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java.lang.Objectnet.sf.basedb.core.data.BasicData
net.sf.basedb.core.data.BioAssayData
public class BioAssayData
This class holds information about a bioassay.
BioAssay
,
Developer documentation: Experiments and analysisField Summary | |
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private AnnotationSetData |
annotationSet
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private BioAssaySetData |
bioAssaySet
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private Set<BioAssayData> |
children
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private DataCubeColumnData |
dataCubeColumn
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private String |
description
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private String |
name
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private int |
numFileSpots
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private int |
numSpots
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private Set<BioAssayData> |
parents
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private Set<RawBioAssayData> |
rawParents
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Fields inherited from interface net.sf.basedb.core.data.NameableData |
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MAX_DESCRIPTION_LENGTH, MAX_NAME_LENGTH |
Constructor Summary | |
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BioAssayData()
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Method Summary | |
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Set<AnnotationLink> |
getAnnotations()
Short-cut to all annotations belonging to this item. |
AnnotationSetData |
getAnnotationSet()
Get the annotation set that holds the annotations for an item. |
BioAssaySetData |
getBioAssaySet()
Get the bioassayset this bioassay belongs to. |
(package private) Set<BioAssayData> |
getChildren()
This is the inverse end to getParents() . |
DataCubeColumnData |
getDataCubeColumn()
Get the column this bioassay stores it's data in. |
String |
getDescription()
Get the description for the item. |
String |
getName()
Get the name of the item. |
int |
getNumFileSpots()
The number of unique spots in this bioassayset. |
int |
getNumSpots()
The number of unique spots in this bioassay. |
Set<BioAssayData> |
getParents()
Get a set that manages the parent bioassays the data in this bioassay is based on. |
Set<RawBioAssayData> |
getRawParents()
Get a set that manages the raw parent bioassays the data in this bioassay is based on. |
(package private) void |
setAnnotations(Set<AnnotationLink> annotations)
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void |
setAnnotationSet(AnnotationSetData annotationSet)
Change the annotation set. |
void |
setBioAssaySet(BioAssaySetData bioAssaySet)
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(package private) void |
setChildren(Set<BioAssayData> children)
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void |
setDataCubeColumn(DataCubeColumnData dataCubeColumn)
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void |
setDescription(String description)
Set the description for the item. |
void |
setName(String name)
Set the name of the item. |
void |
setNumFileSpots(int numFileSpots)
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void |
setNumSpots(int numSpots)
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(package private) void |
setParents(Set<BioAssayData> parents)
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(package private) void |
setRawParents(Set<RawBioAssayData> rawParents)
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Methods inherited from class net.sf.basedb.core.data.BasicData |
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equals, getId, getVersion, hashCode, setId, setVersion, toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, notify, notifyAll, wait, wait, wait |
Methods inherited from interface net.sf.basedb.core.data.IdentifiableData |
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getId, getVersion |
Field Detail |
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private String name
private String description
private AnnotationSetData annotationSet
private BioAssaySetData bioAssaySet
private DataCubeColumnData dataCubeColumn
private int numSpots
private int numFileSpots
private Set<BioAssayData> parents
private Set<BioAssayData> children
private Set<RawBioAssayData> rawParents
Constructor Detail |
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public BioAssayData()
Method Detail |
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public String getName()
NameableData
getName
in interface NameableData
String
with the name of the itempublic void setName(String name)
NameableData
MAX_NAME_LENGTH
constant.
setName
in interface NameableData
name
- The new name for the itempublic String getDescription()
NameableData
getDescription
in interface NameableData
String
with a description of the itempublic void setDescription(String description)
NameableData
MAX_DESCRIPTION_LENGTH
constant.
setDescription
in interface NameableData
description
- The new description for the itempublic AnnotationSetData getAnnotationSet()
AnnotatableData
getAnnotationSet
in interface AnnotatableData
AnnotationSetData
item or null if no annotations existpublic void setAnnotationSet(AnnotationSetData annotationSet)
AnnotatableData
setAnnotationSet
in interface AnnotatableData
annotationSet
- Annotation set to change to.public Set<AnnotationLink> getAnnotations()
AnnotatableData
getAnnotations
in interface AnnotatableData
void setAnnotations(Set<AnnotationLink> annotations)
public BioAssaySetData getBioAssaySet()
public void setBioAssaySet(BioAssaySetData bioAssaySet)
public DataCubeColumnData getDataCubeColumn()
public void setDataCubeColumn(DataCubeColumnData dataCubeColumn)
public int getNumSpots()
public void setNumSpots(int numSpots)
public int getNumFileSpots()
public void setNumFileSpots(int numFileSpots)
public Set<BioAssayData> getParents()
void setParents(Set<BioAssayData> parents)
Set<BioAssayData> getChildren()
getParents()
.
void setChildren(Set<BioAssayData> children)
public Set<RawBioAssayData> getRawParents()
void setRawParents(Set<RawBioAssayData> rawParents)
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3.2.1: 2012-12-13 | ||||||||
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SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |