Class SectionAssaysParser

  • All Implemented Interfaces:
    BaseFileSectionParser

    public class SectionAssaysParser
    extends Object
    implements BaseFileSectionParser
    Parses the 'assays' section of a BASEfile with bioassay set spot data. This section is optional, but if it exists, it must define 'id' and 'name' columns of child bioassays. The 'id' must be the same as the id of a parent bioassay unless a 'parents' column is present. One or more parents can be given for each child. Separate the values with a /.

    NOTE! The column names can be redefined by calling BaseFileParser.setRedefinedColumnName(String, String, String)

    section assays
    columns id\tname\tparents
    count   2
    %
    100     The first child 1/2/3
    101     The second child        4/5/6
    
    Version:
    2.14
    Author:
    Nicklas
    Last modified
    $Date: 2019-03-20 14:31:03 +0100 (ons, 20 mars 2019) $
    • Constructor Detail

      • SectionAssaysParser

        public SectionAssaysParser​(DbControl dc,
                                   BaseFileInfo info)
        Creates a new 'section assays' parser.
        Parameters:
        dc - The DbControl to use for database access
        info - Information collector for the file we are parsing