All Classes
About
AboutBean
AboutImpl
AbsConverter
AbsExpression
AbsoluteProgressReporter
AbstractAnalysisPlugin
AbstractBatcher
AbstractBioAssaySetExporter
AbstractCustomRequestHandler
AbstractDataWriterFactory
AbstractDbEngine
AbstractEntityQuery
AbstractExporterPlugin
AbstractFieldConverter
AbstractFilenameGenerator
AbstractFileUnpacker
AbstractFlatFileImporter
AbstractHqlQuery
AbstractIOSupport
AbstractItemImporter
AbstractJepConversionFunction
AbstractJspActionFactory
AbstractJspFactory
AbstractJspRendererFactory
AbstractListColumnBean
AbstractNodeLoader
AbstractOnSaveAction
AbstractPlugin
AbstractQuery
AbstractQueryCache
AbstractResultList
AbstractResultWriter
AbstractSignalHandler
AbstractSignalReceiver
AbstractSignalTransporter
AbstractSourceItemTransformer
AbstractSourceItemTransformerFactory
AbstractSqlQuery
Accept
AccessControlled
AccountExpiredException
Action
ActionClassEventFilter
ActionFactory
ActionIterator
AdaptiveNumberFormatter
AddAllTransformer
AddConverter
AddExpression
AdvancedFieldConverter
AffymetrixUtil
Agent
AgentController
AgentSignalReceiver
Aggregations
AllEventsFilter
AllOfFilter
AllowAnyHostNameVerifyer
AlreadyLoggedInException
AnalysisFilterPlugin
AndConverter
AndRestriction
Annotatable
AnnotatableData
AnnotatableProxy
AnnotatedData
AnnotatedItem
Annotation
Annotation.QueryRuntimeFilterImpl
Annotation.Source
AnnotationAssayField
AnnotationBatcher
AnnotationBatcher.Change
AnnotationBatcher.CurrentAnnotationInfo
AnnotationBatcher.InsertBatcher
AnnotationBatcher.UpdateBatcher
AnnotationBetweenRestriction
AnnotationData
AnnotationExpression
AnnotationFilter
AnnotationFlatFileImporter
AnnotationFlatFileImporter.AnnotationValue
AnnotationFlatFileImporter.NewAnnotations
AnnotationInRestriction
AnnotationJoin
AnnotationLink
AnnotationLoader
AnnotationLoaderUtil
AnnotationLogger
AnnotationModel
AnnotationNameGenerator
AnnotationParser
AnnotationRestriction
AnnotationRestriction.Options
Annotations
AnnotationSet
AnnotationSet.ProjectSpecificAnnotationsRestriction
AnnotationSet.QueryRuntimeFilterImpl
AnnotationSetData
AnnotationSetLogger
AnnotationSetSnapshot
AnnotationSetSnapshot.SortByProjectComparator
AnnotationSetterPlugin
AnnotationSimpleRestriction
AnnotationSnapshot
AnnotationSnapshot.AnnotationTypeComparator
AnnotationType
AnnotationType.RemoveInheritedAnnotationsAction
AnnotationTypeCategory
AnnotationTypeCategoryData
AnnotationTypeData
AnnotationTypeEnumerationLoader
AnnotationTypeFilter
AnnotationTypeImporter
AnnotationTypeItemTypesLoader
AnnotationUtil
AnnotationUtil
AnnotationUtil.AnnotatableWrapper
AnnotationUtil.Cache
AnnotationValidator
AnnotationWriter
AnyToAny
AnyToAnyData
AnyToAnyDataLoader
AnyToAnyLoader
AnyToAnyLogger
AnyToAnyNameGenerator
AnyToAnyRestriction
AnyToAnyValidator
Application
Application.DbCleaner
Application.Pinger
Application.SecondaryStorageControllerTask
Application.SessionControlCacheCleaner
ArrayBatch
ArrayBatchData
ArrayBatchImporter
ArrayBatchLoader
ArrayBatchValidator
ArrayDesign
ArrayDesignBlock
ArrayDesignBlockData
ArrayDesignData
ArrayDesignImporter
ArrayDesignLoader
ArrayDesignPlate
ArrayDesignPlateData
ArrayDesignValidator
ArrayIterator
ArraySlide
ArraySlideData
ArraySlideImporter
ArraySlideLoader
ArraySlideValidator
AscOrder
AssayField
AssayPropertyField
ASTConstantConverter
ASTFunNodeConverter
ASTVarNodeConverter
AuthenticatedUser
AuthenticationContext
AuthenticationException
AuthenticationInformation
AuthenticationManager
AuthenticationMethod
Authenticator
AutoChildNodeLoader
AutoDetectFileFormat
AutoDetectFileFormat.IsImportableFilter
AutoDetectingImporter
AutoJoiner
Base
Base1FieldConverter
Base1PluginExecuter
Base1PluginExecuter.Base1JobParameterType
BaseException
BaseFileExporter
BaseFileExporterPlugin
BaseFileExporterPlugin.ExtendedDynamicField
BaseFileExporterSupport
BaseFileImporter
BaseFileImporter.RawDataProxy
BaseFileImporter.ReporterProxy
BaseFileImporterSupport
BaseFileInfo
BaseFileInfo.ChildBioAssay
BaseFileInfo.SpotSectionInfo
BaseFileParser
BaseFileSectionParser
BaseFileWrapper
BaseFileWriter
BaseInputStreamLocator
BasicBatcher
BasicChildItem
BasicData
BasicItem
BasicItemFilter
BasicItemNodeLoader
BasicItemNodeLoaderFactory
BasicItemNodeValidatorFactory
BasicItemToIdTransformer
BasicNodeValidator
BatchableData
BatchedPropertyInfo
Batcher
BatchUtil
BCrypt
BeanActionFactory
BetweenRestriction
BfsExporter
BfsExporterPlugin
BfsExporterPlugin.ExtendedExportableField
BfsExporterSupport
BfsImporter
BfsImporter.ProgressEventHandler
BfsImporterSupport
BfsParser
BioAssay
BioAssayData
BioAssayExperimentalFactorLoader
BioAssaySet
BioAssaySetData
BioAssaySetFilterUtil
BioAssaySetUtil
BioMaterial
BioMaterialData
BioMaterialEvent
BioMaterialEvent.Type
BioMaterialEventData
BioMaterialEventLogger
BioMaterialEventSource
BioMaterialEventSource.BioMaterialEventSourceTransformer
BioMaterialEventSourceData
BioMaterialEventSourceFormatter
BioPlate
BioPlateData
BioPlateEvent
BioPlateEventData
BioPlateEventLoader
BioPlateEventParticipant
BioPlateEventParticipantData
BioPlateEventType
BioPlateEventTypeData
BioPlateImporter
BioPlateLoader
BioPlateNameGenerator
BioPlateType
BioPlateTypeData
BioPlateValidator
BioSource
BioSourceData
BioSourceImporter
BioSourceLoader
BioSourceToSampleTransformer
BioSourceToSampleTransformer
BioSourceValidator
BioWell
BioWell.LockMode
BioWellData
BioWellLoader
BioWellNameGenerator
BlockInfo
Body
BooleanExpression
BooleanFormatter
BooleanFormatter.Type
BooleanParameterType
BooleanParameterValueData
BooleanWriter
Bundle
Button
Button
ButtonAction
ButtonBean
ButtonGroup
ByteArrayWriter
Bzip2FilePacker
Bzip2FileUnpacker
CacheControlFilter
CalendarButton
CaseExpression
CdfFileReporterImporter
CdfValidationAction
CdfValidationFactory
CdfValidator
Cell
CellValue
CelValidationAction
CelValidationFactory
CelValidator
ChainedProgressReporter
ChangeHistory
ChangeHistoryData
ChangeHistoryDetailData
ChangeHistoryDetailLoader
ChangeHistoryUtil
ChangeType
ChannelFunction
CharacterEncodingFilter
ChildItem
ChildNodeDirection
ChildNodeLoaderAction
ChildrenTransformer
ClassLocal
ClassMapErrorHandler
ClassUtil
Client
ClientContext
ClientData
ClientDefaultSetting
ClientDefaultSettingData
ClonableProperty
ClonableReporterQuery
CloneReportersPlugin
CloseResourceInputStream
CmdLine
ColFunction
CollectedExtractsToDerivedBioAssayTransformer
CollectedExtractsToRawBioAssayTransformer
CollectExtracts
CollectionTransformer
ColorFormatter
ColorGenerator
Coloring
ColoringData
ColumnDef
ColumnHeaders
ColumnMapper
CombiningEventFilter
CommonData
CommonItem
CompactButtonRenderer
CompactButtonRendererFactory
ComparableComparator
CompileAll
ComponentData
CompoundMapper
ConditionalQueryElement
Config
ConfigurationException
ConfigureByExample
ConnectionClosedException
ConnectionManager
ConnectionManagerFactory
ConnectionManagerUtil
ConnectionParameters
ConsoleProgressReporter
ConstantMapper
ContentSecurityPolicyFilter
ContentSecurityPolicyReportServlet
ContextData
ContextIndex
ContextKey
ContextUtil
ContextUtil.ContextResult
ContextUtil.IsInContextFilter
Controlled
ConverterFactory
Coordinate
CountExpression
CropStringMapper
CustomRequestHandler
Data
DatabaseException
DataCube
DataCube.RawMappingQuery
DataCubeColumn
DataCubeColumnData
DataCubeData
DataCubeExtraValue
DataCubeExtraValueData
DataCubeFilter
DataCubeFilterData
DataCubeLayer
DataCubeLayerData
DataFileFormatter
DataFileLoader
DataFileType
DataFileTypeData
DataFileValidator
DataLoader
DataNoFunction
DataParser
DataQuery
DataQueryWrapper
DataResultIterator
DataWriter
DataWriterFactory
DateFormatException
DateFormatter
DateParameterType
DateParameterValueData
DateUtil
DateWriter
DbControl
DbControl.SaveIf
DbEngine
DbIndexWork
DbLogManager
DbLogManagerFactory
DebugOnSaveActionFactory
DebugOnSaveActionFactory.DebugOnSaveAction
DefaultConfigurationValues
DefaultDbEngine
DefaultEntityLogger
DefaultFilter
DefaultItemFunction
DefaultRequestHandler
DelegatingSignalHandler
DeletedFilter
DeleteResourcesProcessor
DeprecationLogger
DerivedBioAssay
DerivedBioAssay.FixDerivedBioAssayParentsRecursivelyAction
DerivedBioAssayData
DerivedBioAssayImporter
DerivedBioAssayLoader
DerivedBioAssayToChildDerivedBioAssayTransformer
DerivedBioAssayToParentDerivedBioAssayTransformer
DerivedBioAssayToPhysicalBioAssayTransformer
DerivedBioAssayToRawBioAssayTransformer
DerivedBioAssayValidator
DescOrder
DetachedItemException
Diff3
DirectionalCacheKey
Directory
DirectoryData
DisabledInheritanceFilter
DisablePluginsProcessor
DisallowedValueException
DiskConsumable
DiskConsumableData
DiskFileWrapper
DiskInputStreamLocator
DiskUsage
DiskUsageData
DiskUsageStatistics
DivideConverter
DivideExpression
DoubleParameterType
DoubleParameterValueData
DoubleWriter
Download
DropDynamicTableAction
DummyJobExecutor
DummyService
DuplicateWizardException
Dynamic
DynamicActionAttribute
DynamicActionAttributes
DynamicActionAttributeSupport
DynamicExtraValueQuery
DynamicField
DynamicFilter
DynamicJoin
DynamicPositionQuery
DynamicPositionQueryJoiners
DynamicPositionQueryJoiners.ExtraValueJoiner
DynamicPositionQueryJoiners.ReporterJoiner
DynamicPositionQueryJoiners.ReporterListJoiner
DynamicQuery
DynamicQueryWrapper
DynamicRawDataQuery
DynamicRawDataQuery.RawBioAssayJoiner
DynamicRawDataQuery.ReporterJoiner
DynamicRawDataQuery.ReporterListJoiner
DynamicReporterQuery
DynamicReporterQuery.MasterReporterJoiner
DynamicReporterQuery.ReporterListJoiner
DynamicRestriction
DynamicResultIterator
DynamicSpotQuery
DynamicSpotQueryJoiners
DynamicSpotQueryJoiners.ExtraValueJoiner
DynamicSpotQueryJoiners.RawDataJoiner
DynamicSpotQueryJoiners.ReporterJoiner
DynamicSpotQueryJoiners.ReporterListJoiner
DynamicUtil
DynamicUtil.SelectedInfo
EditUtil
EmailUtil
EncoderDecoder
EncodeUtil
EngineFactory
EnhancedThreadSignalHandler
EntityDetails
EntityLogger
EntityLogOptions
EntityQuery
EntityQueryWrapper
Enumeration
Enumeration.Entry
EnumFormatter
EqRestriction
EqualsConverter
EqualsFilter
EqualsHelper
ErrorHandler
ErrorHandler
ErrorHandlerFactory
EventFilter
EventHandler
EventHandler
EventType
EventType
EventTypeFilter
ExceptionCatcher
ExceptionInterruptHandler
ExecuteUpdateWork
ExpConverter
Experiment
ExperimentalFactorLoader
ExperimentalFactorValidator
ExperimentData
ExperimentExplorer
ExperimentExplorer.AnnotationGroup
ExperimentExplorer.AnnotationSummary
ExperimentExplorer.InExpression
ExperimentExplorer.ReporterPositions
ExperimentExplorerPlotServlet
ExperimentExplorerPlotServlet.ColumnKey
ExperimentLoader
ExperimentValidator
ExpExpression
ExportableField
ExportableFieldConverter
ExportableFieldFactory
ExportableFieldFormatter
ExportedProperty
ExportOutputStream
ExportTemplate
Expression
Expressions
ExpressionSelect
ExtendableData
ExtendedAbout
ExtendedProperties
ExtendedProperty
ExtendedPropertyAccessor
ExtendedPropertyAccessor.GetterSetter
ExtendedPropertyFormatter
ExtendedPropertyLinker
Extension
ExtensionBean
ExtensionCells
ExtensionChildNodeLoader
ExtensionContext
ExtensionEventFilter
ExtensionKey
ExtensionNodeValidator
ExtensionPoint
ExtensionPointBean
ExtensionPointContext
ExtensionPointEventFilter
ExtensionPointFilter
ExtensionPointKey
ExtensionsControl
ExtensionsFile
ExtensionsFile.WriteableExtensionsFile
ExtensionsFileProcessor
ExtensionsFilter
ExtensionSignalTransporter
ExtensionSignalTransporter.SendSignalRenderer
ExtensionsInvoker
ExtensionsManager
ExtensionsManager.JarFirstURIComparator
ExtensionsServlet
ExtensionsUtil
ExternalProgramExecutor
ExternalProgramExecutor.RequestWrapper
ExternalProgramExecutor.ResponseWrapper
Extract
ExtractData
ExtractImporter
ExtractLoader
ExtractNameGenerator
ExtractResourcesProcessor
ExtractToChildExtractTransformer
ExtractToParentExtractTransformer
ExtractToPhysicalBioAssayTransformer
ExtractToSampleTransformer
ExtractToSampleTransformer
ExtractValidator
ExtractValidator.TagPosition
ExtraFileImporter
ExtraFloatParser
ExtraUserInformation
ExtraValue
ExtraValue.CoordinateType
ExtraValueData
ExtraValueExpression
ExtraValueFunction
ExtraValueJoin
ExtraValueType
ExtraValueTypeData
FactoryParametersKey
Failure
FallbackIdMethod
Feature
FeatureBatcher
FeatureCoordinate
FeatureData
FeatureIdentificationMethod
FieldInfo
File
File.Action
FileAttachable
FileAttachableData
FileCopyRunnable
FileData
FileExportOutputStream
FileImporter
FileImportInputStream
FilenameGenerator
FileOnlyImporterSupport
FilePacker
FileParameterType
FilePathFormatter
FileServer
FileServerData
FileSet
FileSet.QueryRuntimeFilterImpl
FileSetData
FileSetMember
FileSetMember.QueryRuntimeFilterImpl
FileSetMemberData
FileSetMemberLoader
FileSetMemberLogger
FileSetMemberNameGenerator
FileStoreEnabled
FileStoreEnabledData
FileStoreUtil
FileTypeIndex
FileUnpacker
FileUpload
FileUpload.SectionHeaders
FileUpload.UploadStatus
FileUploadProgress
FileUtil
FileWrapper
Filter
FilterBatcher
FilterUtil
FirstPassSectionSpotsParser
Fix
FixedButtonFactory
FixedMenuItemFactory
FixedSkinActionFactory
FixedSkinActionFactory.MySkinAction
FixedStartPageFactory
FixedTabFactory
FlatFileParser
FlatFileParser.Data
FlatFileParser.Line
FlatFileParser.LineType
FloatConverter
FloatExpression
FloatParameterType
FloatParameterValueData
FloatWriter
Form
Formatter
FormatterFactory
FormatterSettings
Formula
Formula.AverageMethod
Formula.Parser
Formula.Type
FormulaData
FormulaFilter
ForwardingSignalHandler
FunctionSafeJep
FunctionSafeJep.SafeFunctionTable
FunctionSafeJep.UnknownFunction
GalExporter
GenericBaseDataWriterFactory
GenericDiskDataWriterFactory
GenericExtraFileImporter
GenericIntensityParser
GenericOverview
GeometricMeanExpression
GetCurrentCatalogWork
GlobalDefaultSetting
GlobalDefaultSettingData
GreaterConverter
GreaterEqualsConverter
Group
Group.QueryRuntimeFilterImpl
GroupData
GroupGroups
GroupKeys
GroupPermissions
GroupProjects
GteqRestriction
GtfInputStream
GtfInputStream.Attribute
GtfReporterImporter
GtfReporterMapImporter
GtfValidationAction
GtfValidationFactory
GtRestriction
GuiContext
GuiContext.Type
GuiContextData
GzipFilePacker
GzipFileUnpacker
Hardware
HardwareData
HardwareLoader
HardwareValidator
HasAnnotationRestriction
HasAttributeFilter
Head
Header
HeaderRow
Headers
Help
Help
HelpData
HelpExporter
HelpImporter
HibernateUtil
HibernateUtil.DelayedFilterDef
HibernateUtil.FilterConfigurator
Hidden
HideableSection
HistogramPlot
HistogramPlot.HistogramBin
HistogramPlot.HistogramDataset
HistogramPlot.HistogramSeries
HistogramPlot.TempSeries
HistogramPlot.YAggregate
Hql
HqlElementsExpression
HqlEntityExpression
HqlEntityParameterExpression
HqlExpression
HqlIndexExpression
HqlInnerJoin
HqlLeftJoin
HqlPropertyExpression
HqlQuery
HqlQueryJoiners
HqlQueryJoiners.AnnotationJoiner
HqlQueryJoiners.ReporterListJoiner
HqlRightJoin
HqlSizeExpression
HTML
HttpConnectionManager
HttpConnectionManagerActionFactory
HttpConnectionManagerFactory
HttpUtil
HybridizationImporter
Icon
Identifiable
IdentifiableData
IdentifiableFormatter
IdentityConverter
IdentityEncoderDecoder
IdentityFilter
IdentityUnitConverter
IdMethod
IfConverter
IgnoreFileProcessor
IgnoreFilter
IlluminaRawDataImporter
IlluminaRawDataImporter.BatchAndMapHolder
ImageRemapFilter
ImageRemapper
ImageRemapperUtil
ImmediateDownloadExporter
ImportInputStream
Include
IncludeContentSectionFactory
IncludeContentTabFactory
IncludeExcludeFilter
IndexedCacheKey
InfoRequestHandler
InheritAnnotationsManager
InheritAnnotationsManager.AnnotationTypeFilter
InheritAnnotationsManager.UsableParentFilter
InheritSpecification
InputStreamCombiner
InputStreamLocator
InputStreamSplitter
InputStreamTracker
InReporterListFunction
InRestriction
Install
Install.ItemSubtypeFT
Install.PlatformFT
InstalledFileProcessor
InstalledFilter
InstallFilter
InstanceOfFilter
IntegerConverter
IntegerExpression
IntegerFormatter
IntegerParameterType
IntegerParameterValueData
IntegerUtil
IntegerWriter
IntensityCalculator
IntensityCalculatorPlugin
IntensityCalculatorUtil
IntensityCalculatorUtil.JepIntensityCalculatorImpl
IntensityFormula
IntensityTransform
InteractivePlugin
InternalIdMethod
InternalJobQueue
InternalJobQueue.JobQueueKeyring
InternalSlotManager
InternalStorageController
InternalStorageController.StorageKeyring
InterruptHandler
InvalidAndModifiedFilter
InvalidAnnotationException
InvalidDataException
InvalidPasswordException
InvalidPasswordException
InvalidPathException
InvalidRelationException
InvalidUseOfNullException
InverseFilter
InvokationContext
IOSupport
Item
Item.DefinedPermissions
ItemAlreadyExistsException
ItemContext
ItemContext.PropertyFilterPair
ItemContext.SortDirection
ItemInUseException
ItemKey
ItemKeyData
ItemList
ItemList.DelayedAdditionManager
ItemList.SynchronizeOption
ItemListData
ItemListLoader
ItemListMemberNameGenerator
ItemListSyncFilterData
ItemModifiedException
ItemNotFoundException
ItemParameterType
ItemParameterValueData
ItemProxy
ItemQuery
ItemQueryLoader
ItemQueryWrapper
ItemResultIterator
ItemResultList
ItemSubtype
ItemSubtypeData
ItemSubtypeFileType
ItemSubtypeFileTypeData
ItemTypeFilter
ItemTypeFormatter
JarClassLoader
JarClassLoader.JarClassLoaderProxy
JarClassLoader.JarInfo
Jep
JepConversionFunction
JepDynamicField
JepExpressionFunction
JepExtraValueCalculator
JepFunction
JepIntensityTransformer
JepMapper
JepRestrictionFunction
Job
Job.ExecutionTime
Job.ProgressReporterImpl
Job.SignalKeyring
Job.Status
Job.Type
JobAgent
JobAgentConnection
JobAgentData
JobAgentInfo
JobAgentServerConnection
JobAgentServerConnection.ListenerThread
JobAgentServerConnection.RequestHandlerThread
JobAgentSettings
JobAgentSettingsData
JobData
JobExecutor
JobInfo
JobQueueChecker
JobRunner
Join
JoinType
JsonConverter
JsonUtil
JspContext
Key
KeyData
KeyPermission
Keyring
Kit
KitData
KitImporter
KitLoader
KitValidator
Label
LabeledExtractImporter
LeftFunction
LessConverter
LessEqualsConverter
LikeRestriction
LinearUnitConverter
LineNoFunction
Listable
ListableUtil
ListColumnAction
ListColumnDataLoader
ListColumnExportRenderer
ListColumnUtil
ListUtil
ListUtil
LoadServletsProcessor
LocalSignalReceiver
LocalSignalTransporter
Location
Log10MACalculator
Log2Function
Log2MACalculator
LogarithmConverter
LogControl
LogExpression
LoggableData
LoggingErrorHandlerFactory
LoggingErrorHandlerFactory.Level
LoggingInterceptor
LoggingInterceptor.LogDetails
LoggingInterceptor.LogManagerAndFactory
LoginException
LoginException
LoginFormAction
LoginFormBean
LoginRequest
LogManager
LogManagerFactory
LogUtil
LongParameterType
LongParameterValueData
LongWriter
LookupFormatter
LowessNormalization
LowessNormalization.CallableWorker
LowessNormalization.SpotData
LteqRestriction
LtRestriction
MACalculator
ManualDerivedBioAssayCreator
ManualEntryLogger
ManualLogEntry
ManualTransformCreator
MAParser
MAPlotFactory
Mapper
MappingBatcher
MappingCoordinate
MapValueLoader
MarkAsProcessedProcessor
MasterSlotManager
MasterSlotManager.RemoteSlot
MasterSlotManager.RemoteSlotRequestHandler
MasterSlotManager.RemoteSlotTimeoutChecker
MatrixBaseFileExporter
MatrixBfsExporter
MatrixModel
MatrixSpotIntensityEventHandler
MaxExpression
MD5
MeanExpression
MeanFunction
MeanRawDataPropertyExpression
MeasuredBioMaterial
MeasuredBioMaterial.RemainingQuantityAction
MeasuredBioMaterialData
MedianRatioNormalization
MedianRatioNormalization.SpotData
Menu
Menuitem
MenuItemAction
MenuItemAction.MenuType
MenuItemBean
Menuseparator
Message
MessageData
Metadata
Metadata.BasicData2ItemPropertyPath
Metadata.BasicItem2DataPropertyPath
Metadata.CollectionPropertyPath
Metadata.CombinedPropertyPath
Metadata.ComponentPropertyPath
Metadata.DateCopyPropertyPath
Metadata.EntityPropertyPath
Metadata.EvictPropertyPath
Metadata.IdentifierPropertyPath
Metadata.MapPropertyPath
Metadata.NoopPropertyPath
Metadata.PropertyPath
Metadata.ReporterScore2DataPropertyPath
MetadataModel
MetadataModel.Section
MetadataModel.SectionEntry
MetadataParser
MetadataWriter
Migration
MimeType
MimeTypeData
MinExpression
ModeInfo
MultiEventHandler
MultiFormatter
MultiPermissions
MultiplyConverter
MultiplyExpression
MultiPropertyIdMethod
MultiProtocolRequestHandler
MultiQueryIterator
MultiStepCollectionTransformer
MultiUpdateWork
MySQLEngine
Nameable
NameableComparator
NameableConverter
NameableData
NameableFormatter
NameableNameGenerator
NameableNodeValidator
NameableUtil
NamespaceParameterValuesWrapper
NamespacePluginParameter
NamespaceRequestWrapper
NativeSQLFunction
NaturalLogarithmConverter
Navigator
NegateExpression
NeqRestriction
NestedIterator
News
News.QueryRuntimeFilterImpl
NewsData
NiceFormatter
Node
Node.Type
NodeAttribute
NodeCache
NodeFactory
NodeLoader
NodeLoaderFactory
NodeNameGenerator
NodeValidator
NodeValidatorAction
NodeValidatorFactory
NoneOfFilter
NonRestartable
NotConverter
NotEqualsConverter
NotInReporterListFunction
NotLoggable
NotLoggedInException
NotNullFilter
NotRestriction
NullIfExceptionMapper
NullNodeLoader
NullNodeValidator
NumberFormatter
NumberFormatUtil
NumberOutOfRangeException
ObjectKey
OldAuthenticationWrapperFactory
OlderThanFileFilter
OneOfFilter
OnSaveAction
OnSaveRenderer
Operator
OrConverter
Order
Orders
OrRestriction
OverviewContext
OverviewPlotAction
OverviewPlotBean
OverviewUtil
Ownable
OwnableData
OwnableUtil
OwnableUtil
OwnedData
OwnedItem
PackedFileExporter
PackUtil
Page
Panel
ParameterDefinition
ParameterException
ParameterExpression
ParameterInfo
Parameters
ParameterType
ParameterValueData
ParameterValues
ParameterValuesImpl
ParameterValuesWrapper
ParentBioMaterialEventSourceLoader
ParentBioMaterialEventSourceLoaderFromBioAssay
ParentBioMaterialLoader
ParentsTransformer
PasswordData
PasswordParameterType
Path
Path
Path.Type
PathConverter
PathElement
PathLoader
PathParameterType
PathSetter
PathType
PauseRequestHandler
PerformanceTimer
Permission
PermissionButtonFactory
PermissionDeniedException
PermissionMenuItemFactory
PermissionRestriction
Permissions
PermissionTemplate
PermissionTemplateData
PermissionUtil
PhysicalBioAssay
PhysicalBioAssayData
PhysicalBioAssayImporter
PhysicalBioAssayLoader
PhysicalBioAssayToDerivedBioAssayTransformer
PhysicalBioAssayToExtractTransformer
PhysicalBioAssayValidator
PingRequestHandler
PlainTextTemplate
Plate
PlateCoordinate
PlateData
PlateEvent
PlateEventData
PlateEventLogger
PlateEventType
PlateEventTypeData
PlateFlatFileImporter
PlateGeometry
PlateGeometryData
PlateMapping
PlateMappingData
PlateMappingExporter
PlateMappingImporter
PlateType
PlateTypeData
Platform
PlatformData
PlatformFileType
PlatformFileTypeData
PlatformLoader
PlatformValidator
PlatformVariant
PlatformVariantData
PlotAnnotation
PlotGenerator
PlotGeneratorBean
PlotServlet
PlotServlet.CFResultIterator
PlotServlet.CFSqlResult
Plugin
Plugin.MainType
PluginConfiguration
PluginConfigurationData
PluginConfigurationExporter
PluginConfigurationImporter
PluginConfigurationRequest
PluginDefinition
PluginDefinitionData
PluginDefinitionFilter
PluginExecutionRequest
PluginInfo
PluginInfoKey
PluginInstallationProcessor
PluginKeys
PluginParameter
PluginPermission
PluginPermission
PluginRequest
PluginResponse
PluginSessionControl
PluginType
PluginTypeData
POP3Authenticator
PositionBatcher
PositionEventHandler
PositionExtraValueBatcher
PositionFunction
PostgresDbEngine
PostgresResultWriterFactory
PowerExpression
PredefinedQuery
PrefixSuffixFormatter
PrefixSuffixRenderer
Presets
Presets.Preset
PresetSelector
PrintMapFlatFileImporter
PrintMapFlatFileImporter.FormatType
PrintMapFlatFileImporter.MetaBlock
PrintMapFlatFileImporter.Section
PriorityComparator
ProcessJobExecutor
ProcessJobExecutor.StreamRedirector
ProcessResults
ProcessResults.FileResults
ProgramParameter
ProgressInputStream
ProgressReporter
ProgressReporterSignalHandler
Project
Project.QueryRuntimeFilterImpl
ProjectData
ProjectKey
ProjectKeyData
ProjectKeys
ProjectPermission
ProjectPermissions
ProjectSpecificAnnotationsManager
ProjectSpecificAnnotationsManager.AnnotationInfo
ProjectSpecificInfoFilter
PropertyFilter
PropertyFilter
PropertyFilterData
PropertyFilterFormatter
PropertyIdMethod
PropertyPathActionFactory
PropertyPathActionFactory.PropertyPathAction
PropertyPathProtected
PropertyValue
Protocol
ProtocolData
ProtocolLoader
ProtocolParameterLoader
ProtocolParameterValidator
ProtocolValidator
ProxyActionFactory
QuadraticMeanExpression
Quantity
QuantityData
Query
QueryElement
QueryExecutor
QueryExecutor.Cancelable
QueryExecutor.CancelableSession
QueryExecutor.CancelableStatelessSession
QueryExecutor.CancelableStatement
QueryExecutor.FutureItem
QueryExecutor.FutureResultSet
QueryExecutor.FutureScrollIterator
QueryExecutor.FutureUpdate
QueryParameter
QueryParameters
QueryResult
QueryRuntimeFilter
QueryRuntimeFilterFactory
QueryRuntimeFilterFactory.AnnotatableFilter
QueryRuntimeFilterFactory.BasicFilter
QueryRuntimeFilterFactory.ChainedFilter
QueryRuntimeFilterFactory.ChildFilter
QueryRuntimeFilterFactory.DenyAllFilter
QueryRuntimeFilterFactory.OwnableFilter
QueryRuntimeFilterFactory.RemovableFilter
QueryRuntimeFilterFactory.ShareableFilter
QueryRuntimeFilterManager
QuerySection
QueryType
QueryWrapper
QueryWrapper
Quota
Quota.QueryRuntimeFilterImpl
QuotaData
QuotaException
QuotaIndex
QuotaType
QuotaTypeData
RawBioAssay
RawBioAssayData
RawBioAssayImporter
RawBioAssayLoader
RawBioAssayPropertyExpression
RawBioAssayToDerivedBioAssayTransformer
RawBioAssayValidator
RawChannelFunction
RawData
RawDataBatcher
RawDataBatcher.FeatureInfo
RawDataBatcher.FeatureProxy
RawDataBatcher.ReporterProxy
RawDataFlatFileImporter
RawDataProperty
RawDataPropertyExpression
RawDataType
RawDataTypes
RawDataTypes.NameComparator
RawDataUtil
RawFunction
RealJoin
RealTable
ReflectValidationRuleActionFactory
RegexpFileFilter
Registered
RegisteredData
RegisterExtensionsProcessor
RegisterExtensionsProcessor.FileData
Registry
Registry.AttributeKey
Registry.RegisteredAbout
Registry.RegisteredEventHandler
Registry.RegisteredExtension
Registry.RegisteredExtensionPoint
RemoteSlotManager
RemoteSlotManager.RemoteSlotPinger
Removable
RemovableData
RemovableUtil
RemoveAllTransformer
Render
Renderer
RendererFactory
Reporter
ReporterBatcher
ReporterCloneBatcher
ReporterCloneBatcher.CloneSource
ReporterClonePropertyData
ReporterCloneTemplate
ReporterCloneTemplateData
ReporterData
ReporterFlatFileImporter
ReporterFunction
ReporterList
ReporterListData
ReporterListExpression
ReporterListJoin
ReporterListScoreData
ReporterMapFlatFileImporter
ReporterPropertyExpression
ReporterScore
ReporterScoreQuery
ReporterScoreQueryWrapper
ReporterScoreResultIterator
ReporterType
ReporterTypeData
Request
RequestHandler
RequestInformation
RequestWrapper
ResetErrorFlagProcessor
ResetMetadataRenderer
ResetProcessor
ResourceBundleFactory
ResourceBundleWrapper
Response
Response.Status
RestartServiceRenderer
Restriction
Restrictions
ResultIterator
ResultList
ResultSetWork
ResultWriter
ResultWriterFactory
ResumableConnectionManager
RethrowErrorHandlerFactory
ReturnClassFilter
RlikeRestriction
Role
Role.QueryRuntimeFilterImpl
RoleData
RoleKey
RoleKeyData
RoleKeys
RootRawBioAssay
RootRawBioAssayData
RootRawBioAssayLoader
Row
Rows
RssNewsFeed
RunnableInheritAnnotationsManager
Sample
SampleData
SampleImporter
SampleLoader
SampleToBioSourceTransformer
SampleToBioSourceTransformer
SampleToChildSampleTransformer
SampleToExtractTransformer
SampleToExtractTransformer
SampleToParentSampleTransformer
SampleValidator
SavePointWork
ScanImporter
ScatterPlot
Scheduler
SchemaExistsWork
SchemaGenerator
SchemaGenerator.CollectSqlTarget
SchemaGenerator.Mode
SchemaGenerator.SqlStatement
SchemaVersionData
ScoreFunction
Scripts
ScrollIterator
SecondaryStorageController
SecondPassSectionSpotsParser
SectionAction
SectionAssaysParser
SectionBean
SectionReporterListParser
Select
Select
SelectedExpression
Selects
SequenceFilenameGenerator
SerialBaseFileExporter
SerialBfsExporter
SerialSpotIntensityEventHandler
ServiceControllerAction
Services
ServiceSessionControl
ServiceSessionControl.FlushSessionAction
ServiceSessionControl.ServicesKeyring
ServicesEventHandler
ServicesUtil
ServletExportOutputStream
ServletLoader
ServletWrapper
ServletWrapperKey
Session
SessionControl
SessionControl.LoginInfo
SessionControl.SettingInfo
SessionData
SessionFactoryConfiguration
SessionWrapper
Setting
SettingData
Settings
Severity
Shareable
ShareableData
ShareableUtil
ShareableUtil
SharedData
SharedItem
SharedToRestriction
ShortWriter
ShutdownSignalSender
Signal
SignalException
SignalHandler
SignalReceivedException
SignalReceiver
SignalRequestHandler
SignalSender
SignalTarget
SignalTransporter
SimpleAbsoluteProgressReporter
SimpleAuthenticator
SimpleDynamicField
SimpleErrorHandler
SimpleExport
SimpleJepFunction
SimpleProgressReporter
SimpleSignalProgressReporter
SimpleSignalSender
SingleExtensionFilter
SingleFileValidationAction
SkinAction
Slot
SlotManager
SnapshotManager
SocketSignalReceiver
SocketSignalTransporter
SocketUtil
Software
SoftwareData
SoftwareLoader
SoftwareValidator
SourceItemTransformer
SourceItemTransformerChain
SourceItemTransformerFactory
SpecialQuery
SpotBatcher
SpotExtraValueBatcher
SpotImage
SpotImageCreator
SpotImageFormatter
SpotImages
SpotImagesData
SpotIntensityParser
SqlColumnExpression
SqlQuery
SqlResult
SqlResultIterator
SqlResultList
SqrtExpression
SquareRootConverter
SSLUtil2
StandardFieldConverter
StartPageAction
StartPageBean
StartRequestHandler
StartServiceRenderer
StartStopServlet
StatelessSessionWrapper
StaticCache
StaticCache.CleanupTask
StaticCache.LockEntry
StaticCache.LockSafeInputStream
StaticCache.LockSafeOutputStream
StaticFilter
StaticKeyManager
StopRequestHandler
StopServiceRenderer
StreamCacher
StringConverter
StringConverter
StringFormatter
StringLengthComparator
StringMatcher
StringMatcher.FuzzyMatch
StringParameterType
StringParameterValueData
StringTooLongException
StringUtil
StylableTag
Stylesheets
Submenu
SubqueryExpression
SubtractConverter
SubtractExpression
Subtypable
SubtypableData
SubtypableRelatedItems
SuggestedFilenameGenerator
SumExpression
SupportsPushAnnotations
SyncFilter
SyncFilter.SourceItemTransform
SynchronizedSpotDataParser
SynchronizedSpotDataParser.SynchronizedData
SystemData
SystemItem
SystemItems
Tab
TabAction
TabBean
TabControl
TabCrLfEncoderDecoder
Table
TableColumn
TableExistsWork
TableInfo
TableInfo.ColumnInfo
TableInfo.ForeignKeyInfo
TableInfo.IndexInfo
TableInfo.PrimaryKeyInfo
TableInfoWork
TableWriter
Tag
TagData
TagLoader
TagValidator
TarFilePacker
TarFileUnpacker
TarUtil
TextParameterValueData
TextWriter
ThreadJobExecutor
ThreadJobExecutor.ShutdownHook
ThreadSignalHandler
ThreadTimerTask
ThrowableUtil
TimestampParameterType
TimestampParameterValueData
TimestampWriter
ToBioSourceSourceItemTransformerFactory
ToDateExpression
ToDerivedBioAssaySourceItemTransformerFactory
ToExtractSourceItemTransformerFactory
Toolbar
ToolbarButtonRenderer
ToolbarButtonRendererFactory
ToolbarUtil
ToPhysicalBioAssaySourceItemTransformerFactory
ToRawBioAssaySourceItemTransformerFactory
ToSampleSourceItemTransformerFactory
ToSpaceEncoderDecoder
ToStringComparator
ToStringFormatter
Transactional
Transactional.Action
TransactionalAction
TransactionDetails
TransferRateProgressReporter
Transformation
TransformationData
TransformContext
Transformer
Trashcan
Trashcan.CircularRefInfo
Tree
Tree.Entry
Type
TypeWrapper
UMinusConverter
UninstalledFileProcessor
UninstallFilter
Unit
UnitCache
UnitCache.CacheKey
UnitConverter
UnitData
UnitSymbolData
UnitUtil
UnknownLoginException
UnmodifiableResultList
UnregisterExtensionsProcessor
UnsafeScriptable
UnsavedItemException
UnsupportedFileFormatException
UnsupportedSignalException
Update
Update.DropColumnChange
Update.SchemaChange
Upload
UploadAbortedException
UploadedFile
UriMetadata
UsableDataFileType
User
User.QueryRuntimeFilterImpl
UserClientSetting
UserClientSettingData
UserData
UserDefaultSetting
UserDefaultSettingData
UserGroups
UserKeys
UserPermissions
UserProjects
UserRoles
Utf8PropertiesResourceBundleControl
ValidAndNewOrModifiedFilter
Validatable
ValidatingFileSetMember
ValidationAction
ValidationOptions
ValidationRenderer
ValidationRuleAction
Validator
ValueConverter
Values
Values
ValueTypeFormatter
VariableConverter
VariableSetter
Version
VersionedParameter
ViewSpotImage
VirtualColumn
VirtualColumnExpression
VirtualColumnExpression.WrappedExpression
VirtualDb
VirtualDbData
VirtualTable
WasProcessedFilter
WebClientRegisterExtensionsProcessor
WebException
Well
WellCoordinateFormatter
WellData
WhenStatement
WrappedConfigureByExample
WrappingRenderer
XJspCompiler
XmlLoader
XMLTemplate
XmlUtil2
XmlUtil2.Validator
ZipFilePacker
ZipFileUnpacker
ZipUnpacker
Zoom