This appendix covers all menu items in BASE, including submenus. You should use it as a map to easily find your way through the menus. Some menu items are referring to other section of the documentation, that holds more information. The list of menu items is organized after three different types,
Settings | ||
---|---|---|
Configure | Menu choice | Comment |
Appearance of web client | → | Section 6.2.4, “Preferences” |
Contact information (your own) | → | Section 6.2.1, “Contact information” |
Most recently used items | The tab Most recent under → | the section called “The Recent items tab” |
Other information (your own) | → | Useful information about yourself. |
Password (your own) | → | Section 6.2.3, “Changing password” |
Plugin messages | The tab Plugins under → | the section called “The Plugins tab” |
Server settings | → | Currently no documentation. |
Miscellaneous | ||
---|---|---|
Action | Menu choice | Comment |
About the program | → | Useful information about the program. |
BASE project information | → | The home page of the BASE project |
Disk usage overview | → | Disk usage of users, groups etc. Currently no other documentation. |
Exit from the program | → | You are logged out and redirected to the login page. |
License information | → | The GNU GPL (General Public License) |
Load your current permissions | → | This updates the logged in user's permissions. See Section 7.1, “The permission system” |
Report program defects | → | This is where you should turn if there are any defects in the program |
Restart server/program | → | Restarts the program. Requires everyone, that were logged in, to identify themselves again with username and password. |
Items (A-H, I-P, Q-Z) | |||
---|---|---|---|
Want to view… | Menu path | Comment | |
A-H | All items own by yourself | → | Gives a complete overview of all your items. |
Annotation types | → → | Chapter 11, Annotations | |
Array batches | → | Chapter 16, Array LIMS | |
Array designs | → | Chapter 16, Array LIMS | |
Array slides | → | Chapter 16, Array LIMS | |
Biosources | → | Chapter 17, Biomaterials | |
Categories of annotation types | → → | Chapter 11, Annotations | |
Clients | → | ||
Data file types | → → | Section 12.2, “Data file types” | |
Experimental platforms | → → | Section 12.1, “Platforms” | |
Experiments | → | Section 18.3, “Experiments” | |
Extra value types | → → | ||
Extracts | → | Chapter 17, Biomaterials | |
Files and directories | → | Chapter 8, File management | |
File types | → → | Section 8.3, “File types” | |
Formulas | → | ||
Groups | → | Section 24.2, “Groups administration” | |
Hardware | → | Chapter 14, Hardware | |
Hardware types | → → | ||
Helptexts | Helptext tab when viewing a client. | → , use the||
Hybridizations | → | Chapter 17, Biomaterials | |
I-P | Jobs | → | |
Labeled extracts | → | Chapter 17, Biomaterials | |
Labels | → | ||
MIME types | → → | ||
Messages | → | ||
News | → | ||
Plates | → | Chapter 16, Array LIMS | |
Plate geometries | → | Chapter 16, Array LIMS | |
Plate mappings | → | Chapter 16, Array LIMS | |
Plate types | → | Chapter 16, Array LIMS | |
Plugins | → → | Chapter 22, Plug-ins | |
Plugin configurations | → → | Section 22.4, “Plug-in configurations” | |
Plugin types | → → | Chapter 22, Plug-ins | |
Projects | → | Chapter 7, Projects and the permission system | |
Protocols | → | ||
Protocol types | → → | ||
Q-Z | Quota | → | |
Quota types | → → | Section 24.4, “Disk space/quota” | |
Raw bioassays | → | Section 18.2, “Raw bioassays” | |
Removed items | → | Section 6.5, “Trashcan” | |
Reporter lists | → | ||
Reporter types | → → | ||
Reporters | → | ||
Samples | → | ||
Scans | → | Section 18.1, “Scans and images” | |
Sessions | → | ||
Software | → | Chapter 15, Software | |
Software types | → → | ||
Users | → | Chapter 24, Account administration |