Class SecondPassSectionSpotsParser

java.lang.Object
net.sf.basedb.util.importer.spotdata.SecondPassSectionSpotsParser
All Implemented Interfaces:
BaseFileSectionParser

public class SecondPassSectionSpotsParser
extends Object
implements BaseFileSectionParser
The second pass of the 'spots' section extracts spot and extra value data.
Version:
2.14
Author:
Nicklas
Last modified
$Date: 2019-03-20 14:31:03 +0100 (ons, 20 mars 2019) $
  • Field Details

    • dc

      private final DbControl dc
    • info

      private final BaseFileInfo info
    • child

      private final BioAssaySet child
    • linesToParse

      private final int linesToParse
    • progressReportInterval

      private final int progressReportInterval
    • nextProgressReport

      private int nextProgressReport
    • channels

      private final int channels
    • sectionCount

      private int sectionCount
  • Constructor Details

    • SecondPassSectionSpotsParser

      public SecondPassSectionSpotsParser​(DbControl dc, BaseFileInfo info, BioAssaySet child, int linesToParse)
      Creates a new 'section spot' parser for the first pass. This parser will only extract header and reporter/position mapping information.
      Parameters:
      dc - A DbControl to use for database access
      info - Information about the file we are parsing
      child - The new child bioassay set that we are importing data to
  • Method Details