Changes between Initial Version and Version 14 of Ticket #294

Oct 9, 2007, 8:55:33 AM (15 years ago)
Nicklas Nordborg

Johan V-C has done some interesting test with the following plug-ins:

  • Create root bioassayset. The same 55K raw data set has been used for 10-40 bioassays. Median FG - Median BG was used for intensity values
  • Jep filter plugin: ch(1) > 0 && ch(2) > 0 && raw('flag') == 0
  • Lowess plugin: step=0.1, window size=0.33, iterations=4, blockgroup size=1

Corresponding tests were done on the BASE 1 server. The results show that BASE 1 execution time is linear with respect to the number of bioassays. With BASE 2 only the filter plug-in is linear but takes about 3 times longer. The other plug-ins seems to have a random execution time that is 20-50 times longer than in BASE 1.


  • Ticket #294

    • Property Status changed from new to assigned
    • Property Summary changed from Plugin-in execution time to Performance testing: Plugin-in execution time
    • Property Priority changed from major to blocker
    • Property Milestone changed from BASE 2.x+ to BASE 2.5
    • Property Owner changed from base to Nicklas Nordborg