Package net.sf.basedb.clients.web
Class ExperimentExplorer.AnnotationSummary
java.lang.Object
net.sf.basedb.clients.web.ExperimentExplorer.AnnotationSummary
- Enclosing class:
- ExperimentExplorer
An annotation summary object keeps track of intensities and other
statistical information based on the annotation group.
- Version:
- 2.0
- Author:
- nicklas
- Last modified
- $Date: 2021-06-03 13:47:50 +0200 (Thu, 03 Jun 2021) $
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Field Summary
Modifier and TypeFieldDescriptionprivate final AnnotationType
private final Map<Short,
ExperimentExplorer.AnnotationGroup> private final ExperimentExplorer
private final Set<ExperimentExplorer.AnnotationGroup>
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Constructor Summary
ModifierConstructorDescriptionprivate
AnnotationSummary
(ExperimentExplorer explorer, DbControl dc, AnnotationType annotationType) -
Method Summary
Modifier and TypeMethodDescriptiongetAnnotationGroup
(short column) Get the annotation group for the bioassay with the give data cube column.Get all annotation groups that was found among the bioassays.Get the annotation type this summary is based on.void
reset()
Reset the collected statistics in all annotation groups.void
Arranges the colors of the groups in the order they are returned by thegetAnnotationGroups()
set.
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Field Details
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explorer
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assayGroups
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groups
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annotationType
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Constructor Details
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AnnotationSummary
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Method Details
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getAnnotationType
Get the annotation type this summary is based on.- Since:
- 2.14
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getAnnotationGroup
Get the annotation group for the bioassay with the give data cube column.- Parameters:
column
- The data cube column of an bioassay- Returns:
- An AnnotationGroup object, or null if none is found
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getAnnotationGroups
Get all annotation groups that was found among the bioassays.- Returns:
- The annotations groups.
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reset
public void reset()Reset the collected statistics in all annotation groups.- Since:
- 2.14
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setColorsAuto
public void setColorsAuto()Arranges the colors of the groups in the order they are returned by thegetAnnotationGroups()
set.- Since:
- 2.14
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