Timeline



Jun 9, 2016:

2:41 PM Milestone BASE 3.9 completed
2:40 PM WikiStart edited by Nicklas Nordborg
Released BASE 3.9.0 (diff)
2:39 PM DownloadPage edited by Nicklas Nordborg
Released BASE 3.9.0 (diff)
2:36 PM Ticket #2019 (Investigate problems with error handling in the file upload) created by Nicklas Nordborg
See #2018 for more information. Using AJAX for the file upload (see …
2:35 PM Tickets #841,​2006,​2013 batch updated by Nicklas Nordborg
fixed
2:34 PM Changeset [7177] by Nicklas Nordborg
Changes for future release 3.9.1
2:27 PM Changeset [7176] by Nicklas Nordborg
Tagging version 3.9
2:27 PM Changeset [7175] by Nicklas Nordborg
Preparing release 3.9
11:11 AM Changeset [7174] by Nicklas Nordborg
Changes for future release 3.10
11:10 AM Changeset [7173] by Nicklas Nordborg
Forking new minor release branch '3.9-stable'
10:53 AM Tickets #2006,​2016 batch updated by Nicklas Nordborg
(In [7172]) References #2006 and #2016. Changes the bytesWritten
10:53 AM Changeset [7172] by Nicklas Nordborg
References #2006 and #2016. Changes the bytesWritten varible from …
10:48 AM Tickets #2006,​2016 batch updated by Nicklas Nordborg
(In [7171]) References #2006 and #2016. Fixed compilation errors by …
10:48 AM Changeset [7171] by Nicklas Nordborg
References #2006 and #2016. Fixed compilation errors by removing …
10:45 AM Tickets #2006,​2016 batch updated by Nicklas Nordborg
(In [7170]) References #2006 and #2016. Removed parallelgzip jar file …
10:45 AM Changeset [7170] by Nicklas Nordborg
References #2006 and #2016. Removed parallelgzip jar file and added …
10:36 AM Ticket #2018 (It is not possible to abort a file upload) closed by Nicklas Nordborg
fixed: (In [7169]) Fixes #2018: It is not possible to abort a file upload …
10:36 AM Changeset [7169] by Nicklas Nordborg
Fixes #2018: It is not possible to abort a file upload Sort of... I …
9:46 AM Ticket #2018 (It is not possible to abort a file upload) updated by Nicklas Nordborg
I think this may be an issue with the HTTP 1.1 protocol. Checking all …

Jun 8, 2016:

1:50 PM Ticket #2018 (It is not possible to abort a file upload) updated by Nicklas Nordborg
Description changed
1:47 PM Ticket #2018 (It is not possible to abort a file upload) created by Nicklas Nordborg
Clicking on the "Abort" button when uploading a file seems to restart …
1:43 PM Ticket #2006 (Use parallel gzip implementation when compressing files) updated by Nicklas Nordborg
In theory it should be possible to handle the error while reading the …
1:35 PM Ticket #2006 (Use parallel gzip implementation when compressing files) updated by Nicklas Nordborg
Digging up the file from the internal BASE storage and testing it with …
1:34 PM pgzip-test.png attached to Ticket #2006 by Nicklas Nordborg
Using 7z to test a file that was created with PGZip
1:09 PM Ticket #2016 (Unexpected end of ZLIB input stream) closed by Nicklas Nordborg
duplicate: Closed as duplicate. Should be fixed as part of #2006.
1:08 PM Ticket #2006 (Use parallel gzip implementation when compressing files) reopened by Nicklas Nordborg
1:08 PM Ticket #2006 (Use parallel gzip implementation when compressing files) updated by Nicklas Nordborg
Reopened due to #2016.
1:07 PM Ticket #2012 (Improve context menu for column selection) closed by Nicklas Nordborg
fixed
1:07 PM Ticket #2017 (Improve progress reporting in "Packed file exporter" plug-in) closed by Nicklas Nordborg
fixed: (In [7168]) Fixes #2017: Improve progress reporting in "Packed file …
1:07 PM Changeset [7168] by Nicklas Nordborg
Fixes #2017: Improve progress reporting in "Packed file exporter" …
12:23 PM Ticket #2016 (Unexpected end of ZLIB input stream) updated by Nicklas Nordborg
Hmmm... further investigations seem to indicate that the parallel gzip …
9:56 AM Ticket #2017 (Improve progress reporting in "Packed file exporter" plug-in) updated by Nicklas Nordborg
Description changed
9:54 AM Ticket #2017 (Improve progress reporting in "Packed file exporter" plug-in) created by Nicklas Nordborg
Currently, the plug-in will update the progress only when starting to …
9:43 AM Ticket #2016 (Unexpected end of ZLIB input stream) created by Nicklas Nordborg
When using the "Packed file exporter" plug-in to create an archive …

Jun 7, 2016:

8:52 AM Ticket #2013 (Add support for logging when items are viewed) updated by Nicklas Nordborg
(In [7167]) References #2013: Add support for logging when items are …
8:52 AM Changeset [7167] by Nicklas Nordborg
References #2013: Add support for logging when items are viewed Added …
8:20 AM Ticket #2013 (Add support for logging when items are viewed) updated by Nicklas Nordborg
(In [7166]) References #2013: Add support for logging when items are …
8:20 AM Changeset [7166] by Nicklas Nordborg
References #2013: Add support for logging when items are viewed …

Jun 3, 2016:

1:30 PM Ticket #2015 (Store authentication method in the session log) closed by Nicklas Nordborg
fixed: (In [7165]) Fixes #2015: Store authentication method in the session …
1:30 PM Changeset [7165] by Nicklas Nordborg
Fixes #2015: Store authentication method in the session log Database …
10:01 AM Ticket #2013 (Add support for logging when items are viewed) updated by Nicklas Nordborg
(In [7164]) References #2013: Add support for logging when items are …
10:01 AM Changeset [7164] by Nicklas Nordborg
References #2013: Add support for logging when items are viewed Added …
9:24 AM Ticket #2013 (Add support for logging when items are viewed) updated by Nicklas Nordborg
Milestone, Status, Owner changed
9:22 AM Ticket #2015 (Store authentication method in the session log) created by Nicklas Nordborg
The session log (View->Sessions in the GUI) is used to store some …

Jun 2, 2016:

9:51 AM Ticket #2014 (Implement extension point for item initialization) created by Nicklas Nordborg
When creating new items, the BASE core API initializes some properties …
9:22 AM Ticket #2013 (Add support for logging when items are viewed) created by Nicklas Nordborg
The change logging system (#108) already in use should be extended …

May 30, 2016:

12:46 PM Ticket #2012 (Improve context menu for column selection) updated by Nicklas Nordborg
(In [7163]) References #2012: Improve context menu for column …
12:45 PM Ticket #2012 (Improve context menu for column selection) updated by Nicklas Nordborg
(In [7162]) References #2012: Improve context menu for column …
11:50 AM Changeset [7163] by Nicklas Nordborg
References #2014: Improve context menu for column selection Text that …
11:05 AM Changeset [7162] by Nicklas Nordborg
References #2014: Improve context menu for column selection Added …
9:49 AM Ticket #2012 (Improve context menu for column selection) created by Nicklas Nordborg
Right-clicking on the table headers brings up a context-menu for …
9:45 AM Ticket #2011 (Check that session id and client id match every time a new page is ...) closed by Nicklas Nordborg
fixed

May 27, 2016:

11:26 AM Ticket #2011 (Check that session id and client id match every time a new page is ...) updated by Nicklas Nordborg
(In [7161]) References #2011: Check that session id and client id …
11:26 AM Changeset [7161] by Nicklas Nordborg
References #2011: Check that session id and client id match every time …
9:43 AM Ticket #841 (Investigate BASE support for uploading files >2GB) updated by Nicklas Nordborg
(In [7160]) References #841: Investigate BASE support for uploading …
9:43 AM Changeset [7160] by Nicklas Nordborg
References #841: Investigate BASE support for uploading files >2GB …
9:41 AM Ticket #841 (Investigate BASE support for uploading files >2GB) updated by Nicklas Nordborg
There are no problems with Firefox any longer. I have successfully …
9:24 AM Ticket #841 (Investigate BASE support for uploading files >2GB) updated by Nicklas Nordborg
Status, Owner, Milestone changed
See #2007. It might be worth checking this again.
8:57 AM Ticket #2009 (PostgreSQL seems to be loading entire result set into memory) closed by Nicklas Nordborg
fixed: Seems to work now.
8:56 AM Ticket #2004 (Raw data query for multiple raw bioassays) closed by Nicklas Nordborg
fixed

May 26, 2016:

8:56 AM Ticket #2011 (Check that session id and client id match every time a new page is ...) updated by Nicklas Nordborg
(In [7159]) References #2011: Check that session id and client id …
8:56 AM Changeset [7159] by Nicklas Nordborg
References #2011: Check that session id and client id match every time …

May 25, 2016:

3:25 PM Ticket #2011 (Check that session id and client id match every time a new page is ...) updated by Nicklas Nordborg
(In [7158]) References #2011: Check that session id and client id …
3:25 PM Changeset [7158] by Nicklas Nordborg
References #2011: Check that session id and client id match every time …
8:39 AM Ticket #2011 (Check that session id and client id match every time a new page is ...) created by Nicklas Nordborg
It is possible to register client applications with BASE and use the …

May 24, 2016:

2:48 PM Ticket #2009 (PostgreSQL seems to be loading entire result set into memory) updated by Nicklas Nordborg
Status, Owner changed
2:47 PM Ticket #2010 (The job progress reporter should allow progress reports more often) closed by Nicklas Nordborg
fixed: (In [7157]) Fixes #2010: The job progress reporter should allow …
2:47 PM Changeset [7157] by Nicklas Nordborg
Fixes #2010: The job progress reporter should allow progress reports …
1:57 PM Ticket #2009 (PostgreSQL seems to be loading entire result set into memory) updated by Nicklas Nordborg
(In [7156]) References #2009: PostgreSQL seems to be loading entire …
1:57 PM Changeset [7156] by Nicklas Nordborg
References #2009: PostgreSQL seems to be loading entire result set …
1:49 PM Ticket #2010 (The job progress reporter should allow progress reports more often) created by Nicklas Nordborg
The current job progress reporter ignore updates unless at least 5 …
1:39 PM Ticket #2009 (PostgreSQL seems to be loading entire result set into memory) updated by Nicklas Nordborg
Using the JDBC API to programmatically set the fetch size to 100. …
1:30 PM loading-142-by-100.png attached to Ticket #2009 by Nicklas Nordborg
Load 142 x 100k raw data entries in batches by 100
9:33 AM Ticket #2009 (PostgreSQL seems to be loading entire result set into memory) updated by Nicklas Nordborg
It should be possible to create the setting …
8:57 AM Ticket #2009 (PostgreSQL seems to be loading entire result set into memory) updated by Nicklas Nordborg
The main suspect is that the …
8:49 AM Ticket #2009 (PostgreSQL seems to be loading entire result set into memory) updated by Nicklas Nordborg
The test case is now a list with 142 raw bioassays containing 100k+ …
8:47 AM loading-142-out-of-memory.png attached to Ticket #2009 by Nicklas Nordborg
Trying to load 142 x 100k raw data entries

May 23, 2016:

3:23 PM Ticket #2009 (PostgreSQL seems to be loading entire result set into memory) updated by Nicklas Nordborg
Description changed
2:58 PM Ticket #2009 (PostgreSQL seems to be loading entire result set into memory) created by Nicklas Nordborg
This was investigated for MySQL a long time ago and resulted in …
12:47 PM Ticket #2008 (It is not possible to change quota values) closed by Nicklas Nordborg
fixed: (In [7155]) Fixes #2008: It is not possible to change quota values
12:47 PM Changeset [7155] by Nicklas Nordborg
Fixes #2008: It is not possible to change quota values
12:34 PM Ticket #2007 (Set content length when downloading files larger than 2GB) closed by Nicklas Nordborg
fixed: (In [7154]) Fixes #2007: Set content length when downloading files …
12:34 PM Changeset [7154] by Nicklas Nordborg
Fixes #2007: Set content length when downloading files larger than 2GB
11:28 AM Ticket #2008 (It is not possible to change quota values) updated by Nicklas Nordborg
Milestone, Status, Owner changed
11:08 AM Ticket #2008 (It is not possible to change quota values) updated by Nicklas Nordborg
I think this was broken by #1742. The change near …
8:17 AM Ticket #2008 (It is not possible to change quota values) created by Nicklas Nordborg
It is not possible to modify the quota values of existing quota …

May 20, 2016:

2:14 PM Ticket #2007 (Set content length when downloading files larger than 2GB) updated by Nicklas Nordborg
Milestone, Priority, Type changed
2:13 PM Ticket #2007 (Set content length when downloading files larger than 2GB) created by Nicklas Nordborg
The Java Servlet 3.1 specification was updated to allow content size …
1:06 PM Ticket #2005 (Add annotation columns to experiment list view) closed by Nicklas Nordborg
fixed: (In [7153]) Fixes #2005: Add annotation columns to experiment list view
1:06 PM Changeset [7153] by Nicklas Nordborg
Fixes #2005: Add annotation columns to experiment list view
8:30 AM Ticket #2006 (Use parallel gzip implementation when compressing files) closed by Nicklas Nordborg
fixed: (In [7152]) Fixes #2006: Use parallel gzip implementation when …
8:30 AM Changeset [7152] by Nicklas Nordborg
Fixes #2006: Use parallel gzip implementation when compressing files
8:29 AM Ticket #2006 (Use parallel gzip implementation when compressing files) updated by Nicklas Nordborg
Tested the parallel implementation with the release exporter. …
8:15 AM Ticket #2006 (Use parallel gzip implementation when compressing files) updated by Nicklas Nordborg
Status, Owner changed
8:15 AM Ticket #2006 (Use parallel gzip implementation when compressing files) created by Nicklas Nordborg
Just found this: https://github.com/shevek/parallelgzip Which seems …

May 12, 2016:

1:01 PM Ticket #2005 (Add annotation columns to experiment list view) created by Nicklas Nordborg
Support for annotating experiments was added by #1644. For some reason …
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