AbstractFlatFileImporter |
An abstract base class for all importers that imports data from one or more
flat files.
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AnnotationFlatFileImporter |
Plug-in for importing annotations from simple text files.
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AnnotationFlatFileImporter.AnnotationValue |
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AnnotationFlatFileImporter.NewAnnotations |
Internal cache for storing annotation values from the file
for a single item.
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Base1PluginExecuter |
This plug-in executes a plug-in from the Base1 system.
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BaseFileExporterPlugin |
Exports bioassay set data as serial or matrix BASEfile:s.
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BaseFileExporterPlugin.ExtendedDynamicField |
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BfsExporterPlugin |
Exports bioassay set data to BFS format.
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BfsExporterPlugin.ExtendedExportableField |
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Bzip2FileUnpacker |
A plugin for unpacking a bzip2 compressed file to
the BASE file system.
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CdfFileReporterImporter |
This plug-in can import probesets from Affymetrix CDF files as reporters.
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CloneReportersPlugin |
A plug-in that clone reporter annotations to an experiment.
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FormulaFilter |
This plugin provides methods to filter a bioassayset based on
formulas entered by the user.
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GalExporter |
Exports an array design with features to a GAL file.
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GzipFileUnpacker |
A plugin for unpacking a gzipped file to
the BASE file system.
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HelpExporter |
This plugin exports helptexts stored in the database to a XML-file.
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HelpImporter |
This plugin imports helptexts into database from a XML-file.
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IlluminaRawDataImporter |
An importer plug-in for Illumina raw data.
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IlluminaRawDataImporter.BatchAndMapHolder |
Holds a RawBioAssay and the RawDataBatcher to use for import and the
Mapper for all it's data columns.
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IntensityCalculatorPlugin |
This plugin provides methods to calculate the intensity for a root bioassayset
using different formulas.
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JepExtraValueCalculator |
This plugin caluclates extra values from a bioassayset using mathematical
formulas entered by the user.
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JepIntensityTransformer |
This plugin transform channel intensities using mathematical formulas
entered by the user.
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LowessNormalization |
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LowessNormalization.CallableWorker |
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LowessNormalization.SpotData |
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ManualDerivedBioAssayCreator |
Plug-in that allows a user to manually register an external analysis
procedure for derived bioassays and to upload files that was generated by it.
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ManualTransformCreator |
Plug-in that allows a user to manually register an external analysis
procedure and to upload files that was generated by it.
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MedianRatioNormalization |
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MedianRatioNormalization.SpotData |
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PackedFileExporter |
Plug-in that packs one or more selected files and directories into a single file.
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PlateFlatFileImporter |
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PlateMappingExporter |
Exporter for plate mappings.
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PlateMappingImporter |
Importer for plate mappings.
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PluginConfigurationExporter |
This plugin exports parameters of a pluginconfiguration into an XML-file.
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PluginConfigurationImporter |
This plugin imports pluginconfiguration from an XML-file.
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PrintMapFlatFileImporter |
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PrintMapFlatFileImporter.MetaBlock |
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RawDataFlatFileImporter |
A plugin that imports rawdata from a flatfile.
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ReporterFlatFileImporter |
A plugin that imports reporter from a flat file.
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ReporterMapFlatFileImporter |
A plugin that imports features to an ArrayDesign from a flat file.
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TarFileUnpacker |
A plugin for unpacking tar, gzipped tar and bzipped tar files to
the BASE file system.
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ZipFileUnpacker |
A plugin for unpacking zip and jar file on the BASE file system.
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