Interface | Description |
---|---|
SpotIntensityParser |
A spot intensity parser is responsible for parsing and extracting
spot intensity data on a row-by-row basis from a BASEfile.
|
Class | Description |
---|---|
BaseFileImporter |
Imports spot data from a serial or matrix BASEfile.
|
BaseFileImporter.RawDataProxy | |
BaseFileImporter.ReporterProxy | |
BaseFileInfo |
Collects information about a BASEfile as it gets parsed
by a
BaseFileImporter . |
BaseFileInfo.ChildBioAssay |
Keeps information about a new child bioassay from
the 'assays' section or 'spot' sections.
|
BaseFileInfo.SpotSectionInfo |
Keeps information about headers and more in a 'spot' section.
|
BfsImporter |
Imports spot data from a serial or matrix BFS.
|
BfsImporter.ProgressEventHandler | |
ExtraFloatParser |
Parser that is responsible for extracting extra float values
from the 'spot' section in a BASEfile.
|
FirstPassSectionSpotsParser |
Parses a 'spots' section of a BASEfile with bioassay set spot
data.
|
GenericIntensityParser |
Generic spot intensity parser implementation that
looks for 'intensity1', ..., 'intensityN' data columns for any
number of channels.
|
MAParser |
Spot intensity parser implementation for 2-channel data
that looks for M/A values in the spot data and converts them to ch1/ch2
intensity values.
|
MatrixSpotIntensityEventHandler |
Event handler that extracts spot intensity information from matrix BFS
data files and inserts the values to a spot batcher.
|
PositionEventHandler |
Event handler implementation intended to be used with a
SynchronizedSpotDataParser to extract the position
number from the parsed data. |
SecondPassSectionSpotsParser |
The second pass of the 'spots' section extracts spot and extra value
data.
|
SectionAssaysParser |
Parses the 'assays' section of a BASEfile with bioassay set spot
data.
|
SectionReporterListParser |
Parses the 'reporterlist' section of a BASEfile.
|
SerialSpotIntensityEventHandler |
Event handler that extracts spot intensity information from serial BFS
data files and inserts the values to a spot batcher.
|
SynchronizedSpotDataParser |
A parser that synchronizes the parsing of multiple underlying
data parsers and a master reporter annotations parser.
|
SynchronizedSpotDataParser.SynchronizedData |
This class holds information that is sent to the event
handler when
SynchronizedSpotDataParser.DATA_EVENT :s are
sent. |