1 | <?xml version="1.0" encoding="UTF-8"?> |
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2 | <!DOCTYPE configfile SYSTEM "plugin-configuration-file.dtd"> |
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3 | <!-- |
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4 | Copyright (C) 2007 Jari Hakkinen, Martin Svensson |
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5 | |
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6 | This file is part of BASE - BioArray Software Environment. |
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7 | Available at http://base.thep.lu.se/ |
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8 | |
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9 | BASE is free software; you can redistribute it and/or modify it |
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10 | under the terms of the GNU General Public License as published by |
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11 | the Free Software Foundation; either version 3 of the License, or |
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12 | (at your option) any later version. |
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13 | |
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14 | BASE is distributed in the hope that it will be useful, but WITHOUT |
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15 | ANY WARRANTY; without even the implied warranty of MERCHANTABILITY |
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16 | or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public |
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17 | License for more details. |
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18 | |
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19 | You should have received a copy of the GNU General Public License |
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20 | along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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21 | --> |
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22 | <configfile> |
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23 | <configuration pluginClassName="net.sf.basedb.plugins.ReporterFlatFileImporter"> |
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24 | <configname>Reporters from 384well plates file</configname> |
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25 | <description>This configuration is for importing reporters from the same text file as 384well plates are imported from.</description> |
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26 | <parameter> |
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27 | <name>nameColumnMapping</name> |
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28 | <label>nameColumnMapping</label> |
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29 | <description /> |
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30 | <class>java.lang.String</class> |
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31 | <value>\oligo_id\</value> |
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32 | </parameter> |
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33 | <parameter> |
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34 | <name>dataHeaderRegexp</name> |
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35 | <label>dataHeaderRegexp</label> |
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36 | <description /> |
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37 | <class>java.lang.String</class> |
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38 | <value>384_number\t384_column\t384_row\t384_position\toligo_id.*</value> |
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39 | </parameter> |
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40 | <parameter> |
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41 | <name>dataSplitterRegexp</name> |
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42 | <label>dataSplitterRegexp</label> |
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43 | <description /> |
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44 | <class>java.lang.String</class> |
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45 | <value>\t</value> |
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46 | </parameter> |
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47 | <parameter> |
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48 | <name>descriptionColumnMapping</name> |
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49 | <label>descriptionColumnMapping</label> |
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50 | <description /> |
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51 | <class>java.lang.String</class> |
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52 | <value>\description_Ensembl*\</value> |
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53 | </parameter> |
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54 | <parameter> |
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55 | <name>symbolColumnMapping</name> |
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56 | <label>symbolColumnMapping</label> |
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57 | <description /> |
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58 | <class>java.lang.String</class> |
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59 | <value>\gene_symbol_Ensembl*\</value> |
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60 | </parameter> |
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61 | <parameter> |
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62 | <name>reporterIdColumnMapping</name> |
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63 | <label>reporterIdColumnMapping</label> |
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64 | <description /> |
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65 | <class>java.lang.String</class> |
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66 | <value>\oligo_id\</value> |
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67 | </parameter> |
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68 | <parameter> |
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69 | <name>extendedColumnMapping.sequence</name> |
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70 | <label>extendedColumnMapping.sequence</label> |
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71 | <description /> |
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72 | <class>java.lang.String</class> |
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73 | <value>\oligo_sequence\</value> |
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74 | </parameter> |
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75 | </configuration> |
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76 | </configfile> |
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