Package net.sf.basedb.core.data

Class ArrayDesignData

java.lang.Object
net.sf.basedb.core.data.BasicData
net.sf.basedb.core.data.OwnedData
net.sf.basedb.core.data.SharedData
net.sf.basedb.core.data.CommonData
net.sf.basedb.core.data.AnnotatedData
net.sf.basedb.core.data.ArrayDesignData
All Implemented Interfaces:
AnnotatableData, FileStoreEnabledData, IdentifiableData, LoggableData, NameableData, OwnableData, RegisteredData, RemovableData, ShareableData
public class ArrayDesignData extends AnnotatedData implements FileStoreEnabledData, RegisteredData
This class holds information about an arrayDesign
Version:
2.0
Author:
enell
See Also:
Last modified
$Date: 2012-09-14 09:28:35 +0200 (fr, 14 sep 2012) $
Hibernate: class
table="`ArrayDesigns`" lazy="true"

  • Field Details

    • fileSet

      private FileSetData fileSet

    • entryDate

      private Date entryDate

    • platform

      private PlatformData platform

    • variant

      private PlatformVariantData variant

    • job

      private JobData job

    • numArrays

      private int numArrays

    • hasFeatures

      private boolean hasFeatures

    • dbFeatures

      private int dbFeatures

    • fileFeatures

      private int fileFeatures

    • featureIdentificationMethod

      private int featureIdentificationMethod

    • arrayDesignBlocks

      private Set<ArrayDesignBlockData> arrayDesignBlocks

    • plates

      private Set<ArrayDesignPlateData> plates

    • arrayBatches

      private Set<ArrayBatchData> arrayBatches

  • Constructor Details

    • ArrayDesignData

      public ArrayDesignData()

  • Method Details

    • getFileSet

      public FileSetData getFileSet()
      Description copied from interface: FileStoreEnabledData
      Get the file set attached to this item.
      Specified by:
      getFileSet in interface FileStoreEnabledData
      Returns:
      A FileSetData object or null if no files are attached

    • setFileSet

      public void setFileSet(FileSetData fileSet)
      Description copied from interface: FileStoreEnabledData
      Attach a file set to the item. Null is allowed to unlink it.
      Specified by:
      setFileSet in interface FileStoreEnabledData

    • getEntryDate

      public Date getEntryDate()
      Description copied from interface: RegisteredData
      Get the date this item was added to the database. The value is generated at creation time and can't be modified later.
      Specified by:
      getEntryDate in interface RegisteredData

    • setEntryDate

      public void setEntryDate(Date entryDate)

    • getPlatform

      public PlatformData getPlatform()
      Get the platform this raw bioassay uses
      Since:
      2.5
      Hibernate: column
      name="`platform_id`" not-null="true"
      Hibernate: many-to-one
      outer-join="false"

    • setPlatform

      public void setPlatform(PlatformData platform)

    • getVariant

      public PlatformVariantData getVariant()
      Get the platform variant this raw bioassay uses, or null.
      Since:
      2.5
      Hibernate: column
      name="`variant_id`"
      Hibernate: many-to-one
      outer-join="false"

    • setVariant

      public void setVariant(PlatformVariantData variant)

    • getJob

      public JobData getJob()
      Get the job that was used to import features to this array desing
      Since:
      2.7
      Hibernate: many-to-one
      column="`job_id`" not-null="false" outer-join="false"

    • setJob

      public void setJob(JobData job)
      Since:
      2.7

    • getNumArrays

      public int getNumArrays()
      The number of arrays on a single slide.
      Since:
      2.6
      Hibernate: property
      column="`num_arrays`" type="int" not-null="true"

    • setNumArrays

      public void setNumArrays(int numArrays)

    • getHasFeatures

      public boolean getHasFeatures()
      If the array design has features or not.
      Hibernate: property
      column="`has_features`" type="boolean" not-null="true"

    • setHasFeatures

      public void setHasFeatures(boolean hasFeatures)

    • getNumDbFeatures

      public int getNumDbFeatures()
      The number of features on this array design that are stored in the database.
      Since:
      2.5
      Hibernate: property
      column="`db_features`" type="int" not-null="true"

    • setNumDbFeatures

      public void setNumDbFeatures(int dbFeatures)

    • getNumFileFeatures

      public int getNumFileFeatures()
      The number of features on this array design that are stored inside files.
      Since:
      2.5
      Hibernate: property
      column="`file_features`" type="int" not-null="true"

    • setNumFileFeatures

      public void setNumFileFeatures(int fileFeatures)

    • getFeatureIdentificationMethod

      public int getFeatureIdentificationMethod()
      The method to use for identiying features. 1 = COORDINATES, 2 = POSITION, 3 = FEATURE_ID
      Since:
      2.6
      Hibernate: property
      column="`identification_method`" type="int" not-null="true"

    • setFeatureIdentificationMethod

      public void setFeatureIdentificationMethod(int featureIdentificationMethod)

    • getArrayDesignBlocks

      Set<ArrayDesignBlockData> getArrayDesignBlocks()
      This is the inverse end.
      See Also:
      Hibernate: set
      lazy="true" inverse="true" cascade="delete"
      Hibernate: collection-key
      column="`arraydesign_id`"
      Hibernate: collection-one-to-many
      class="net.sf.basedb.core.data.ArrayDesignBlockData"

    • setArrayDesignBlocks

      void setArrayDesignBlocks(Set<ArrayDesignBlockData> arrayDesignBlocks)

    • getPlates

      public Set<ArrayDesignPlateData> getPlates()
      The plates this design is made from.
      Hibernate: set
      lazy="true" inverse="true" cascade="all-delete-orphan"
      Hibernate: collection-key
      column="`arraydesign_id`"
      Hibernate: collection-one-to-many
      class="net.sf.basedb.core.data.ArrayDesignPlateData"

    • setPlates

      void setPlates(Set<ArrayDesignPlateData> plates)

    • getArrayBatches

      Set<ArrayBatchData> getArrayBatches()
      This is the inverse end.
      See Also:
      Hibernate: set
      lazy="true" inverse="true"
      Hibernate: collection-key
      column="`arraydesign_id`"
      Hibernate: collection-one-to-many
      class="net.sf.basedb.core.data.ArrayBatchData"

    • setArrayBatches

      void setArrayBatches(Set<ArrayBatchData> arrayBatches)