Class | Description |
---|---|
AbstractFlatFileImporter |
An abstract base class for all importers that imports data from one or more
flat files.
|
AnnotationFlatFileImporter |
Plug-in for importing annotations from simple text files.
|
AnnotationFlatFileImporter.AnnotationValue | |
AnnotationFlatFileImporter.NewAnnotations |
Internal cache for storing annotation values from the file
for a single item.
|
Base1PluginExecuter |
This plug-in executes a plug-in from the Base1 system.
|
BaseFileExporterPlugin |
Exports bioassay set data as serial or matrix BASEfile:s.
|
BaseFileExporterPlugin.ExtendedDynamicField | |
BfsExporterPlugin |
Exports bioassay set data to BFS format.
|
BfsExporterPlugin.ExtendedExportableField | |
Bzip2FileUnpacker |
A plugin for unpacking a bzip2 compressed file to
the BASE file system.
|
CdfFileReporterImporter |
This plug-in can import probesets from Affymetrix CDF files as reporters.
|
CloneReportersPlugin |
A plug-in that clone reporter annotations to an experiment.
|
FormulaFilter |
This plugin provides methods to filter a bioassayset based on
formulas entered by the user.
|
GalExporter |
Exports an array design with features to a GAL file.
|
GzipFileUnpacker |
A plugin for unpacking a gzipped file to
the BASE file system.
|
HelpExporter |
This plugin exports helptexts stored in the database to a XML-file.
|
HelpImporter |
This plugin imports helptexts into database from a XML-file.
|
IlluminaRawDataImporter |
An importer plug-in for Illumina raw data.
|
IlluminaRawDataImporter.BatchAndMapHolder |
Holds a RawBioAssay and the RawDataBatcher to use for import and the
Mapper for all it's data columns.
|
IntensityCalculatorPlugin |
This plugin provides methods to calculate the intensity for a root bioassayset
using different formulas.
|
JepExtraValueCalculator |
This plugin caluclates extra values from a bioassayset using mathematical
formulas entered by the user.
|
JepIntensityTransformer |
This plugin transform channel intensities using mathematical formulas
entered by the user.
|
LowessNormalization | |
LowessNormalization.CallableWorker | |
LowessNormalization.SpotData | |
ManualDerivedBioAssayCreator |
Plug-in that allows a user to manually register an external analysis
procedure for derived bioassays and to upload files that was generated by it.
|
ManualTransformCreator |
Plug-in that allows a user to manually register an external analysis
procedure and to upload files that was generated by it.
|
MedianRatioNormalization | |
MedianRatioNormalization.SpotData | |
PackedFileExporter |
Plug-in that packs one or more selected files and directories into a single file.
|
PlateFlatFileImporter | |
PlateMappingExporter |
Exporter for plate mappings.
|
PlateMappingImporter |
Importer for plate mappings.
|
PluginConfigurationExporter |
This plugin exports parameters of a pluginconfiguration into an XML-file.
|
PluginConfigurationImporter |
This plugin imports pluginconfiguration from an XML-file.
|
PrintMapFlatFileImporter |
A plugin that imports an
ArrayDesign from a printmap. |
PrintMapFlatFileImporter.MetaBlock | |
RawDataFlatFileImporter |
A plugin that imports rawdata from a flatfile.
|
ReporterFlatFileImporter |
A plugin that imports reporter from a flat file.
|
ReporterMapFlatFileImporter |
A plugin that imports features to an ArrayDesign from a flat file.
|
SpotImageCreator | |
TarFileUnpacker |
A plugin for unpacking tar, gzipped tar and bzipped tar files to
the BASE file system.
|
ZipFileUnpacker |
A plugin for unpacking zip and jar file on the BASE file system.
|
Enum | Description |
---|---|
Base1PluginExecuter.Base1JobParameterType | |
PrintMapFlatFileImporter.FormatType | |
PrintMapFlatFileImporter.Section |