Ticket #486: extended-properties.xml

<?xml version="1.0" ?>
<!DOCTYPE extended-properties SYSTEM "extended-properties.dtd" >
<!--
  $Id: extended-properties.xml 2313 2006-05-23 09:23:16Z nicklas $

  Copyright (C) Authors contributing to this file.

  This file is part of BASE - BioArray Software Environment.
  Available at http://base.thep.lu.se/

  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
  as published by the Free Software Foundation; either version 2
  of the License, or (at your option) any later version.

  BASE is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with this program; if not, write to the Free Software
  Foundation, Inc., 59 Temple Place - Suite 330,
  Boston, MA  02111-1307, USA.
-->
<extended-properties>
  <class name="ReporterData">
    <property
      name="species"
      title="Species"
      description="The organism from which the reporter is derived"
      column="species"
      type="string"
      length="255"
    />
    <property
      name="clusterId"
      title="Cluster ID"
      description="A unique identifier for a Unigene entry"
      column="clusterId"
      type="string"
      length="255"
      >
      <link
        regexp="\w+\.\d+"
        url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unigene&amp;term={value}[ClusterID]"
      />
    </property>
    <property
      name="length"
      title="Length"
      description="The length of the sequence"
      column="length"
      type="int"
    />
    <property
      name="sequence"
      title="Sequence"
      description="The nucleotide sequence of the reporter"
      column="sequence"
      type="string"
      length="65535"
    />
    <property
      name="vector"
      title="Vector"
      description="The vector from which the reporter is derived"
      column="vector"
      type="string"
      length="65535"
    />
    <property
      name="tissue"
      title="Tissue"
      description="The tissue from which the reporter is derived"
      column="tissue"
      type="string"
      length="65535"
    />
    <property
      name="library"
      title="Library"
      description="The library from which the reporter is derived"
      column="library"
      type="string"
      length="65535"
    />
    <property
      name="accession"
      title="Accession"
      description=""
      column="accession"
      type="string"
      length="255"
    />
    <property
      name="nid"
      title="NID"
      description=""
      column="nid"
      type="string"
      length="255"
    />
    <property
      name="chromosome"
      title="Chromosome"
      description="The chromosome from which the reporter is derived"
      column="chromosome"
      type="string"
      length="255"
    />
    <property
      name="cytoband"
      title="Cytoband"
      description="The cytoband from which the reporter is derived"
      column="cytoband"
      type="string"
      length="255"
    />
    <property
      name="markers"
      title="Markers"
      description=""
      column="markers"
      type="string"
      length="255"
    />
    <property
      name="antibiotics"
      title="Antibiotics"
      description=""
      column="antibiotics"
      type="string"
      length="255"
    />
    <property
      name="locusLink"
      title="LocusLink"
      description=""
      column="locuslink"
      type="string"
      length="255"
      >
      <link 
        regexp="\d+" 
        url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=Retrieve&amp;dopt=Graphics&amp;list_uids={value}" 
      />
    </property>
    <property
      name="omim"
      title="OMIM"
      description=""
      column="omim"
      type="string"
      length="255"
      >
      <link
        regexp="\d+"
        url="http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id={value}"
      />
    </property>
    <property
      name="synonym"
      title="Synonym"
      description=""
      column="synonym"
      type="string"
      length="255"
    />
    <property
      name="ontology"
      title="Gene Ontology"
      description=""
      column="ontology"
      type="string"
      length="65535"
    />
    <property
      name="start"
      title="Start"
      description=""
      column="start"
      type="string"
      length="255"
    />
    <property
      name="extraid1"
      title="Additional ID 1"
      description=""
      column="extraid1"
      type="string"
      length="255"
    />
    <property
      name="extraid2"
      title="Additional ID 2"
      description=""
      column="extraid2"
      type="string"
      length="255"
    />
        <property
      name="extraid3"
      title="Additional ID 3"
      description=""
      column="extraid3"
      type="string"
      length="255"
    />
    <property
      name="extradescription1"
      title="Additional Description 1"
      description=""
      column="extradescription1"
      type="string"
      length="65535"
    />
    
    <property
      name="extradescription2"
      title="Additional Description 2"
      description=""
      column="extradescription2"
      type="string"
      length="65535"
    />
    <property
      name="extradescription3"
      title="Additional Description 3"
      description=""
      column="extradescription3"
      type="string"
      length="65535"
    />    

  </class>
</extended-properties>