net.sf.basedb.util.biomaterial.ListUtil.addToList(ItemList, Collection extends S>, CollectionTransformer)
In 3.5, no replacement
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net.sf.basedb.core.query.Annotations.between(String, AnnotationType, Object, Object, boolean)
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net.sf.basedb.core.ItemContext.configureQuery(DbControl, AbstractSqlQuery, List)
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net.sf.basedb.core.hibernate.StatelessSessionWrapper.connection() |
net.sf.basedb.util.biomaterial.ListUtil.createTransformer(DbControl, Item, Item, boolean)
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net.sf.basedb.core.query.Annotations.eq(String, AnnotationType, Object, boolean)
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net.sf.basedb.core.hibernate.SessionWrapper.get(Class, Serializable, LockMode) |
net.sf.basedb.core.hibernate.SessionWrapper.get(String, Serializable, LockMode) |
net.sf.basedb.core.Application.getAuthenticator()
In 3.3, no replacement
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net.sf.basedb.core.VirtualTable.getBytesPerRow(RawDataType)
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net.sf.basedb.core.VirtualTable.getColumns(RawDataType)
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net.sf.basedb.util.overview.ValidationOptions.getOption(Validator, String, String)
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net.sf.basedb.core.DerivedBioAssay.getParent()
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net.sf.basedb.core.DerivedBioAssay.getPhysicalBioAssay()
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net.sf.basedb.util.biomaterial.ListUtil.getQuery(Item)
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net.sf.basedb.util.overview.ValidationOptions.getSeverity(Validator)
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net.sf.basedb.util.overview.OverviewUtil.getValidators()
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net.sf.basedb.core.query.Annotations.gt(String, AnnotationType, Object, boolean)
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net.sf.basedb.core.query.Annotations.gteq(String, AnnotationType, Object, boolean)
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net.sf.basedb.core.query.Annotations.in(String, AnnotationType, boolean, Object...)
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net.sf.basedb.core.Application.isUsingInternalAuthentication()
In 3.3, no replacement
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net.sf.basedb.core.query.Annotations.like(String, AnnotationType, Object, boolean)
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net.sf.basedb.core.hibernate.SessionWrapper.load(Class, Serializable, LockMode) |
net.sf.basedb.core.hibernate.SessionWrapper.load(String, Serializable, LockMode) |
net.sf.basedb.core.hibernate.SessionWrapper.lock(Object, LockMode) |
net.sf.basedb.core.hibernate.SessionWrapper.lock(String, Object, LockMode) |
net.sf.basedb.core.SessionControl.login(String, String, String)
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net.sf.basedb.core.PluginSessionControl.login(String, String, String) |
net.sf.basedb.core.query.Annotations.lt(String, AnnotationType, Object, boolean)
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net.sf.basedb.core.query.Annotations.lteq(String, AnnotationType, Object, boolean)
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net.sf.basedb.core.query.Annotations.neq(String, AnnotationType, Object, boolean)
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net.sf.basedb.core.hibernate.SessionWrapper.refresh(Object, LockMode) |
net.sf.basedb.util.extensions.Registry.registerExtension(Extension)
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net.sf.basedb.util.extensions.Registry.registerExtensionPoint(ExtensionPoint)
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net.sf.basedb.util.extensions.manager.processor.ExtractResourcesProcessor.setForceOverwrite(boolean)
In 3.1, no replacement since all files must be overwritten to ensure
proper functionality
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net.sf.basedb.util.overview.ValidationOptions.setOption(Validator, String, String)
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net.sf.basedb.util.overview.ValidationOptions.setSeverity(Validator, Severity)
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net.sf.basedb.core.log.EntityDetails.toChangeHistoryDetailData(BasicData, ChangeType, boolean)
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net.sf.basedb.core.log.EntityDetails.toChangeHistoryDetailData(boolean)
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net.sf.basedb.util.JarClassLoader.unload(String)
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