2.14.1: 2009-11-05

Package net.sf.basedb.util.importer.spotdata

Interface Summary
SpotIntensityParser A spot intensity parser is responsible for parsing and extracting spot intensity data on a row-by-row basis from a BASEfile.
 

Class Summary
BaseFileImporter Imports spot data from a serial or matrix BASEfile.
BaseFileImporter.RawDataProxy  
BaseFileImporter.ReporterProxy  
BaseFileInfo Collects information about a BASEfile as it gets parsed by a BaseFileImporter.
BaseFileInfo.ChildBioAssay Keeps information about a new child bioassay from the 'assays' section or 'spot' sections.
BaseFileInfo.SpotSectionInfo Keeps information about headers and more in a 'spot' section.
ExtraFloatParser Parser that is responsible for extracting extra float values from the 'spot' section in a BASEfile.
FirstPassSectionSpotsParser Parses a 'spots' section of a BASEfile with bioassay set spot data.
GenericIntensityParser Generic spot intensity parser implementation that looks for 'intensity1', ..., 'intensityN' data columns for any number of channels.
MAParser Spot intensity parser implementation for 2-channel data that looks for M/A values in the spot data and converts them to ch1/ch2 intensity values.
SecondPassSectionSpotsParser The second pass of the 'spots' section extracts spot and extra value data.
SectionAssaysParser Parses the 'assays' section of a BASEfile with bioassay set spot data.
SectionReporterListParser Parses the 'reporterlist' section of a BASEfile.
 


2.14.1: 2009-11-05