Ticket #486: extended-properties.xml

File extended-properties.xml, 5.2 KB (added by base, 15 years ago)

Extended properties file edited by Jeremy Davis-Turak to include reporter columns used by Illumina

Line 
1<?xml version="1.0" ?>
2<!DOCTYPE extended-properties SYSTEM "extended-properties.dtd" >
3<!--
4  $Id: extended-properties.xml 2313 2006-05-23 09:23:16Z nicklas $
5
6  Copyright (C) Authors contributing to this file.
7
8  This file is part of BASE - BioArray Software Environment.
9  Available at http://base.thep.lu.se/
10
11  BASE is free software; you can redistribute it and/or
12  modify it under the terms of the GNU General Public License
13  as published by the Free Software Foundation; either version 2
14  of the License, or (at your option) any later version.
15
16  BASE is distributed in the hope that it will be useful,
17  but WITHOUT ANY WARRANTY; without even the implied warranty of
18  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
19  GNU General Public License for more details.
20
21  You should have received a copy of the GNU General Public License
22  along with this program; if not, write to the Free Software
23  Foundation, Inc., 59 Temple Place - Suite 330,
24  Boston, MA  02111-1307, USA.
25-->
26<extended-properties>
27  <class name="ReporterData">
28    <property
29      name="species"
30      title="Species"
31      description="The organism from which the reporter is derived"
32      column="species"
33      type="string"
34      length="255"
35    />
36    <property
37      name="clusterId"
38      title="Cluster ID"
39      description="A unique identifier for a Unigene entry"
40      column="clusterId"
41      type="string"
42      length="255"
43      >
44      <link
45        regexp="\w+\.\d+"
46        url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unigene&amp;term={value}[ClusterID]"
47      />
48    </property>
49    <property
50      name="length"
51      title="Length"
52      description="The length of the sequence"
53      column="length"
54      type="int"
55    />
56    <property
57      name="sequence"
58      title="Sequence"
59      description="The nucleotide sequence of the reporter"
60      column="sequence"
61      type="string"
62      length="65535"
63    />
64    <property
65      name="vector"
66      title="Vector"
67      description="The vector from which the reporter is derived"
68      column="vector"
69      type="string"
70      length="65535"
71    />
72    <property
73      name="tissue"
74      title="Tissue"
75      description="The tissue from which the reporter is derived"
76      column="tissue"
77      type="string"
78      length="65535"
79    />
80    <property
81      name="library"
82      title="Library"
83      description="The library from which the reporter is derived"
84      column="library"
85      type="string"
86      length="65535"
87    />
88    <property
89      name="accession"
90      title="Accession"
91      description=""
92      column="accession"
93      type="string"
94      length="255"
95    />
96    <property
97      name="nid"
98      title="NID"
99      description=""
100      column="nid"
101      type="string"
102      length="255"
103    />
104    <property
105      name="chromosome"
106      title="Chromosome"
107      description="The chromosome from which the reporter is derived"
108      column="chromosome"
109      type="string"
110      length="255"
111    />
112    <property
113      name="cytoband"
114      title="Cytoband"
115      description="The cytoband from which the reporter is derived"
116      column="cytoband"
117      type="string"
118      length="255"
119    />
120    <property
121      name="markers"
122      title="Markers"
123      description=""
124      column="markers"
125      type="string"
126      length="255"
127    />
128    <property
129      name="antibiotics"
130      title="Antibiotics"
131      description=""
132      column="antibiotics"
133      type="string"
134      length="255"
135    />
136    <property
137      name="locusLink"
138      title="LocusLink"
139      description=""
140      column="locuslink"
141      type="string"
142      length="255"
143      >
144      <link 
145        regexp="\d+" 
146        url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=Retrieve&amp;dopt=Graphics&amp;list_uids={value}" 
147      />
148    </property>
149    <property
150      name="omim"
151      title="OMIM"
152      description=""
153      column="omim"
154      type="string"
155      length="255"
156      >
157      <link
158        regexp="\d+"
159        url="http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id={value}"
160      />
161    </property>
162    <property
163      name="synonym"
164      title="Synonym"
165      description=""
166      column="synonym"
167      type="string"
168      length="255"
169    />
170    <property
171      name="ontology"
172      title="Gene Ontology"
173      description=""
174      column="ontology"
175      type="string"
176      length="65535"
177    />
178    <property
179      name="start"
180      title="Start"
181      description=""
182      column="start"
183      type="string"
184      length="255"
185    />
186    <property
187      name="extraid1"
188      title="Additional ID 1"
189      description=""
190      column="extraid1"
191      type="string"
192      length="255"
193    />
194    <property
195      name="extraid2"
196      title="Additional ID 2"
197      description=""
198      column="extraid2"
199      type="string"
200      length="255"
201    />
202        <property
203      name="extraid3"
204      title="Additional ID 3"
205      description=""
206      column="extraid3"
207      type="string"
208      length="255"
209    />
210    <property
211      name="extradescription1"
212      title="Additional Description 1"
213      description=""
214      column="extradescription1"
215      type="string"
216      length="65535"
217    />
218   
219    <property
220      name="extradescription2"
221      title="Additional Description 2"
222      description=""
223      column="extradescription2"
224      type="string"
225      length="65535"
226    />
227    <property
228      name="extradescription3"
229      title="Additional Description 3"
230      description=""
231      column="extradescription3"
232      type="string"
233      length="65535"
234    />   
235
236  </class>
237</extended-properties>
238