- About
- AboutBean
- AboutImpl
- AbsConverter
- AbsExpression
- AbsoluteProgressReporter
- AbstractAnalysisPlugin
- AbstractBatcher
- AbstractBioAssaySetExporter
- AbstractCustomRequestHandler
- AbstractDataWriterFactory
- AbstractDbEngine
- AbstractEntityQuery
- AbstractExporterPlugin
- AbstractFieldConverter
- AbstractFilenameGenerator
- AbstractFileUnpacker
- AbstractFlatFileImporter
- AbstractHqlQuery
- AbstractIOSupport
- AbstractItemImporter
- AbstractJepConversionFunction
- AbstractJspActionFactory
- AbstractJspFactory
- AbstractJspRendererFactory
- AbstractListColumnBean
- AbstractNodeLoader
- AbstractOnSaveAction
- AbstractPlugin
- AbstractQuery
- AbstractQueryCache
- AbstractResultList
- AbstractResultWriter
- AbstractSignalHandler
- AbstractSignalReceiver
- AbstractSignalTransporter
- AbstractSourceItemTransformer
- AbstractSourceItemTransformerFactory
- AbstractSqlQuery
- Accept
- AccessControlled
- AccountExpiredException
- Action
- ActionClassEventFilter
- ActionFactory
- ActionIterator
- AdaptiveNumberFormatter
- AddAllTransformer
- AddConverter
- AddExpression
- AdvancedFieldConverter
- AffymetrixUtil
- Agent
- AgentController
- AgentSignalReceiver
- Aggregations
- AllEventsFilter
- AllOfFilter
- AllowAnyHostNameVerifyer
- AlreadyLoggedInException
- AnalysisFilterPlugin
- AndConverter
- AndRestriction
- Annotatable
- AnnotatableData
- AnnotatableProxy
- AnnotatedData
- AnnotatedItem
- Annotation
- Annotation.QueryRuntimeFilterImpl
- Annotation.Source
- AnnotationAssayField
- AnnotationBatcher
- AnnotationBatcher.Change
- AnnotationBatcher.CurrentAnnotationInfo
- AnnotationBatcher.InsertBatcher
- AnnotationBatcher.UpdateBatcher
- AnnotationBetweenRestriction
- AnnotationData
- AnnotationExpression
- AnnotationFilter
- AnnotationFlatFileImporter
- AnnotationFlatFileImporter.AnnotationValue
- AnnotationFlatFileImporter.NewAnnotations
- AnnotationIdMethod
- AnnotationInRestriction
- AnnotationJoin
- AnnotationLink
- AnnotationLoader
- AnnotationLoaderUtil
- AnnotationLogger
- AnnotationModel
- AnnotationNameGenerator
- AnnotationParser
- AnnotationRestriction
- AnnotationRestriction.Options
- Annotations
- AnnotationSet
- AnnotationSet.ProjectSpecificAnnotationsRestriction
- AnnotationSet.QueryRuntimeFilterImpl
- AnnotationSetData
- AnnotationSetLogger
- AnnotationSetSnapshot
- AnnotationSetSnapshot.SortByProjectComparator
- AnnotationSetterPlugin
- AnnotationSimpleRestriction
- AnnotationSnapshot
- AnnotationSnapshot.AnnotationTypeComparator
- AnnotationType
- AnnotationType.RemoveInheritedAnnotationsAction
- AnnotationTypeCategory
- AnnotationTypeCategoryData
- AnnotationTypeData
- AnnotationTypeEnumerationLoader
- AnnotationTypeFilter
- AnnotationTypeImporter
- AnnotationTypeItemTypesLoader
- AnnotationUtil
- AnnotationUtil
- AnnotationUtil.AnnotatableWrapper
- AnnotationUtil.Cache
- AnnotationValidator
- AnnotationWriter
- AnyToAny
- AnyToAnyData
- AnyToAnyDataLoader
- AnyToAnyLoader
- AnyToAnyLogger
- AnyToAnyNameGenerator
- AnyToAnyRestriction
- AnyToAnyValidator
- Application
- Application.DbCleaner
- Application.Pinger
- Application.SessionControlCacheCleaner
- ArrayBatch
- ArrayBatchData
- ArrayBatchImporter
- ArrayBatchLoader
- ArrayBatchValidator
- ArrayDesign
- ArrayDesignBlock
- ArrayDesignBlockData
- ArrayDesignData
- ArrayDesignImporter
- ArrayDesignLoader
- ArrayDesignPlate
- ArrayDesignPlateData
- ArrayDesignValidator
- ArrayIterator
- ArraySlide
- ArraySlideData
- ArraySlideImporter
- ArraySlideLoader
- ArraySlideValidator
- AscOrder
- AssayField
- AssayPropertyField
- ASTConstantConverter
- ASTFunNodeConverter
- ASTVarNodeConverter
- AuthenticatedUser
- AuthenticationContext
- AuthenticationException
- AuthenticationManager
- AuthenticationMethod
- AutoChildNodeLoader
- AutoDetectFileFormat
- AutoDetectFileFormat.IsImportableFilter
- AutoDetectingImporter
- AutoFormatter
- AutoJoiner
- Base
- Base1FieldConverter
- Base1PluginExecuter
- Base1PluginExecuter.Base1JobParameterType
- BaseException
- BaseFileExporter
- BaseFileExporterPlugin
- BaseFileExporterPlugin.ExtendedDynamicField
- BaseFileExporterSupport
- BaseFileImporter
- BaseFileImporter.RawDataProxy
- BaseFileImporter.ReporterProxy
- BaseFileImporterSupport
- BaseFileInfo
- BaseFileInfo.ChildBioAssay
- BaseFileInfo.SpotSectionInfo
- BaseFileParser
- BaseFileSectionParser
- BaseFileWrapper
- BaseFileWriter
- BaseInputStreamLocator
- BasicBatcher
- BasicChildItem
- BasicData
- BasicItem
- BasicItemFilter
- BasicItemNodeLoader
- BasicItemNodeLoaderFactory
- BasicItemNodeValidatorFactory
- BasicItemToIdTransformer
- BasicNodeValidator
- BatchableData
- BatchedPropertyInfo
- Batcher
- BatchUtil
- BCrypt
- BeanActionFactory
- BetweenRestriction
- BfsExporter
- BfsExporterPlugin
- BfsExporterPlugin.ExtendedExportableField
- BfsExporterSupport
- BfsImporter
- BfsImporter.ProgressEventHandler
- BfsImporterSupport
- BfsParser
- BioAssay
- BioAssayData
- BioAssayExperimentalFactorLoader
- BioAssaySet
- BioAssaySetData
- BioAssaySetFilterUtil
- BioAssaySetUtil
- BioMaterial
- BioMaterialData
- BioMaterialEvent
- BioMaterialEvent.Type
- BioMaterialEventData
- BioMaterialEventLogger
- BioMaterialEventSource
- BioMaterialEventSource.BioMaterialEventSourceTransformer
- BioMaterialEventSourceData
- BioMaterialEventSourceFormatter
- BioPlate
- BioPlateData
- BioPlateEvent
- BioPlateEventData
- BioPlateEventLoader
- BioPlateEventParticipant
- BioPlateEventParticipantData
- BioPlateEventType
- BioPlateEventTypeData
- BioPlateImporter
- BioPlateLoader
- BioPlateNameGenerator
- BioPlateType
- BioPlateTypeData
- BioPlateValidator
- BioSource
- BioSourceData
- BioSourceImporter
- BioSourceLoader
- BioSourceToSampleTransformer
- BioSourceValidator
- BioWell
- BioWell.LockMode
- BioWellData
- BioWellLoader
- BioWellNameGenerator
- BlockInfo
- Body
- BooleanExpression
- BooleanFormatter
- BooleanFormatter.Type
- BooleanParameterType
- BooleanParameterValueData
- BooleanWriter
- Bundle
- Button
- Button
- ButtonAction
- ButtonBean
- ButtonGroup
- ByteArrayWriter
- Bzip2FilePacker
- Bzip2FileUnpacker
- CacheControlFilter
- CalendarButton
- CaseExpression
- CdfFileReporterImporter
- CdfValidationAction
- CdfValidationFactory
- CdfValidator
- Cell
- CellStyleCreator
- CellValue
- CelValidationAction
- CelValidationFactory
- CelValidator
- ChainedProgressReporter
- ChangeHistory
- ChangeHistoryData
- ChangeHistoryDetailData
- ChangeHistoryDetailLoader
- ChangeHistoryUtil
- ChangeType
- ChannelFunction
- CharacterEncodingFilter
- CharsetDetector
- CharsetUtil
- ChildItem
- ChildNodeDirection
- ChildNodeLoaderAction
- ClassLocal
- ClassMapErrorHandler
- ClassUtil
- Client
- ClientContext
- ClientData
- ClientDefaultSetting
- ClientDefaultSettingData
- ClonableProperty
- ClonableReporterQuery
- CloneReportersPlugin
- CloseResourceInputStream
- CmdLine
- ColFunction
- CollectedExtractsToDerivedBioAssayTransformer
- CollectedExtractsToRawBioAssayTransformer
- CollectExtracts
- CollectionFormatter
- CollectionTransformer
- ColorFormatter
- ColorGenerator
- Coloring
- ColoringData
- ColumnDef
- ColumnDef.NullIterator
- ColumnHeaders
- ColumnMapper
- CombiningEventFilter
- CommonData
- CommonItem
- CompactButtonRenderer
- CompactButtonRendererFactory
- ComparableComparator
- CompileAll
- ComponentData
- CompoundMapper
- ConditionalQueryElement
- Config
- ConfigurationException
- ConfigureByExample
- ConnectionClosedException
- ConnectionManager
- ConnectionManagerFactory
- ConnectionManagerUtil
- ConnectionParameters
- ConsoleProgressReporter
- ConstantMapper
- ContentSecurityPolicyFilter
- ContentSecurityPolicyReportServlet
- ContextData
- ContextIndex
- ContextKey
- ContextUtil
- ContextUtil.ContextResult
- ContextUtil.IsInContextFilter
- Controlled
- ConverterFactory
- Coordinate
- CountExpression
- CropStringMapper
- CustomRequestHandler
- Data
- DatabaseException
- DataCube
- DataCube.RawMappingQuery
- DataCubeColumn
- DataCubeColumnData
- DataCubeData
- DataCubeExtraValue
- DataCubeExtraValueData
- DataCubeFilter
- DataCubeFilterData
- DataCubeLayer
- DataCubeLayerData
- DataFileFormatter
- DataFileLoader
- DataFileType
- DataFileTypeData
- DataFileValidator
- DataLoader
- DataNoFunction
- DataParser
- DataQuery
- DataQueryWrapper
- DataResultIterator
- DataWriter
- DataWriterFactory
- DateFormatException
- DateFormatter
- DateParameterType
- DateParameterValueData
- DateUtil
- DateWriter
- DbControl
- DbControl.SaveIf
- DbControl.State
- DbEngine
- DbIndexWork
- DbLogManager
- DbLogManagerFactory
- DebugOnSaveActionFactory
- DebugOnSaveActionFactory.DebugOnSaveAction
- DefaultConfigurationValues
- DefaultDbEngine
- DefaultEntityLogger
- DefaultFilter
- DefaultItemFunction
- DefaultRequestHandler
- DelegatingSignalHandler
- DeletedFilter
- DeleteResourcesProcessor
- DeprecationLogger
- DerivedBioAssay
- DerivedBioAssay.FixDerivedBioAssayParentsRecursivelyAction
- DerivedBioAssayData
- DerivedBioAssayImporter
- DerivedBioAssayLoader
- DerivedBioAssayToChildDerivedBioAssayTransformer
- DerivedBioAssayToParentDerivedBioAssayTransformer
- DerivedBioAssayToPhysicalBioAssayTransformer
- DerivedBioAssayToRawBioAssayTransformer
- DerivedBioAssayValidator
- DescOrder
- DetachedItemException
- DeviceNotVerifiedException
- Diff3
- DirectionalCacheKey
- Directory
- DirectoryData
- DisabledInheritanceFilter
- DisablePluginsProcessor
- DisallowedValueException
- DiskConsumable
- DiskConsumableData
- DiskFileWrapper
- DiskInputStreamLocator
- DiskUsage
- DiskUsageData
- DiskUsageStatistics
- DivideConverter
- DivideExpression
- DoubleParameterType
- DoubleParameterValueData
- DoubleWriter
- Download
- DropDynamicTableAction
- DummyJobExecutor
- DummyService
- DuplicateWizardException
- Dynamic
- DynamicActionAttribute
- DynamicActionAttributes
- DynamicActionAttributeSupport
- DynamicExtraValueQuery
- DynamicField
- DynamicFilter
- DynamicJoin
- DynamicPositionQuery
- DynamicPositionQueryJoiners
- DynamicPositionQueryJoiners.ExtraValueJoiner
- DynamicPositionQueryJoiners.ReporterJoiner
- DynamicPositionQueryJoiners.ReporterListJoiner
- DynamicQuery
- DynamicQueryWrapper
- DynamicRawDataQuery
- DynamicRawDataQuery.RawBioAssayJoiner
- DynamicRawDataQuery.ReporterJoiner
- DynamicRawDataQuery.ReporterListJoiner
- DynamicReporterQuery
- DynamicReporterQuery.MasterReporterJoiner
- DynamicReporterQuery.ReporterListJoiner
- DynamicRestriction
- DynamicResultIterator
- DynamicSpotQuery
- DynamicSpotQueryJoiners
- DynamicSpotQueryJoiners.ExtraValueJoiner
- DynamicSpotQueryJoiners.RawDataJoiner
- DynamicSpotQueryJoiners.ReporterJoiner
- DynamicSpotQueryJoiners.ReporterListJoiner
- DynamicUtil
- DynamicUtil.SelectedInfo
- EditUtil
- EmailUtil
- EncoderDecoder
- EncodeUtil
- EngineFactory
- EnhancedThreadSignalHandler
- EntityDetails
- EntityLogger
- EntityLogOptions
- EntityQuery
- EntityQueryWrapper
- Enumeration
- Enumeration.Entry
- EnumFormatter
- EqRestriction
- EqualsConverter
- EqualsFilter
- EqualsHelper
- ErrorHandler
- ErrorHandler
- ErrorHandlerFactory
- EventFilter
- EventHandler
- EventHandler
- EventType
- EventType
- EventTypeFilter
- ExcelFormatter
- ExcelValue
- ExcelValue.BlankValue
- ExcelValue.BooleanValue
- ExcelValue.DateValue
- ExcelValue.IntValue
- ExcelValue.NumericValue
- ExcelValue.StringValue
- ExceptionCatcher
- ExceptionInterruptHandler
- ExecuteUpdateWork
- ExpConverter
- Experiment
- ExperimentalFactorLoader
- ExperimentalFactorValidator
- ExperimentData
- ExperimentExplorer
- ExperimentExplorer.AnnotationGroup
- ExperimentExplorer.AnnotationSummary
- ExperimentExplorer.InExpression
- ExperimentExplorer.ReporterPositions
- ExperimentExplorerPlotServlet
- ExperimentExplorerPlotServlet.ColumnKey
- ExperimentLoader
- ExperimentValidator
- ExpExpression
- ExportableField
- ExportableFieldConverter
- ExportableFieldFactory
- ExportableFieldFormatter
- ExportedProperty
- ExportOutputStream
- ExportTemplate
- Expression
- Expressions
- ExpressionSelect
- ExtendableData
- ExtendedAbout
- ExtendedProperties
- ExtendedProperty
- ExtendedPropertyAccessor
- ExtendedPropertyAccessor.GetterSetter
- ExtendedPropertyFormatter
- ExtendedPropertyLinker
- Extension
- ExtensionBean
- ExtensionCells
- ExtensionChildNodeLoader
- ExtensionContext
- ExtensionEventFilter
- ExtensionKey
- ExtensionNodeValidator
- ExtensionPoint
- ExtensionPointBean
- ExtensionPointContext
- ExtensionPointEventFilter
- ExtensionPointFilter
- ExtensionPointKey
- ExtensionsControl
- ExtensionsFile
- ExtensionsFile.WriteableExtensionsFile
- ExtensionsFileProcessor
- ExtensionsFilter
- ExtensionSignalTransporter
- ExtensionSignalTransporter.SendSignalRenderer
- ExtensionsInvoker
- ExtensionsManager
- ExtensionsManager.JarFirstURIComparator
- ExtensionsServlet
- ExtensionsUtil
- ExternalProgramExecutor
- ExternalProgramExecutor.RequestWrapper
- ExternalProgramExecutor.ResponseWrapper
- Extract
- ExtractData
- ExtractImporter
- ExtractLoader
- ExtractNameGenerator
- ExtractResourcesProcessor
- ExtractToChildExtractTransformer
- ExtractToParentExtractTransformer
- ExtractToPhysicalBioAssayTransformer
- ExtractToSampleTransformer
- ExtractValidator
- ExtractValidator.TagPosition
- ExtraFileImporter
- ExtraFloatParser
- ExtraUserInformation
- ExtraValue
- ExtraValue.CoordinateType
- ExtraValueData
- ExtraValueExpression
- ExtraValueFunction
- ExtraValueJoin
- ExtraValueType
- ExtraValueTypeData
- FactoryParametersKey
- Failure
- FallbackIdMethod
- Feature
- FeatureBatcher
- FeatureCoordinate
- FeatureData
- FeatureIdentificationMethod
- FieldInfo
- File
- FileAttachable
- FileAttachableData
- FileCopyRunnable
- FileData
- FileExportOutputStream
- FileImporter
- FileImportInputStream
- FilenameGenerator
- FileOnlyImporterSupport
- FilePacker
- FileParameterType
- FilePathFormatter
- FileServer
- FileServerData
- FileSet
- FileSet.QueryRuntimeFilterImpl
- FileSetData
- FileSetMember
- FileSetMember.QueryRuntimeFilterImpl
- FileSetMemberData
- FileSetMemberLoader
- FileSetMemberLogger
- FileSetMemberNameGenerator
- FileStoreEnabled
- FileStoreEnabledData
- FileStoreUtil
- FileTypeIndex
- FileUnpacker
- FileUpload
- FileUpload.SectionHeaders
- FileUpload.UploadStatus
- FileUploadProgress
- FileUtil
- FileViewerContext
- FileViewerContext.Type
- FileViewerUtil
- FileWrapper
- Filter
- FilterBatcher
- FilterUtil
- FirstPassSectionSpotsParser
- Fix
- FixedButtonFactory
- FixedMenuItemFactory
- FixedSkinActionFactory
- FixedSkinActionFactory.MySkinAction
- FixedStartPageFactory
- FixedTabFactory
- FlatFileParser
- FlatFileParser.Data
- FlatFileParser.ExcelData
- FlatFileParser.Line
- FlatFileParser.LineType
- FloatConverter
- FloatExpression
- FloatParameterType
- FloatParameterValueData
- FloatWriter
- Form
- Formatter
- FormatterFactory
- FormatterSettings
- Formula
- Formula.AverageMethod
- Formula.Parser
- Formula.Type
- FormulaData
- FormulaFilter
- ForwardingSignalHandler
- FunctionSafeJep
- FunctionSafeJep.SafeFunctionTable
- FunctionSafeJep.UnknownFunction
- GalExporter
- GenericBaseDataWriterFactory
- GenericDiskDataWriterFactory
- GenericExtraFileImporter
- GenericIntensityParser
- GenericOverview
- GeoLocation
- GeoLocation.ResponseFilter
- GeometricMeanExpression
- GetCurrentCatalogWork
- GlobalDefaultSetting
- GlobalDefaultSettingData
- GreaterConverter
- GreaterEqualsConverter
- Group
- Group.QueryRuntimeFilterImpl
- GroupData
- GroupGroups
- GroupKeys
- GroupPermissions
- GroupProjects
- GteqRestriction
- GtfInputStream
- GtfInputStream.Attribute
- GtfReporterImporter
- GtfReporterMapImporter
- GtfValidationAction
- GtfValidationFactory
- GtRestriction
- GuiContext
- GuiContext.Type
- GuiContextData
- GzipFilePacker
- GzipFileUnpacker
- Hardware
- HardwareData
- HardwareLoader
- HardwareValidator
- HasAnnotationRestriction
- HasAttributeFilter
- Head
- Header
- HeaderRow
- Headers
- Help
- Help
- HelpData
- HelpExporter
- HelpImporter
- HibernateUtil
- HibernateUtil.DelayedFilterDef
- HibernateUtil.FilterConfigurator
- Hidden
- HideableSection
- HistogramPlot
- HistogramPlot.HistogramBin
- HistogramPlot.HistogramDataset
- HistogramPlot.HistogramSeries
- HistogramPlot.TempSeries
- HistogramPlot.YAggregate
- Hql
- HqlElementsExpression
- HqlEntityExpression
- HqlEntityParameterExpression
- HqlExpression
- HqlIndexExpression
- HqlInnerJoin
- HqlLeftJoin
- HqlPropertyExpression
- HqlQuery
- HqlQueryJoiners
- HqlQueryJoiners.AnnotationJoiner
- HqlQueryJoiners.ReporterListJoiner
- HqlRightJoin
- HqlSizeExpression
- HTML
- HttpConnectionManager
- HttpConnectionManager.TimeoutTimer
- HttpConnectionManagerActionFactory
- HttpConnectionManagerFactory
- HttpUtil
- Icon
- Identifiable
- IdentifiableData
- IdentifiableFormatter
- IdentityConverter
- IdentityEncoderDecoder
- IdentityFilter
- IdentityUnitConverter
- IdListRestriction
- IdMethod
- IfConverter
- IgnoreFileProcessor
- IgnoreFilter
- IlluminaRawDataImporter
- IlluminaRawDataImporter.BatchAndMapHolder
- ImageRemapFilter
- ImageRemapper
- ImageRemapperUtil
- ImmediateDownloadExporter
- ImportInputStream
- Include
- IncludeContentSectionFactory
- IncludeContentTabFactory
- IncludeExcludeFilter
- IndexedCacheKey
- InfoRequestHandler
- InheritAnnotationsManager
- InheritAnnotationsManager.AnnotationTypeFilter
- InheritAnnotationsManager.UsableParentFilter
- InheritSpecification
- InputStreamCombiner
- InputStreamLocator
- InputStreamSplitter
- InputStreamTracker
- InReporterListFunction
- InRestriction
- Install
- Install.ItemSubtypeFT
- Install.PlatformFT
- InstalledFileProcessor
- InstalledFilter
- InstallFilter
- InstanceOfFilter
- IntegerConverter
- IntegerExpression
- IntegerFormatter
- IntegerParameterType
- IntegerParameterValueData
- IntegerUtil
- IntegerWriter
- IntensityCalculator
- IntensityCalculatorPlugin
- IntensityCalculatorUtil
- IntensityCalculatorUtil.JepIntensityCalculatorImpl
- IntensityFormula
- IntensityTransform
- InteractivePlugin
- InternalIdMethod
- InternalJobQueue
- InternalJobQueue.JobQueueKeyring
- InternalSlotManager
- InterruptHandler
- InvalidAndModifiedFilter
- InvalidAnnotationException
- InvalidDataException
- InvalidPasswordException
- InvalidPasswordException
- InvalidPathException
- InvalidRelationException
- InvalidUseOfNullException
- InverseFilter
- InvokationContext
- IOSupport
- Item
- Item.DefinedPermissions
- ItemAlreadyExistsException
- ItemContext
- ItemContext.PropertyFilterPair
- ItemContext.SortDirection
- ItemInUseException
- ItemKey
- ItemKeyData
- ItemList
- ItemList.DelayedAdditionManager
- ItemList.SynchronizeOption
- ItemListData
- ItemListLoader
- ItemListMemberNameGenerator
- ItemListSyncFilterData
- ItemModifiedException
- ItemNotFoundException
- ItemParameterType
- ItemParameterValueData
- ItemProxy
- ItemQuery
- ItemQueryLoader
- ItemQueryWrapper
- ItemResultIterator
- ItemResultList
- ItemSubtype
- ItemSubtypeData
- ItemSubtypeFileType
- ItemSubtypeFileTypeData
- ItemTypeFilter
- ItemTypeFormatter
- JarClassLoader
- JarClassLoader.JarClassLoaderProxy
- JarClassLoader.JarInfo
- Jep
- JepConversionFunction
- JepDynamicField
- JepExpressionFunction
- JepExtraValueCalculator
- JepFunction
- JepIntensityTransformer
- JepMapper
- JepRestrictionFunction
- Job
- Job.ExecutionTime
- Job.ProgressReporterImpl
- Job.SignalKeyring
- Job.Status
- Job.Type
- JobAgent
- JobAgentConnection
- JobAgentData
- JobAgentInfo
- JobAgentServerConnection
- JobAgentServerConnection.ListenerThread
- JobAgentServerConnection.RequestHandlerThread
- JobAgentSettings
- JobAgentSettingsData
- JobData
- JobExecutor
- JobInfo
- JobQueueChecker
- JobRunner
- Join
- JoinType
- JsonConverter
- JsonUtil
- JspContext
- Key
- KeyData
- KeyPermission
- Keyring
- Kit
- KitData
- KitImporter
- KitLoader
- KitValidator
- Label
- LeftFunction
- LessConverter
- LessEqualsConverter
- LikeRestriction
- LinearUnitConverter
- LineNoFunction
- LinkedItemFormatter
- Listable
- ListableUtil
- ListColumnAction
- ListColumnDataLoader
- ListColumnExportRenderer
- ListColumnUtil
- ListUtil
- LoadServletsProcessor
- LocalSignalReceiver
- LocalSignalTransporter
- Location
- Log10MACalculator
- Log2Function
- Log2MACalculator
- LogarithmConverter
- LogControl
- LogExpression
- LoggableData
- LoggingErrorHandlerFactory
- LoggingErrorHandlerFactory.Level
- LoggingInterceptor
- LoggingInterceptor.LogDetails
- LoggingInterceptor.LogManagerAndFactory
- LoginException
- LoginException
- LoginFormAction
- LoginFormBean
- LoginRequest
- LogManager
- LogManagerFactory
- LogUtil
- LongParameterType
- LongParameterValueData
- LongWriter
- LookupFormatter
- LowessNormalization
- LowessNormalization.CallableWorker
- LowessNormalization.SpotData
- LteqRestriction
- LtRestriction
- MACalculator
- ManualDerivedBioAssayCreator
- ManualEntryLogger
- ManualLogEntry
- ManualTransformCreator
- MAParser
- MAPlotFactory
- Mapper
- MappingBatcher
- MappingCoordinate
- MapValueLoader
- MarkAsProcessedProcessor
- MasterSlotManager
- MasterSlotManager.RemoteSlot
- MasterSlotManager.RemoteSlotRequestHandler
- MasterSlotManager.RemoteSlotTimeoutChecker
- MatrixBaseFileExporter
- MatrixBfsExporter
- MatrixModel
- MatrixSpotIntensityEventHandler
- MaxExpression
- MD5
- MeanExpression
- MeanFunction
- MeanRawDataPropertyExpression
- MeasuredBioMaterial
- MeasuredBioMaterial.RemainingQuantityAction
- MeasuredBioMaterialData
- MedianRatioNormalization
- MedianRatioNormalization.SpotData
- Menu
- Menuitem
- MenuItemAction
- MenuItemAction.MenuType
- MenuItemBean
- Menuseparator
- Message
- MessageData
- Metadata
- Metadata.BasicData2ItemPropertyPath
- Metadata.BasicItem2DataPropertyPath
- Metadata.CollectionPropertyPath
- Metadata.CombinedPropertyPath
- Metadata.ComponentPropertyPath
- Metadata.DateCopyPropertyPath
- Metadata.EntityPropertyPath
- Metadata.EvictPropertyPath
- Metadata.IdentifierPropertyPath
- Metadata.MapPropertyPath
- Metadata.NoopPropertyPath
- Metadata.PropertyPath
- Metadata.ReporterScore2DataPropertyPath
- MetadataModel
- MetadataModel.Section
- MetadataModel.SectionEntry
- MetadataParser
- MetadataWriter
- Migration
- MimeType
- MimeTypeData
- MinExpression
- ModeInfo
- MultiEventHandler
- MultiFormatter
- MultiPermissions
- MultiplyConverter
- MultiplyExpression
- MultiPropertyIdMethod
- MultiProtocolRequestHandler
- MultiQueryIterator
- MultiStepCollectionTransformer
- MultiUpdateWork
- MySQLEngine
- Nameable
- NameableComparator
- NameableConverter
- NameableData
- NameableFormatter
- NameableNameGenerator
- NameableNodeValidator
- NameableUtil
- NamespaceParameterValuesWrapper
- NamespacePluginParameter
- NamespaceRequestWrapper
- NativeQueryWrapper
- NativeSQLFunction
- NaturalLogarithmConverter
- Navigator
- NegateExpression
- NeqRestriction
- NestedIterator
- News
- News.QueryRuntimeFilterImpl
- NewsData
- NiceFormatter
- Node
- Node.Type
- NodeAttribute
- NodeCache
- NodeFactory
- NodeLoader
- NodeLoaderFactory
- NodeNameGenerator
- NodeTypeFilter
- NodeValidator
- NodeValidatorAction
- NodeValidatorFactory
- NoneOfFilter
- NonRestartable
- NotConverter
- NotEqualsConverter
- NotInReporterListFunction
- NotLoggable
- NotLoggedInException
- NotNullFilter
- NotRestriction
- NullIfExceptionMapper
- NullNodeLoader
- NullNodeValidator
- NumberFormatFormatter
- NumberFormatter
- NumberFormatUtil
- NumberOutOfRangeException
- ObjectKey
- OlderThanFileFilter
- OneOfFilter
- OnSaveAction
- OnSaveRenderer
- Operator
- OrConverter
- Order
- Orders
- OrRestriction
- OverviewContext
- OverviewPlotAction
- OverviewPlotBean
- OverviewUtil
- Ownable
- OwnableData
- OwnableUtil
- OwnableUtil
- OwnedData
- OwnedItem
- PackedFileExporter
- PackUtil
- Page
- Panel
- ParameterDefinition
- ParameterException
- ParameterExpression
- ParameterInfo
- Parameters
- ParameterType
- ParameterValueData
- ParameterValues
- ParameterValuesImpl
- ParameterValuesWrapper
- ParentBioMaterialEventSourceLoader
- ParentBioMaterialEventSourceLoaderFromBioAssay
- ParentBioMaterialLoader
- ParentItemAnnotationColumn
- ParentItemColumn
- ParentItemColumnActionFactory
- ParentItemHelper
- ParentItemHelper.CloseMyDbControl
- ParentItemPropertyColumn
- PasswordData
- PasswordLoginFormFactory
- PasswordParameterType
- Path
- Path
- Path.Type
- PathConverter
- PathElement
- PathLoader
- PathParameterType
- PathSetter
- PathType
- PauseRequestHandler
- PerformanceTimer
- Permission
- PermissionButtonFactory
- PermissionDeniedException
- PermissionMenuItemFactory
- PermissionRestriction
- Permissions
- PermissionTemplate
- PermissionTemplateData
- PermissionUtil
- PhysicalBioAssay
- PhysicalBioAssayData
- PhysicalBioAssayImporter
- PhysicalBioAssayLoader
- PhysicalBioAssayToDerivedBioAssayTransformer
- PhysicalBioAssayToExtractTransformer
- PhysicalBioAssayValidator
- PingRequestHandler
- PlainTextTemplate
- Plate
- PlateCoordinate
- PlateData
- PlateEvent
- PlateEventData
- PlateEventLogger
- PlateEventType
- PlateEventTypeData
- PlateFlatFileImporter
- PlateGeometry
- PlateGeometryData
- PlateMapping
- PlateMappingData
- PlateMappingExporter
- PlateMappingImporter
- PlateType
- PlateTypeData
- Platform
- PlatformData
- PlatformFileType
- PlatformFileTypeData
- PlatformLoader
- PlatformValidator
- PlatformVariant
- PlatformVariantData
- PlotAnnotation
- PlotGenerator
- PlotGeneratorBean
- PlotServlet
- PlotServlet.CFResultIterator
- PlotServlet.CFSqlResult
- Plugin
- Plugin.MainType
- PluginConfiguration
- PluginConfigurationData
- PluginConfigurationExporter
- PluginConfigurationImporter
- PluginConfigurationRequest
- PluginDefinition
- PluginDefinitionData
- PluginDefinitionFilter
- PluginExecutionRequest
- PluginInfo
- PluginInfoKey
- PluginInstallationProcessor
- PluginKeys
- PluginParameter
- PluginPermission
- PluginPermission
- PluginRequest
- PluginResponse
- PluginSessionControl
- PluginType
- PluginTypeData
- PositionBatcher
- PositionEventHandler
- PositionExtraValueBatcher
- PositionFunction
- PostgresDbEngine
- PostgresResultWriterFactory
- PowerExpression
- PredefinedQuery
- PrefixSuffixFormatter
- PrefixSuffixRenderer
- Presets
- Presets.Preset
- PresetSelector
- PrintMapFlatFileImporter
- PrintMapFlatFileImporter.FormatType
- PrintMapFlatFileImporter.MetaBlock
- PrintMapFlatFileImporter.Section
- PriorityComparator
- ProcessJobExecutor
- ProcessJobExecutor.StreamRedirector
- ProcessResults
- ProcessResults.FileResults
- ProgramParameter
- ProgressInputStream
- ProgressReporter
- ProgressReporterSignalHandler
- Project
- Project.QueryRuntimeFilterImpl
- ProjectData
- ProjectKey
- ProjectKeyData
- ProjectKeys
- ProjectPermission
- ProjectPermissions
- ProjectSpecificAnnotationsManager
- ProjectSpecificAnnotationsManager.AnnotationInfo
- ProjectSpecificInfoFilter
- PropertyFilter
- PropertyFilter
- PropertyFilterData
- PropertyFilterFormatter
- PropertyIdMethod
- PropertyPathActionFactory
- PropertyPathActionFactory.PropertyPathAction
- PropertyPathProtected
- PropertyValue
- Protocol
- ProtocolData
- ProtocolLoader
- ProtocolParameterLoader
- ProtocolParameterValidator
- ProtocolValidator
- ProxyActionFactory
- PushToParentsTransformer
- QuadraticMeanExpression
- Quantity
- QuantityData
- Query
- QueryElement
- QueryExecutor
- QueryExecutor.Cancelable
- QueryExecutor.CancelableSession
- QueryExecutor.CancelableStatelessSession
- QueryExecutor.CancelableStatement
- QueryExecutor.FutureItem
- QueryExecutor.FutureResultSet
- QueryExecutor.FutureScrollIterator
- QueryExecutor.FutureUpdate
- QueryParameter
- QueryParameters
- QueryResult
- QueryRuntimeFilter
- QueryRuntimeFilterFactory
- QueryRuntimeFilterFactory.AnnotatableFilter
- QueryRuntimeFilterFactory.BasicFilter
- QueryRuntimeFilterFactory.ChainedFilter
- QueryRuntimeFilterFactory.ChildFilter
- QueryRuntimeFilterFactory.DenyAllFilter
- QueryRuntimeFilterFactory.OwnableFilter
- QueryRuntimeFilterFactory.RemovableFilter
- QueryRuntimeFilterFactory.ShareableFilter
- QueryRuntimeFilterManager
- QuerySection
- QueryType
- QueryWrapper
- QueryWrapper
- Quota
- Quota.QueryRuntimeFilterImpl
- QuotaData
- QuotaException
- QuotaIndex
- QuotaType
- QuotaTypeData
- RawBioAssay
- RawBioAssayData
- RawBioAssayImporter
- RawBioAssayLoader
- RawBioAssayPropertyExpression
- RawBioAssayToDerivedBioAssayTransformer
- RawBioAssayValidator
- RawChannelFunction
- RawData
- RawDataBatcher
- RawDataBatcher.FeatureInfo
- RawDataBatcher.FeatureProxy
- RawDataBatcher.ReporterProxy
- RawDataFlatFileImporter
- RawDataProperty
- RawDataPropertyExpression
- RawDataType
- RawDataTypes
- RawDataTypes.NameComparator
- RawDataUtil
- RawFunction
- RealJoin
- RealTable
- ReflectValidationRuleActionFactory
- RegexpFileFilter
- Registered
- RegisteredData
- RegisterExtensionsProcessor
- RegisterExtensionsProcessor.FileData
- Registry
- Registry.AttributeKey
- Registry.RegisteredAbout
- Registry.RegisteredEventHandler
- Registry.RegisteredExtension
- Registry.RegisteredExtensionPoint
- RemoteSlotManager
- RemoteSlotManager.RemoteSlotPinger
- Removable
- RemovableData
- RemovableUtil
- RemoveAllTransformer
- Render
- Renderer
- RendererFactory
- Reporter
- ReporterBatcher
- ReporterCloneBatcher
- ReporterCloneBatcher.CloneSource
- ReporterClonePropertyData
- ReporterCloneTemplate
- ReporterCloneTemplateData
- ReporterData
- ReporterFlatFileImporter
- ReporterFunction
- ReporterList
- ReporterListData
- ReporterListExpression
- ReporterListJoin
- ReporterListScoreData
- ReporterMapFlatFileImporter
- ReporterPropertyExpression
- ReporterScore
- ReporterScoreQuery
- ReporterScoreQueryWrapper
- ReporterScoreResultIterator
- ReporterType
- ReporterTypeData
- Request
- RequestHandler
- RequestInformation
- RequestWrapper
- ResetMetadataRenderer
- ResetProcessor
- ResourceBundleFactory
- ResourceBundleWrapper
- Response
- Response.Status
- Restriction
- Restrictions
- ResultIterator
- ResultList
- ResultSetWork
- ResultWriter
- ResultWriterFactory
- ResumableConnectionManager
- RethrowErrorHandlerFactory
- ReturnClassFilter
- RlikeRestriction
- Role
- Role.QueryRuntimeFilterImpl
- RoleData
- RoleKey
- RoleKeyData
- RoleKeys
- RootRawBioAssay
- RootRawBioAssayData
- RootRawBioAssayLoader
- Row
- Rows
- RssNewsFeed
- RunnableInheritAnnotationsManager
- Sample
- SampleData
- SampleImporter
- SampleLoader
- SampleToBioSourceTransformer
- SampleToChildSampleTransformer
- SampleToExtractTransformer
- SampleToParentSampleTransformer
- SampleValidator
- SavePointWork
- ScatterPlot
- Scheduler
- SchemaExistsWork
- SchemaGenerator
- SchemaGenerator.CollectSqlTarget
- SchemaGenerator.Mode
- SchemaGenerator.SqlStatement
- SchemaVersionData
- ScoreFunction
- Scripts
- ScrollIterator
- SecondPassSectionSpotsParser
- SectionAction
- SectionAssaysParser
- SectionBean
- SectionReporterListParser
- Select
- Select
- SelectedExpression
- Selects
- SequenceFilenameGenerator
- SerialBaseFileExporter
- SerialBfsExporter
- SerialSpotIntensityEventHandler
- ServiceControllerAction
- Services
- ServiceSessionControl
- ServiceSessionControl.FlushSessionAction
- ServiceSessionControl.ServicesKeyring
- ServicesEventHandler
- ServicesUtil
- ServletExportOutputStream
- ServletLoader
- ServletWrapper
- ServletWrapperKey
- Session
- SessionControl
- SessionControl.LoginInfo
- SessionControl.SettingInfo
- SessionControl.UnverifiedDeviceInfo
- SessionData
- SessionFactoryConfiguration
- SessionWrapper
- Setting
- SettingData
- Settings
- Severity
- Shareable
- ShareableData
- ShareableUtil
- ShareableUtil
- SharedData
- SharedItem
- SharedToRestriction
- ShortWriter
- ShutdownSignalSender
- Signal
- SignalException
- SignalHandler
- SignalReceivedException
- SignalReceiver
- SignalRequestHandler
- SignalSender
- SignalTarget
- SignalTransporter
- SimpleAbsoluteProgressReporter
- SimpleDynamicField
- SimpleErrorHandler
- SimpleExport
- SimpleJepFunction
- SimpleProgressReporter
- SimpleSignalProgressReporter
- SimpleSignalSender
- SimpleStringDetector
- SingleExtensionFilter
- SingleFileValidationAction
- SkinAction
- Slot
- SlotManager
- SnapshotManager
- SocketSignalReceiver
- SocketSignalTransporter
- SocketUtil
- Software
- SoftwareData
- SoftwareLoader
- SoftwareValidator
- SourceItemTransformer
- SourceItemTransformerChain
- SourceItemTransformerFactory
- SourceItemTransformerWithCache
- SourceItemTransformerWithCache.TransformerWithCache
- SpecialQuery
- SpotBatcher
- SpotExtraValueBatcher
- SpotIntensityParser
- SqlColumnExpression
- SqlQuery
- SqlResult
- SqlResultIterator
- SqlResultList
- SqrtExpression
- SquareRootConverter
- SSLUtil2
- StandardFieldConverter
- StartPageAction
- StartPageBean
- StartRequestHandler
- StartServiceRenderer
- StartStopServlet
- StatelessSessionWrapper
- StaticCache
- StaticCache.CleanupTask
- StaticCache.LockEntry
- StaticCache.LockSafeInputStream
- StaticCache.LockSafeOutputStream
- StaticCache.State
- StaticFilter
- StaticKeyManager
- StopRequestHandler
- StopServiceRenderer
- StreamCacher
- StringConverter
- StringConverter
- StringDetector
- StringFormatter
- StringLengthComparator
- StringMatcher
- StringMatcher.FuzzyMatch
- StringParameterType
- StringParameterValueData
- StringTooLongException
- StringUtil
- StylableTag
- Stylesheets
- Submenu
- SubqueryExpression
- SubtractConverter
- SubtractExpression
- Subtypable
- SubtypableData
- SubtypableRelatedItems
- SubtypeFilter
- SuggestedFilenameGenerator
- SumExpression
- SupportsPushAnnotations
- SyncFilter
- SyncFilter.SourceItemTransform
- SynchronizedSpotDataParser
- SynchronizedSpotDataParser.SynchronizedData
- SystemData
- SystemItem
- SystemItems
- Tab
- TabAction
- TabBean
- TabControl
- TabCrLfEncoderDecoder
- Table
- TableColumn
- TableExistsWork
- TableInfo
- TableInfo.ColumnInfo
- TableInfo.ForeignKeyInfo
- TableInfo.IndexInfo
- TableInfo.PrimaryKeyInfo
- TableInfoWork
- TableWriter
- Tag
- TagData
- TagImporter
- TagLoader
- TagValidator
- TarFilePacker
- TarFileUnpacker
- TarUtil
- TextParameterValueData
- TextWriter
- ThreadJobExecutor
- ThreadJobExecutor.ShutdownHook
- ThreadSignalHandler
- ThreadTimerTask
- ThrowableUtil
- TimestampParameterType
- TimestampParameterValueData
- TimestampWriter
- ToBioSourceSourceItemTransformerFactory
- ToDateExpression
- ToDerivedBioAssaySourceItemTransformerFactory
- ToExtractSourceItemTransformerFactory
- Toolbar
- ToolbarButtonRenderer
- ToolbarButtonRendererFactory
- ToolbarUtil
- ToPhysicalBioAssaySourceItemTransformerFactory
- ToRawBioAssaySourceItemTransformerFactory
- ToSampleSourceItemTransformerFactory
- ToSpaceEncoderDecoder
- ToStringComparator
- ToStringFormatter
- Transactional
- Transactional.Action
- TransactionalAction
- TransactionDetails
- TransferRateProgressReporter
- Transformation
- TransformationData
- TransformCache
- TransformCache.CacheEntry
- TransformCache.CacheKey
- TransformContext
- Transformer
- Trashcan
- Trashcan.CircularRefInfo
- Tree
- Tree.Entry
- Type
- TypeWrapper
- UMinusConverter
- UninstalledFileProcessor
- UninstallFilter
- Unit
- UnitCache
- UnitCache.CacheKey
- UnitConverter
- UnitData
- UnitSymbolData
- UnitUtil
- UnknownLoginException
- UnmodifiableResultList
- UnregisterExtensionsProcessor
- UnsafeScriptable
- UnsavedItemException
- UnsupportedFileFormatException
- UnsupportedSignalException
- Update
- Update.DropColumnChange
- Update.SchemaChange
- Upload
- UploadAbortedException
- UploadedFile
- UriMetadata
- UsableDataFileType
- User
- User.QueryRuntimeFilterImpl
- UserClientSetting
- UserClientSettingData
- UserData
- UserDefaultSetting
- UserDefaultSettingData
- UserDevice
- UserDeviceData
- UserGroups
- UserKeys
- UserPermissions
- UserProjects
- UserRoles
- Utf8PropertiesResourceBundleControl
- ValidAndNewOrModifiedFilter
- Validatable
- ValidatingFileSetMember
- ValidationAction
- ValidationOptions
- ValidationRenderer
- ValidationRuleAction
- Validator
- ValueConverter
- Values
- Values
- ValueTypeFormatter
- VariableConverter
- VariableSetter
- Version
- VersionedParameter
- ViewAndDownloadActionFactory
- VirtualColumn
- VirtualColumnExpression
- VirtualColumnExpression.WrappedExpression
- VirtualDb
- VirtualDbData
- VirtualTable
- WasProcessedFilter
- WebClientRegisterExtensionsProcessor
- WebException
- Well
- WellCoordinateFormatter
- WellData
- WhenStatement
- WrappedConfigureByExample
- WrappedFormatter
- WrappingRenderer
- XJspCompiler
- XlsxTableWriter
- XlsxTemplate
- XlsxToCsvUtil
- XlsxToCsvUtil.CellTypeWithInfo
- XmlLoader
- XMLTemplate
- XmlUtil2
- XmlUtil2.Validator
- ZipFilePacker
- ZipFileUnpacker
- ZipUnpacker
- Zoom