| 1 | <?xml version="1.0" encoding="UTF-8"?>
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| 2 | <!DOCTYPE configfile SYSTEM "plugin-configuration-file.dtd">
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| 3 | <!--
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| 4 | Copyright (C) 2007 Jari Hakkinen, Martin Svensson
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| 5 |
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| 6 | This file is part of BASE - BioArray Software Environment.
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| 7 | Available at http://base.thep.lu.se/
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| 8 |
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| 9 | BASE is free software; you can redistribute it and/or modify it
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| 10 | under the terms of the GNU General Public License as published by
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| 11 | the Free Software Foundation; either version 3 of the License, or
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| 12 | (at your option) any later version.
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| 13 |
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| 14 | BASE is distributed in the hope that it will be useful, but WITHOUT
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| 15 | ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
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| 16 | or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public
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| 17 | License for more details.
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| 18 |
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| 19 | You should have received a copy of the GNU General Public License
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| 20 | along with BASE. If not, see <http://www.gnu.org/licenses/>.
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| 21 | -->
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| 22 | <configfile>
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| 23 | <configuration pluginClassName="net.sf.basedb.plugins.ReporterFlatFileImporter">
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| 24 | <configname>Reporters from 96well plates file</configname>
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| 25 | <description>This configuration is for importing reporters from the same text file as 96well plates are imported from.</description>
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| 26 | <parameter>
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| 27 | <name>nameColumnMapping</name>
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| 28 | <label>Name</label>
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| 29 | <description />
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| 30 | <class>java.lang.String</class>
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| 31 | <value>\oligo_id\</value>
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| 32 | </parameter>
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| 33 | <parameter>
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| 34 | <name>dataHeaderRegexp</name>
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| 35 | <label>Data header</label>
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| 36 | <description />
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| 37 | <class>java.lang.String</class>
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| 38 | <value>96_number\t96_column\t96_row\t96_position\toligo_id.*</value>
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| 39 | </parameter>
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| 40 | <parameter>
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| 41 | <name>trimQuotes</name>
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| 42 | <label>Remove quotes</label>
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| 43 | <description />
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| 44 | <class>java.lang.Boolean</class>
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| 45 | <value>true</value>
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| 46 | </parameter>
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| 47 | <parameter>
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| 48 | <name>dataSplitterRegexp</name>
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| 49 | <label>Data splitter</label>
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| 50 | <description />
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| 51 | <class>java.lang.String</class>
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| 52 | <value>\t</value>
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| 53 | </parameter>
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| 54 | <parameter>
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| 55 | <name>descriptionColumnMapping</name>
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| 56 | <label>Description</label>
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| 57 | <description />
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| 58 | <class>java.lang.String</class>
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| 59 | <value>\description_Ensembl*\</value>
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| 60 | </parameter>
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| 61 | <parameter>
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| 62 | <name>symbolColumnMapping</name>
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| 63 | <label>Gene symbol</label>
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| 64 | <description />
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| 65 | <class>java.lang.String</class>
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| 66 | <value>\gene_symbol_Ensembl*\</value>
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| 67 | </parameter>
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| 68 | <parameter>
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| 69 | <name>reporterIdColumnMapping</name>
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| 70 | <label>Reporter ID</label>
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| 71 | <description />
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| 72 | <class>java.lang.String</class>
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| 73 | <value>\oligo_id\</value>
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| 74 | </parameter>
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| 75 | <parameter>
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| 76 | <name>extendedColumnMapping.sequence</name>
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| 77 | <label>Sequence</label>
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| 78 | <description />
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| 79 | <class>java.lang.String</class>
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| 80 | <value>\oligo_sequence\</value>
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| 81 | </parameter>
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| 82 | </configuration>
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| 83 | </configfile>
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