1 | <?xml version="1.0" ?> |
---|
2 | <!DOCTYPE extended-properties SYSTEM "extended-properties.dtd" > |
---|
3 | <!-- |
---|
4 | $Id: extended-properties.xml 2313 2006-05-23 09:23:16Z nicklas $ |
---|
5 | |
---|
6 | Copyright (C) Authors contributing to this file. |
---|
7 | |
---|
8 | This file is part of BASE - BioArray Software Environment. |
---|
9 | Available at http://base.thep.lu.se/ |
---|
10 | |
---|
11 | BASE is free software; you can redistribute it and/or |
---|
12 | modify it under the terms of the GNU General Public License |
---|
13 | as published by the Free Software Foundation; either version 2 |
---|
14 | of the License, or (at your option) any later version. |
---|
15 | |
---|
16 | BASE is distributed in the hope that it will be useful, |
---|
17 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
---|
18 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
---|
19 | GNU General Public License for more details. |
---|
20 | |
---|
21 | You should have received a copy of the GNU General Public License |
---|
22 | along with this program; if not, write to the Free Software |
---|
23 | Foundation, Inc., 59 Temple Place - Suite 330, |
---|
24 | Boston, MA 02111-1307, USA. |
---|
25 | --> |
---|
26 | <extended-properties> |
---|
27 | <class name="ReporterData"> |
---|
28 | <property |
---|
29 | name="species" |
---|
30 | title="Species" |
---|
31 | description="The organism from which the reporter is derived" |
---|
32 | column="species" |
---|
33 | type="string" |
---|
34 | length="255" |
---|
35 | /> |
---|
36 | <property |
---|
37 | name="clusterId" |
---|
38 | title="Cluster ID" |
---|
39 | description="A unique identifier for a Unigene entry" |
---|
40 | column="clusterId" |
---|
41 | type="string" |
---|
42 | length="255" |
---|
43 | > |
---|
44 | <link |
---|
45 | regexp="\w+\.\d+" |
---|
46 | url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unigene&term={value}[ClusterID]" |
---|
47 | /> |
---|
48 | </property> |
---|
49 | <property |
---|
50 | name="length" |
---|
51 | title="Length" |
---|
52 | description="The length of the sequence" |
---|
53 | column="length" |
---|
54 | type="int" |
---|
55 | /> |
---|
56 | <property |
---|
57 | name="sequence" |
---|
58 | title="Sequence" |
---|
59 | description="The nucleotide sequence of the reporter" |
---|
60 | column="sequence" |
---|
61 | type="string" |
---|
62 | length="65535" |
---|
63 | /> |
---|
64 | <property |
---|
65 | name="vector" |
---|
66 | title="Vector" |
---|
67 | description="The vector from which the reporter is derived" |
---|
68 | column="vector" |
---|
69 | type="string" |
---|
70 | length="65535" |
---|
71 | /> |
---|
72 | <property |
---|
73 | name="tissue" |
---|
74 | title="Tissue" |
---|
75 | description="The tissue from which the reporter is derived" |
---|
76 | column="tissue" |
---|
77 | type="string" |
---|
78 | length="65535" |
---|
79 | /> |
---|
80 | <property |
---|
81 | name="library" |
---|
82 | title="Library" |
---|
83 | description="The library from which the reporter is derived" |
---|
84 | column="library" |
---|
85 | type="string" |
---|
86 | length="65535" |
---|
87 | /> |
---|
88 | <property |
---|
89 | name="accession" |
---|
90 | title="Accession" |
---|
91 | description="" |
---|
92 | column="accession" |
---|
93 | type="string" |
---|
94 | length="255" |
---|
95 | /> |
---|
96 | <property |
---|
97 | name="nid" |
---|
98 | title="NID" |
---|
99 | description="" |
---|
100 | column="nid" |
---|
101 | type="string" |
---|
102 | length="255" |
---|
103 | /> |
---|
104 | <property |
---|
105 | name="chromosome" |
---|
106 | title="Chromosome" |
---|
107 | description="The chromosome from which the reporter is derived" |
---|
108 | column="chromosome" |
---|
109 | type="string" |
---|
110 | length="255" |
---|
111 | /> |
---|
112 | <property |
---|
113 | name="cytoband" |
---|
114 | title="Cytoband" |
---|
115 | description="The cytoband from which the reporter is derived" |
---|
116 | column="cytoband" |
---|
117 | type="string" |
---|
118 | length="255" |
---|
119 | /> |
---|
120 | <property |
---|
121 | name="markers" |
---|
122 | title="Markers" |
---|
123 | description="" |
---|
124 | column="markers" |
---|
125 | type="string" |
---|
126 | length="255" |
---|
127 | /> |
---|
128 | <property |
---|
129 | name="antibiotics" |
---|
130 | title="Antibiotics" |
---|
131 | description="" |
---|
132 | column="antibiotics" |
---|
133 | type="string" |
---|
134 | length="255" |
---|
135 | /> |
---|
136 | <property |
---|
137 | name="locusLink" |
---|
138 | title="LocusLink" |
---|
139 | description="" |
---|
140 | column="locuslink" |
---|
141 | type="string" |
---|
142 | length="255" |
---|
143 | > |
---|
144 | <link |
---|
145 | regexp="\d+" |
---|
146 | url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids={value}" |
---|
147 | /> |
---|
148 | </property> |
---|
149 | <property |
---|
150 | name="omim" |
---|
151 | title="OMIM" |
---|
152 | description="" |
---|
153 | column="omim" |
---|
154 | type="string" |
---|
155 | length="255" |
---|
156 | > |
---|
157 | <link |
---|
158 | regexp="\d+" |
---|
159 | url="http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id={value}" |
---|
160 | /> |
---|
161 | </property> |
---|
162 | <property |
---|
163 | name="synonym" |
---|
164 | title="Synonym" |
---|
165 | description="" |
---|
166 | column="synonym" |
---|
167 | type="string" |
---|
168 | length="255" |
---|
169 | /> |
---|
170 | <property |
---|
171 | name="ontology" |
---|
172 | title="Gene Ontology" |
---|
173 | description="" |
---|
174 | column="ontology" |
---|
175 | type="string" |
---|
176 | length="65535" |
---|
177 | /> |
---|
178 | <property |
---|
179 | name="start" |
---|
180 | title="Start" |
---|
181 | description="" |
---|
182 | column="start" |
---|
183 | type="string" |
---|
184 | length="255" |
---|
185 | /> |
---|
186 | <property |
---|
187 | name="extraid1" |
---|
188 | title="Additional ID 1" |
---|
189 | description="" |
---|
190 | column="extraid1" |
---|
191 | type="string" |
---|
192 | length="255" |
---|
193 | /> |
---|
194 | <property |
---|
195 | name="extraid2" |
---|
196 | title="Additional ID 2" |
---|
197 | description="" |
---|
198 | column="extraid2" |
---|
199 | type="string" |
---|
200 | length="255" |
---|
201 | /> |
---|
202 | <property |
---|
203 | name="extraid3" |
---|
204 | title="Additional ID 3" |
---|
205 | description="" |
---|
206 | column="extraid3" |
---|
207 | type="string" |
---|
208 | length="255" |
---|
209 | /> |
---|
210 | <property |
---|
211 | name="extradescription1" |
---|
212 | title="Additional Description 1" |
---|
213 | description="" |
---|
214 | column="extradescription1" |
---|
215 | type="string" |
---|
216 | length="65535" |
---|
217 | /> |
---|
218 | |
---|
219 | <property |
---|
220 | name="extradescription2" |
---|
221 | title="Additional Description 2" |
---|
222 | description="" |
---|
223 | column="extradescription2" |
---|
224 | type="string" |
---|
225 | length="65535" |
---|
226 | /> |
---|
227 | <property |
---|
228 | name="extradescription3" |
---|
229 | title="Additional Description 3" |
---|
230 | description="" |
---|
231 | column="extradescription3" |
---|
232 | type="string" |
---|
233 | length="65535" |
---|
234 | /> |
---|
235 | |
---|
236 | </class> |
---|
237 | </extended-properties> |
---|
238 | |
---|