Opened 13 years ago

Last modified 13 years ago

#1246 closed defect

Annotation importer refuses to skip bad lines — at Initial Version

Reported by: Jari Häkkinen Owned by: everyone
Priority: major Milestone: BASE 2.10.1
Component: coreplugins Version: 2.10
Keywords: Cc:

Description

I have a file (attached) that refuses to import. All lines with valid data is accepted by the importer but line 12 with obvious errors creates the below error. That is fine with me, the error occurs beyond my data, so I set default error handling to skip. Even with skip I get the burp below. Is there a problem with the importer?

net.sf.basedb.core.BaseException: Invalid use of null. The 'value' value cannot be set to null. on line 12 in file 'Labeledextract.txt': C02 ...
at net.sf.basedb.plugins.AbstractFlatFileImporter.doImport(AbstractFlatFileImporter.java:731)
at net.sf.basedb.plugins.AbstractFlatFileImporter.run(AbstractFlatFileImporter.java:468)
at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:106)
at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:504)
at java.lang.Thread.run(Thread.java:619)
Caused by: net.sf.basedb.core.InvalidUseOfNullException: Invalid use of null. The 'value' value cannot be set to null.
at net.sf.basedb.core.AbstractQuery.setParameter(AbstractQuery.java:351)
at net.sf.basedb.core.AbstractQuery.setParameter(AbstractQuery.java:366)
at net.sf.basedb.core.ItemQuery.setParameter(ItemQuery.java:40)
at net.sf.basedb.plugins.AnnotationFlatFileImporter.handleData(AnnotationFlatFileImporter.java:750)
at net.sf.basedb.plugins.AbstractFlatFileImporter.doImport(AbstractFlatFileImporter.java:699)
... 4 more

Change History (1)

Changed 13 years ago by Jari Häkkinen

Attachment: Labeledextract.txt added

Sample file to import annotation to lableled extracts

Note: See TracTickets for help on using tickets.