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3.0.1: 2011-11-10 | ||||||||
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java.lang.Objectnet.sf.basedb.util.affymetrix.CelValidator
public class CelValidator
Helper class for working with Affymetrix CEL files.
Constructor Summary | |
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CelValidator()
Create a new instance. |
Method Summary | |
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void |
copyMetadata(affymetrix.fusion.cel.FusionCELData cel,
RawBioAssay rba)
Copy metadata from the CEL file to the raw bioassay. |
affymetrix.fusion.cel.FusionCELData |
loadCelFile(File celFile)
Load a CEL file using the Affymetric Fusion SDK. |
void |
resetMetadata(RawBioAssay rba)
Reset metadata on the given raw bioassay. |
private void |
setHeader(RawBioAssay rba,
String name,
String value)
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void |
validateCelAndCdf(affymetrix.fusion.cel.FusionCELData cel,
affymetrix.fusion.cdf.FusionCDFData cdf,
String cdfChipType)
Check if the loaded CEL and CDF files matches. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public CelValidator()
Method Detail |
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private void setHeader(RawBioAssay rba, String name, String value)
public affymetrix.fusion.cel.FusionCELData loadCelFile(File celFile)
celFile
- The file to load
ItemNotFoundException
- If the actual file is not on the server
InvalidDataException
- If the file is not a CEL filepublic void copyMetadata(affymetrix.fusion.cel.FusionCELData cel, RawBioAssay rba)
cel
- The CEL filerba
- The raw bioassaypublic void resetMetadata(RawBioAssay rba)
rba
- The raw bioassaypublic void validateCelAndCdf(affymetrix.fusion.cel.FusionCELData cel, affymetrix.fusion.cdf.FusionCDFData cdf, String cdfChipType) throws InvalidDataException
cel
- The CEL fila datacdf
- The CDF file datacdfChipType
- The CDF chip type
InvalidDataException
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3.0.1: 2011-11-10 | ||||||||
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