| 1 | Tests was done on my development machine (auster). Results
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| 2 | should not be compared to results made on other computers.
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| 3 |
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| 4 | The test was made on a fresh installation of BASE 2.11 on
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| 5 | MySQL 5.0.67 which was initialised with 100 raw data sets
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| 6 | following the instructions in
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| 7 | http://base.thep.lu.se/wiki/Specifications/Test_procedures/Performance
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| 8 | Eg. './test.sh performance -n 100 raw'
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| 9 |
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| 10 | The following tests were made from the web interface. The
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| 11 | main purpose of the tests are to keep the result as a reference
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| 12 | to make sure that any improvements we can do in the
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| 13 | BioAssaySetExporter doesn't affect other things.
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| 14 |
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| 15 | # = Number of assays
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| 16 | T1 = First run
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| 17 | T2 = Second run
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| 18 |
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| 19 | Create root bioassay set
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| 20 | ========================
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| 21 | formula: Mean FG - Median BG
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| 22 |
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| 23 | # T1 T2
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| 24 | --------------------
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| 25 | 10 1.27 2.12
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| 26 | 20 3.19 3.53
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| 27 | 40 5.48 6.53
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| 28 | 80 16.55 12.13
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| 29 |
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| 30 |
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| 31 | Filter bioassay set
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| 32 | ===================
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| 33 | formula: ch(1) > 0 && ch(2) > 0
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| 34 |
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| 35 | # T1 T2
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| 36 | --------------------
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| 37 | 10 1.27 0.43
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| 38 | 20 1.05 1.59
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| 39 | 40 3.18 2.53
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| 40 | 80 7.56 6.22
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| 41 |
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| 42 |
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| 43 | Lowess normalization
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| 44 | ====================
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| 45 | all parameters at default values
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| 46 |
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| 47 | # T1 T2
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| 48 | --------------------
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| 49 | 10 5.46 -
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| 50 | 20 10.33 -
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| 51 | 40 23.36 -
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| 52 | 80 49.02 -
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| 53 |
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