DocBookSupport: reporter_importer_96wells.xml

File reporter_importer_96wells.xml, 2.8 KB (added by Jari Häkkinen, 14 years ago)
Line 
1<?xml version="1.0" encoding="UTF-8"?>
2<!DOCTYPE configfile SYSTEM "plugin-configuration-file.dtd">
3<!--
4  Copyright (C) 2007 Jari Hakkinen, Martin Svensson
5
6  This file is part of BASE - BioArray Software Environment.
7  Available at http://base.thep.lu.se/
8
9  BASE is free software; you can redistribute it and/or modify it
10  under the terms of the GNU General Public License as published by
11  the Free Software Foundation; either version 3 of the License, or
12  (at your option) any later version.
13
14  BASE is distributed in the hope that it will be useful, but WITHOUT
15  ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
16  or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public
17  License for more details.
18
19  You should have received a copy of the GNU General Public License
20  along with BASE. If not, see <http://www.gnu.org/licenses/>.
21-->
22<configfile>
23  <configuration pluginClassName="net.sf.basedb.plugins.ReporterFlatFileImporter">
24    <configname>Reporters from 96well plates file</configname>
25    <description>This configuration is for importing reporters from the same text file as 96well plates are imported from.</description>
26    <parameter>
27      <name>nameColumnMapping</name>
28      <label>Name</label>
29      <description />
30      <class>java.lang.String</class>
31      <value>\oligo_id\</value>
32    </parameter>
33    <parameter>
34      <name>dataHeaderRegexp</name>
35      <label>Data header</label>
36      <description />
37      <class>java.lang.String</class>
38      <value>96_number\t96_column\t96_row\t96_position\toligo_id.*</value>
39    </parameter>
40    <parameter>
41      <name>trimQuotes</name>
42      <label>Remove quotes</label>
43      <description />
44      <class>java.lang.Boolean</class>
45      <value>true</value>
46    </parameter>
47    <parameter>
48      <name>dataSplitterRegexp</name>
49      <label>Data splitter</label>
50      <description />
51      <class>java.lang.String</class>
52      <value>\t</value>
53    </parameter>
54    <parameter>
55      <name>descriptionColumnMapping</name>
56      <label>Description</label>
57      <description />
58      <class>java.lang.String</class>
59      <value>\description_Ensembl*\</value>
60    </parameter>
61    <parameter>
62      <name>symbolColumnMapping</name>
63      <label>Gene symbol</label>
64      <description />
65      <class>java.lang.String</class>
66      <value>\gene_symbol_Ensembl*\</value>
67    </parameter>
68    <parameter>
69      <name>reporterIdColumnMapping</name>
70      <label>Reporter ID</label>
71      <description />
72      <class>java.lang.String</class>
73      <value>\oligo_id\</value>
74    </parameter>
75    <parameter>
76      <name>extendedColumnMapping.sequence</name>
77      <label>Sequence</label>
78      <description />
79      <class>java.lang.String</class>
80      <value>\oligo_sequence\</value>
81    </parameter>
82  </configuration>
83</configfile>