Ticket #486: illumina-raw-data.xml

File illumina-raw-data.xml, 1.8 KB (added by Nicklas Nordborg, 15 years ago)

This replaces the older raw-data-types.xml. It incorrectly set one column to string type. This file only contains the Illumina definition. Copy and paste it into your existing raw-data-types.xml file. The database must be manually changed if you have used the old file before.

Line 
1  <raw-data-type 
2    id="illumina" 
3    channels="1" 
4    name="Illumina" 
5    table="RawDataIllumina">
6    <property
7      name="MIN_Signal"
8      title="MIN_Signal"
9      description="Minimum intensity of the gene in the group."
10      column="minSignal"
11      type="float"     
12    />
13    <property
14      name="AVG_Signal"
15      title="AVG_Signal"
16      description="Average intensity of the gene in the group."
17      column="avgSignal"
18      type="float"     
19    />
20    <property
21      name="MAX_Signal"
22      title="MAX_Signal"
23      description="Maximum intensity of the gene in the group."
24      column="maxSignal"
25      type="float"     
26    />
27    <property
28      name="NARRAYS"
29      title="NARRAYS"
30      description="Number of arrays in the group."
31      column="narrays"
32      type="int"     
33    />
34    <property
35      name="ARRAY_STDEV"
36      title="ARRAY_STDEV"
37      description="Standard deviation associated with array-to-array variability within the group (undefined when the group contains a single array)."
38      column="arrayStdDev"
39      type="float"     
40    />
41    <property
42      name="BEAD_STDEV"
43      title="BEAD_STDEV"
44      description="Average standard deviation associated with bead-to-bead variability for the arrays in the group."
45      column="beadStdDev"
46      type="float"     
47    />
48    <property
49      name="Avg_NBEADS"
50      title="Avg_NBEADS"
51      description="Average number of beads per bead type representing probes for the gene."
52      column="avgNBeads"
53      type="int"     
54    />
55    <property
56      name="Detection"
57      title="Detection"
58      description="p-value computed from the background model characterizing chance that the target sequence signal was distinguishable from the negative controls."
59      column="detection"
60      type="float"     
61    />
62    <intensity-formula
63      name="avgSignal"
64      title="Average signal"
65      description="Average signal as determined by BeadStudio software."
66      >
67      <formula 
68        channel="1"
69        expression="raw('AVG_Signal')"
70      />
71    </intensity-formula>
72  </raw-data-type>