Package net.sf.basedb.util

Class AnnotationUtil

java.lang.Object

net.sf.basedb.util.AnnotationUtil

public class AnnotationUtil
extends Object

Utility class for working with annotations.

Version:

2.9

Author:

Nicklas

Last modified

$Date: 2020-02-18 09:50:54 +0100 (tis, 18 feb. 2020) $

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
(package private) static class	AnnotationUtil.AnnotatableWrapper	This wrapper class is needed because we need to keep track of extracts linked with raw bioassays and derived bioassays until we have loaded the Extracts of a Physical Bioassay.
static class	AnnotationUtil.Cache

Constructor Summary

Constructors

Constructor	Description
AnnotationUtil()

Method Summary

Modifier and Type	Method	Description
static AnnotationUtil.Cache	createCache()	Create a new cache object that can be used with getAllAnnotatableParentItems(DbControl, Annotatable, Filter, Cache)
static Set<Annotatable>	getAllAnnotatableParentItems(DbControl dc, Annotatable item, Filter<Annotatable> filter)	Get all annotatable parent items for a given item.
static Set<Annotatable>	getAllAnnotatableParentItems(DbControl dc, Annotatable item, Filter<Annotatable> filter, AnnotationUtil.Cache cache)	Get all annotatable parent items for a given item.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AnnotationUtil

public AnnotationUtil()

Method Details

createCache

public static AnnotationUtil.Cache createCache()

Create a new cache object that can be used with getAllAnnotatableParentItems(DbControl, Annotatable, Filter, Cache)

Since:

3.2

getAllAnnotatableParentItems

public static Set<Annotatable> getAllAnnotatableParentItems(DbControl dc,
 Annotatable item,
 Filter<Annotatable> filter)

Get all annotatable parent items for a given item. A Filter may be used to filter the returned collection. If a filter is specified only parent items for which the Filter.evaluate(Object) method returns true are included in the returned collection. Note that all parent items are loaded before the filter is evaluated and that the evaluation order is undefined.

Parameters:

dc - The DbControl to use for database access

item - The item to find the parents for

filter - An optional filter that can be used to filter which parents to include

Returns:

A set containing the parent items

See Also:

• getAllAnnotatableParentItems(DbControl, Annotatable, Filter, Cache)

getAllAnnotatableParentItems

public static Set<Annotatable> getAllAnnotatableParentItems(DbControl dc,
 Annotatable item,
 Filter<Annotatable> filter,
 AnnotationUtil.Cache cache)

Get all annotatable parent items for a given item. A Filter may be used to filter the returned collection. If a filter is specified only parent items for which the Filter.evaluate(Object) method returns true are included in the returned collection. Note that all parent items are loaded before the filter is evaluated and that the evaluation order is undefined. A cache may be used to improve performance if this method is called multiple times with different items that have overlapping parent trees.

Parameters:

dc - The DbControl to use for database access

item - The item to find the parents for

filter - An optional filter that can be used to filter which parents to include

cache - An optional cache object

Returns:

A set containing the parent items

Since:

3.2

See Also:

• createCache()