Class ExperimentExplorer.AnnotationSummary

java.lang.Object
net.sf.basedb.clients.web.ExperimentExplorer.AnnotationSummary
Enclosing class:
ExperimentExplorer

public static class ExperimentExplorer.AnnotationSummary extends Object
An annotation summary object keeps track of intensities and other statistical information based on the annotation group.
Version:
2.0
Author:
nicklas
Last modified
$Date: 2021-06-03 13:47:50 +0200 (Thu, 03 Jun 2021) $
  • Field Details

  • Constructor Details

  • Method Details

    • getAnnotationType

      public AnnotationType getAnnotationType()
      Get the annotation type this summary is based on.
      Since:
      2.14
    • getAnnotationGroup

      public ExperimentExplorer.AnnotationGroup getAnnotationGroup(short column)
      Get the annotation group for the bioassay with the give data cube column.
      Parameters:
      column - The data cube column of an bioassay
      Returns:
      An AnnotationGroup object, or null if none is found
    • getAnnotationGroups

      public Set<ExperimentExplorer.AnnotationGroup> getAnnotationGroups()
      Get all annotation groups that was found among the bioassays.
      Returns:
      The annotations groups.
    • reset

      public void reset()
      Reset the collected statistics in all annotation groups.
      Since:
      2.14
    • setColorsAuto

      public void setColorsAuto()
      Arranges the colors of the groups in the order they are returned by the getAnnotationGroups() set.
      Since:
      2.14