Class DataFileType

    • Field Detail

      • AFFYMETRIX_CDF

        public static final String AFFYMETRIX_CDF
        The external ID for the file type representing Affymetrix CDF files.
        See Also:
        Constant Field Values
      • AFFYMETRIX_CEL

        public static final String AFFYMETRIX_CEL
        The external ID for the file type representing Affymetrix CEL files.
        See Also:
        Constant Field Values
      • GENERIC_RAW_DATA

        public static final String GENERIC_RAW_DATA
        The external ID for the file type representing a generic raw data file of any type.
        See Also:
        Constant Field Values
      • GENERIC_REPORTER_MAP

        public static final String GENERIC_REPORTER_MAP
        The external ID for the file type representing a generic reporter map (array design layout) of any type.
        See Also:
        Constant Field Values
      • GENERIC_PRINT_MAP

        public static final String GENERIC_PRINT_MAP
        The external ID for the file type representing a generic print map (array design layout) of any type.
        See Also:
        Constant Field Values
      • GENERIC_SPOT_DATA

        public static final String GENERIC_SPOT_DATA
        The external ID for the file type representing generic analysed spot data.
        Since:
        2.8
        See Also:
        Constant Field Values
      • GENERIC_EXTRAVALUE_DATA

        public static final String GENERIC_EXTRAVALUE_DATA
        The external ID for the file type representing generic analysed extra value data.
        Since:
        2.8
        See Also:
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      • BASEFILE_SERIAL

        public static final String BASEFILE_SERIAL
        The external ID for the file type representing a serial BASEFile.
        Since:
        2.11
        See Also:
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      • BASEFILE_MATRIX

        public static final String BASEFILE_MATRIX
        The external ID for the file type representing a matrix BASEFile.
        Since:
        2.11
        See Also:
        Constant Field Values
      • BFS_METADATA

        public static final String BFS_METADATA
        The external ID for the file type representing a BFS metadata file. The metadata file may reference additional files.
        Since:
        2.15
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        Constant Field Values
      • MEV_TDMS

        public static final String MEV_TDMS
        The external ID for the file type representing a MeV TDMS (Tab-Delimited Multiple Sample) file.
        Since:
        2.11
        See Also:
        Constant Field Values
      • SAM

        public static final String SAM
        The external ID for the file type representing a SAM (Sequence Alignment/Map) file.
        Since:
        3.0
        See Also:
        Constant Field Values
      • BAM

        public static final String BAM
        The external ID for the file type representing a BAM (Binary Sequence Alignment/Map) file.
        Since:
        3.0
        See Also:
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      • MICROARRAY_IMAGE

        public static final String MICROARRAY_IMAGE
        The external ID for the file type representing scanned microarray image.
        Since:
        3.0
        See Also:
        Constant Field Values
      • REF_SEQ_GTF

        public static final String REF_SEQ_GTF
        The external ID for the file type representing a GTF reference file that define the features on an array design that we are interested in.
        Since:
        3.0
        See Also:
        Constant Field Values
      • FPKM_TRACKING

        public static final String FPKM_TRACKING
        The external ID for the file type representing a FPKM tracking file. http://cufflinks.cbcb.umd.edu/manual.html#tracking_format
        Since:
        3.0
        See Also:
        Constant Field Values
    • Constructor Detail

      • DataFileType

        DataFileType​(DataFileTypeData data)
        Creates a new filetype item from the given data.
        Parameters:
        data - the data.