Tests was done on a dedicated performance test machine (grey). 
Results should not be compared to results made on other computers.

The test was made on a fresh installation of BASE 2.11 on 
MySQL 5.0.51a which was initialised with 1000 raw data sets 
following the instructions in
http://base.thep.lu.se/wiki/Specifications/Test_procedures/Performance
Eg. './test.sh performance -i 1000 raw'

The following tests were made from the web interface. The 
main purpose of the tests are to keep the result as a reference 
to make sure that any improvements we can do in the 
BioAssaySetExporter doesn't affect other things.

# = Number of assays
T1 = First run
T2 = Second run

Create root bioassay set
========================
formula: Mean FG - Median BG

# 	T1	T2
--------------------
10	0.41	0.20
20	1.10	1.17
40	3.57	2.44
80	6.045	7.33
160	18.42	13.39
320	31.45	36.57
640	71.07	78.37


Filter bioassay set
===================
formula: ch(1) > 0 && ch(2) > 0

#	T1	T2
--------------------
10	0.31	0.26
20	0.46	0.41
40	1.27	1.17
80	1.42	2.39
160	4.41	5.10
320	12.55	12.18
640	23.45	25.05

Lowess normalization
====================
all parameters at default values

#	T1	T2
--------------------
10	2.42	1.49
20	3.16	2.57
40	5.15	4.55
80	13.41	14.17
160	32.16	25.01
320	59.55	52.20