Class SecondPassSectionSpotsParser

  • All Implemented Interfaces:
    BaseFileSectionParser

    public class SecondPassSectionSpotsParser
    extends Object
    implements BaseFileSectionParser
    The second pass of the 'spots' section extracts spot and extra value data.
    Version:
    2.14
    Author:
    Nicklas
    Last modified
    $Date: 2019-03-20 14:31:03 +0100 (ons, 20 mars 2019) $
    • Field Detail

      • linesToParse

        private final int linesToParse
      • progressReportInterval

        private final int progressReportInterval
      • nextProgressReport

        private int nextProgressReport
      • channels

        private final int channels
      • sectionCount

        private int sectionCount
    • Constructor Detail

      • SecondPassSectionSpotsParser

        public SecondPassSectionSpotsParser​(DbControl dc,
                                            BaseFileInfo info,
                                            BioAssaySet child,
                                            int linesToParse)
        Creates a new 'section spot' parser for the first pass. This parser will only extract header and reporter/position mapping information.
        Parameters:
        dc - A DbControl to use for database access
        info - Information about the file we are parsing
        child - The new child bioassay set that we are importing data to