Package net.sf.basedb.util.overview.validator

Class BioSourceValidator

java.lang.Object

net.sf.basedb.util.overview.validator.BasicNodeValidator<I>

net.sf.basedb.util.overview.validator.NameableNodeValidator<BioSource>

net.sf.basedb.util.overview.validator.BioSourceValidator

All Implemented Interfaces:

NodeValidator<BioSource>

public class BioSourceValidator
extends NameableNodeValidator<BioSource>

Validator implementation for biosources. Validation rules:

• Missing item: Validator.MISSING_BIOSOURCE
• Access denied: Validator.DENIED_BIOSOURCE

Version:

2.10

Author:

Nicklas

Last modified

$Date: 2011-08-11 11:09:06 +0200 (to, 11 aug 2011) $

Constructor Summary

Constructors

Constructor	Description
BioSourceValidator()

Method Summary

Modifier and Type	Method	Description
protected Fix	getMissingItemFix(DbControl dc, Node sampleNode)	Subclasses should override this method if they have a suggessted fix for a missing item problem.
void	postValidate(DbControl dc, OverviewContext context, Node node, Node parentNode)	Do nothing.

Methods inherited from class net.sf.basedb.util.overview.validator.BasicNodeValidator

getDeniedItemFix, postDeniedItem, postMissingItem, postValidateFolder, preDeniedItem, preMissingItem, preValidate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BioSourceValidator

public BioSourceValidator()

Method Details

postValidate

public void postValidate(DbControl dc,
 OverviewContext context,
 Node node,
 Node parentNode)

Description copied from class: BasicNodeValidator

Do nothing. Subclasses should override this method if they need more validation for an existing and accessible item.

Specified by:

postValidate in interface NodeValidator<BioSource>

Overrides:

postValidate in class NameableNodeValidator<BioSource>

Parameters:

dc - A DbControl to use if the validation needs to access the database

context - The current overview context

node - The node object that represents item

parentNode - The parent node that is linked with the item

getMissingItemFix

protected Fix getMissingItemFix(DbControl dc,
 Node sampleNode)

Description copied from class: BasicNodeValidator

Subclasses should override this method if they have a suggessted fix for a missing item problem. The default implementation does nothing, but the following template may be usable by most subclasses:

                new Fix("Add item to parent", parentNode.getItem())
                

Specified by:

getMissingItemFix in class BasicNodeValidator<BioSource>

Returns:

Suggested fix is to add a biosource to the parent sample.