| 1 | Tests was done on my development machine (auster). Results |
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| 2 | should not be compared to results made on other computers. |
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| 3 | |
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| 4 | The test was made on a fresh installation of BASE 2.11 on |
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| 5 | MySQL 5.0.67 which was initialised with 100 raw data sets |
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| 6 | following the instructions in |
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| 7 | http://base.thep.lu.se/wiki/Specifications/Test_procedures/Performance |
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| 8 | Eg. './test.sh performance -n 100 raw' |
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| 9 | |
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| 10 | The following tests were made from the web interface. The |
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| 11 | main purpose of the tests are to keep the result as a reference |
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| 12 | to make sure that any improvements we can do in the |
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| 13 | BioAssaySetExporter doesn't affect other things. |
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| 14 | |
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| 15 | # = Number of assays |
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| 16 | T1 = First run |
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| 17 | T2 = Second run |
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| 18 | |
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| 19 | Create root bioassay set |
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| 20 | ======================== |
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| 21 | formula: Mean FG - Median BG |
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| 22 | |
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| 23 | # T1 T2 |
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| 24 | -------------------- |
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| 25 | 10 1.27 2.12 |
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| 26 | 20 3.19 3.53 |
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| 27 | 40 5.48 6.53 |
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| 28 | 80 16.55 12.13 |
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| 29 | |
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| 30 | |
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| 31 | Filter bioassay set |
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| 32 | =================== |
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| 33 | formula: ch(1) > 0 && ch(2) > 0 |
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| 34 | |
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| 35 | # T1 T2 |
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| 36 | -------------------- |
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| 37 | 10 1.27 0.43 |
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| 38 | 20 1.05 1.59 |
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| 39 | 40 3.18 2.53 |
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| 40 | 80 7.56 6.22 |
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| 41 | |
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| 42 | |
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| 43 | Lowess normalization |
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| 44 | ==================== |
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| 45 | all parameters at default values |
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| 46 | |
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| 47 | # T1 T2 |
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| 48 | -------------------- |
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| 49 | 10 5.46 - |
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| 50 | 20 10.33 - |
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| 51 | 40 23.36 - |
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| 52 | 80 49.02 - |
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| 53 | |
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