1 | <?xml version="1.0" ?>
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2 | <!DOCTYPE extended-properties SYSTEM "extended-properties.dtd" >
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3 | <!--
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4 | $Id: extended-properties.xml 2313 2006-05-23 09:23:16Z nicklas $
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5 |
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6 | Copyright (C) Authors contributing to this file.
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7 |
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8 | This file is part of BASE - BioArray Software Environment.
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9 | Available at http://base.thep.lu.se/
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10 |
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11 | BASE is free software; you can redistribute it and/or
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12 | modify it under the terms of the GNU General Public License
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13 | as published by the Free Software Foundation; either version 2
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14 | of the License, or (at your option) any later version.
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15 |
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16 | BASE is distributed in the hope that it will be useful,
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17 | but WITHOUT ANY WARRANTY; without even the implied warranty of
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18 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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19 | GNU General Public License for more details.
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20 |
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21 | You should have received a copy of the GNU General Public License
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22 | along with this program; if not, write to the Free Software
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23 | Foundation, Inc., 59 Temple Place - Suite 330,
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24 | Boston, MA 02111-1307, USA.
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25 | -->
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26 | <extended-properties>
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27 | <class name="ReporterData">
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28 | <property
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29 | name="species"
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30 | title="Species"
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31 | description="The organism from which the reporter is derived"
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32 | column="species"
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33 | type="string"
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34 | length="255"
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35 | />
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36 | <property
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37 | name="clusterId"
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38 | title="Cluster ID"
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39 | description="A unique identifier for a Unigene entry"
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40 | column="clusterId"
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41 | type="string"
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42 | length="255"
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43 | >
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44 | <link
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45 | regexp="\w+\.\d+"
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46 | url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unigene&term={value}[ClusterID]"
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47 | />
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48 | </property>
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49 | <property
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50 | name="length"
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51 | title="Length"
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52 | description="The length of the sequence"
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53 | column="length"
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54 | type="int"
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55 | />
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56 | <property
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57 | name="sequence"
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58 | title="Sequence"
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59 | description="The nucleotide sequence of the reporter"
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60 | column="sequence"
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61 | type="string"
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62 | length="65535"
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63 | />
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64 | <property
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65 | name="vector"
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66 | title="Vector"
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67 | description="The vector from which the reporter is derived"
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68 | column="vector"
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69 | type="string"
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70 | length="65535"
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71 | />
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72 | <property
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73 | name="tissue"
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74 | title="Tissue"
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75 | description="The tissue from which the reporter is derived"
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76 | column="tissue"
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77 | type="string"
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78 | length="65535"
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79 | />
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80 | <property
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81 | name="library"
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82 | title="Library"
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83 | description="The library from which the reporter is derived"
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84 | column="library"
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85 | type="string"
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86 | length="65535"
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87 | />
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88 | <property
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89 | name="accession"
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90 | title="Accession"
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91 | description=""
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92 | column="accession"
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93 | type="string"
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94 | length="255"
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95 | />
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96 | <property
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97 | name="nid"
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98 | title="NID"
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99 | description=""
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100 | column="nid"
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101 | type="string"
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102 | length="255"
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103 | />
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104 | <property
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105 | name="chromosome"
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106 | title="Chromosome"
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107 | description="The chromosome from which the reporter is derived"
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108 | column="chromosome"
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109 | type="string"
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110 | length="255"
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111 | />
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112 | <property
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113 | name="cytoband"
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114 | title="Cytoband"
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115 | description="The cytoband from which the reporter is derived"
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116 | column="cytoband"
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117 | type="string"
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118 | length="255"
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119 | />
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120 | <property
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121 | name="markers"
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122 | title="Markers"
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123 | description=""
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124 | column="markers"
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125 | type="string"
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126 | length="255"
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127 | />
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128 | <property
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129 | name="antibiotics"
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130 | title="Antibiotics"
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131 | description=""
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132 | column="antibiotics"
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133 | type="string"
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134 | length="255"
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135 | />
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136 | <property
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137 | name="locusLink"
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138 | title="LocusLink"
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139 | description=""
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140 | column="locuslink"
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141 | type="string"
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142 | length="255"
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143 | >
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144 | <link
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145 | regexp="\d+"
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146 | url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids={value}"
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147 | />
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148 | </property>
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149 | <property
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150 | name="omim"
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151 | title="OMIM"
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152 | description=""
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153 | column="omim"
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154 | type="string"
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155 | length="255"
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156 | >
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157 | <link
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158 | regexp="\d+"
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159 | url="http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id={value}"
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160 | />
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161 | </property>
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162 | <property
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163 | name="synonym"
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164 | title="Synonym"
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165 | description=""
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166 | column="synonym"
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167 | type="string"
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168 | length="255"
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169 | />
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170 | <property
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171 | name="ontology"
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172 | title="Gene Ontology"
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173 | description=""
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174 | column="ontology"
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175 | type="string"
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176 | length="65535"
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177 | />
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178 | <property
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179 | name="start"
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180 | title="Start"
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181 | description=""
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182 | column="start"
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183 | type="string"
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184 | length="255"
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185 | />
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186 | <property
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187 | name="extraid1"
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188 | title="Additional ID 1"
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189 | description=""
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190 | column="extraid1"
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191 | type="string"
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192 | length="255"
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193 | />
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194 | <property
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195 | name="extraid2"
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196 | title="Additional ID 2"
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197 | description=""
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198 | column="extraid2"
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199 | type="string"
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200 | length="255"
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201 | />
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202 | <property
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203 | name="extraid3"
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204 | title="Additional ID 3"
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205 | description=""
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206 | column="extraid3"
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207 | type="string"
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208 | length="255"
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209 | />
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210 | <property
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211 | name="extradescription1"
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212 | title="Additional Description 1"
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213 | description=""
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214 | column="extradescription1"
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215 | type="string"
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216 | length="65535"
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217 | />
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218 |
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219 | <property
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220 | name="extradescription2"
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221 | title="Additional Description 2"
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222 | description=""
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223 | column="extradescription2"
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224 | type="string"
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225 | length="65535"
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226 | />
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227 | <property
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228 | name="extradescription3"
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229 | title="Additional Description 3"
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230 | description=""
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231 | column="extradescription3"
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232 | type="string"
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233 | length="65535"
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234 | />
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235 |
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236 | </class>
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237 | </extended-properties>
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238 |
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