DocBookSupport: reporter_importer_384wells.xml

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE configfile SYSTEM "plugin-configuration-file.dtd">
<!--
  Copyright (C) 2007 Jari Hakkinen, Martin Svensson

  This file is part of BASE - BioArray Software Environment.
  Available at http://base.thep.lu.se/

  BASE is free software; you can redistribute it and/or modify it
  under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 3 of the License, or
  (at your option) any later version.

  BASE is distributed in the hope that it will be useful, but WITHOUT
  ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
  or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public
  License for more details.

  You should have received a copy of the GNU General Public License
  along with BASE. If not, see <http://www.gnu.org/licenses/>.
-->
<configfile>
  <configuration pluginClassName="net.sf.basedb.plugins.ReporterFlatFileImporter">
    <configname>Reporters from 384well plates file</configname>
    <description>This configuration is for importing reporters from the same text file as 384well plates are imported from.</description>
    <parameter>
      <name>nameColumnMapping</name>
      <label>nameColumnMapping</label>
      <description />
      <class>java.lang.String</class>
      <value>\oligo_id\</value>
    </parameter>
    <parameter>
      <name>dataHeaderRegexp</name>
      <label>dataHeaderRegexp</label>
      <description />
      <class>java.lang.String</class>
      <value>384_number\t384_column\t384_row\t384_position\toligo_id.*</value>
    </parameter>
    <parameter>
      <name>dataSplitterRegexp</name>
      <label>dataSplitterRegexp</label>
      <description />
      <class>java.lang.String</class>
      <value>\t</value>
    </parameter>
    <parameter>
      <name>descriptionColumnMapping</name>
      <label>descriptionColumnMapping</label>
      <description />
      <class>java.lang.String</class>
      <value>\description_Ensembl*\</value>
    </parameter>
    <parameter>
      <name>symbolColumnMapping</name>
      <label>symbolColumnMapping</label>
      <description />
      <class>java.lang.String</class>
      <value>\gene_symbol_Ensembl*\</value>
    </parameter>
    <parameter>
      <name>reporterIdColumnMapping</name>
      <label>reporterIdColumnMapping</label>
      <description />
      <class>java.lang.String</class>
      <value>\oligo_id\</value>
    </parameter>
    <parameter>
      <name>extendedColumnMapping.sequence</name>
      <label>extendedColumnMapping.sequence</label>
      <description />
      <class>java.lang.String</class>
      <value>\oligo_sequence\</value>
    </parameter>
  </configuration>
</configfile>