkinen, 16 years ago

Description: modified (diff)

Just a note to tell you all that I am working on this now.

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